BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0088.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01044807.1| tRNA pseudouridine synthase A [Nitrobacter sp... 426 e-117 ref|YP_319666.1| tRNA pseudouridine synthase A [Nitrobacter wino... 424 e-117 ref|YP_578881.1| tRNA pseudouridine synthase A [Nitrobacter hamb... 422 e-116 ref|YP_530697.1| tRNA pseudouridine synthase A [Rhodopseudomonas... 404 e-111 ref|NP_774747.1| tRNA pseudouridine synthase A [Bradyrhizobium j... 401 e-110 >ref|ZP_01044807.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A] gb|EAQ37588.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A] Length = 245 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/245 (82%), Positives = 220/245 (89%) Query: 1 MPRYKLTIEYDGTPFSGWQIQDTAPTVQGALEAAVKAICGEDVRVHGAGRTDAGVHARGQ 60 MPRY+LTIEYDG PF GWQ QD P+VQGALEAAVKAICG+ VRVHGAGRTDAGVHA Q Sbjct: 1 MPRYRLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDCVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHCDIAKHFPPGRFRDGLNAHLRPNPIGVLAADVVPDDFEARFSATRRHYLYRITNTRA 120 VAHCDIAKHF P R RDGLNAHLRP+PIGVL A++VPD FEARFSA RRHY+YRI N RA Sbjct: 61 VAHCDIAKHFAPDRLRDGLNAHLRPHPIGVLEAEIVPDSFEARFSARRRHYIYRIANRRA 120 Query: 121 NLALDIGRVWRVPRALDADAMHDAAQRLLGKHDFTTFRDTECQARSPEKTLDQLDVTREG 180 NLA+D+GRVWRVPR LD +AMHDAAQRLLGKHDFTTFRDTECQA+SPEKTLDQLDV R G Sbjct: 121 NLAIDVGRVWRVPRPLDTEAMHDAAQRLLGKHDFTTFRDTECQAKSPEKTLDQLDVVRNG 180 Query: 181 DAVNIVTSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARNRAACGPVAPPDGLYL 240 D V+I+T ARS+LHSQVRSMVGSLVWVG GRWSADDL++ALAAR R ACGPVAPPDGLYL Sbjct: 181 DNVSIITLARSYLHSQVRSMVGSLVWVGHGRWSADDLSSALAARRREACGPVAPPDGLYL 240 Query: 241 MRVDY 245 +RVDY Sbjct: 241 VRVDY 245 >ref|YP_319666.1| tRNA pseudouridine synthase A [Nitrobacter winogradskyi Nb-255] sp|Q3SN27.1|TRUA_NITWN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gb|ABA06314.1| tRNA pseudouridine synthase [Nitrobacter winogradskyi Nb-255] Length = 255 Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/245 (82%), Positives = 218/245 (88%) Query: 1 MPRYKLTIEYDGTPFSGWQIQDTAPTVQGALEAAVKAICGEDVRVHGAGRTDAGVHARGQ 60 MPRYKLTIEYDG PF GWQ Q P+VQGALEAAVKAICG+DVRVHGAGRTDAGVHA Q Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQTNGPSVQGALEAAVKAICGDDVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHCDIAKHFPPGRFRDGLNAHLRPNPIGVLAADVVPDDFEARFSATRRHYLYRITNTRA 120 VAHCDIA+HF P R RDGLNAHLRP+PIGVL A++VPD FEARFSA RRHY+YRI N RA Sbjct: 61 VAHCDIARHFMPDRLRDGLNAHLRPHPIGVLEAEIVPDSFEARFSARRRHYIYRIANRRA 120 Query: 121 NLALDIGRVWRVPRALDADAMHDAAQRLLGKHDFTTFRDTECQARSPEKTLDQLDVTREG 180 NLA+D+GRVWRVPR LD +AMH AAQRLLGKHDFTTFRDTECQA+SPEKTLDQLDV R G Sbjct: 121 NLAIDVGRVWRVPRPLDTEAMHAAAQRLLGKHDFTTFRDTECQAKSPEKTLDQLDVIRNG 180 Query: 181 DAVNIVTSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARNRAACGPVAPPDGLYL 240 D V+I+TSARS+LHSQVRSMVGSLVWVG GRW+ADDL+ ALAAR R ACGPVAPPDGLYL Sbjct: 181 DNVSIITSARSYLHSQVRSMVGSLVWVGHGRWNADDLSGALAARRREACGPVAPPDGLYL 240 Query: 241 MRVDY 245 RVDY Sbjct: 241 ARVDY 245 >ref|YP_578881.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14] sp|Q1QH76.1|TRUA_NITHX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gb|ABE64421.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14] Length = 245 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/245 (82%), Positives = 215/245 (87%) Query: 1 MPRYKLTIEYDGTPFSGWQIQDTAPTVQGALEAAVKAICGEDVRVHGAGRTDAGVHARGQ 60 MPRYKLTIEYDG PF GWQ QD P+VQGALEAAVKAICG+ VRVHGAGRTDAGVHA Q Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDAVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHCDIAKHFPPGRFRDGLNAHLRPNPIGVLAADVVPDDFEARFSATRRHYLYRITNTRA 120 VAHCDIAKHF P R RDGLNAHLRP+PIGVL A++VPD FEARFSA RRHY+YRI N RA Sbjct: 61 VAHCDIAKHFAPNRLRDGLNAHLRPHPIGVLTAEIVPDTFEARFSALRRHYVYRIANRRA 120 Query: 121 NLALDIGRVWRVPRALDADAMHDAAQRLLGKHDFTTFRDTECQARSPEKTLDQLDVTREG 180 NLA+D+G VWRVPR LD AMH AAQRL+GKHDFTTFRDTECQA+SPEKTLDQLDV R G Sbjct: 121 NLAIDVGHVWRVPRPLDTLAMHAAAQRLIGKHDFTTFRDTECQAKSPEKTLDQLDVVRNG 180 Query: 181 DAVNIVTSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARNRAACGPVAPPDGLYL 240 D V IVTSARSFLHSQVRSMVGSLVWVG GRWSADDL+ ALA R R ACGPVAPPDGLYL Sbjct: 181 DTVTIVTSARSFLHSQVRSMVGSLVWVGHGRWSADDLSNALAERRREACGPVAPPDGLYL 240 Query: 241 MRVDY 245 +RVDY Sbjct: 241 VRVDY 245 >ref|YP_530697.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18] sp|Q21B58.1|TRUA_RHOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gb|ABD86378.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18] Length = 245 Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/245 (82%), Positives = 223/245 (91%) Query: 1 MPRYKLTIEYDGTPFSGWQIQDTAPTVQGALEAAVKAICGEDVRVHGAGRTDAGVHARGQ 60 MPRYKL IEYDG P+ GWQIQD P+VQGALE AVKAICG+ VRV+GAGRTDAGVHA Q Sbjct: 1 MPRYKLIIEYDGAPYCGWQIQDNGPSVQGALETAVKAICGKFVRVNGAGRTDAGVHALAQ 60 Query: 61 VAHCDIAKHFPPGRFRDGLNAHLRPNPIGVLAADVVPDDFEARFSATRRHYLYRITNTRA 120 VAHCDIAK F PGR RDGLNAHLRP+PIGVL+A++VPDDFEARFSA +RHY+YRI+N RA Sbjct: 61 VAHCDIAKEFAPGRLRDGLNAHLRPHPIGVLSAEIVPDDFEARFSAIKRHYVYRISNRRA 120 Query: 121 NLALDIGRVWRVPRALDADAMHDAAQRLLGKHDFTTFRDTECQARSPEKTLDQLDVTREG 180 NLAL IG+VWR+PR LD DAMH AAQRL+GKHDFTTFRDTECQA+SP+KTLDQLDV R+G Sbjct: 121 NLALQIGKVWRLPRRLDTDAMHAAAQRLVGKHDFTTFRDTECQAKSPDKTLDQLDVIRDG 180 Query: 181 DAVNIVTSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARNRAACGPVAPPDGLYL 240 D V+I+TSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAAR R ACGPVAPPDGLYL Sbjct: 181 DNVSIITSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRTACGPVAPPDGLYL 240 Query: 241 MRVDY 245 ++VDY Sbjct: 241 VKVDY 245 >ref|NP_774747.1| tRNA pseudouridine synthase A [Bradyrhizobium japonicum USDA 110] dbj|BAC53372.1| tRNA pseudouridine synthase I [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/245 (83%), Positives = 222/245 (90%) Query: 1 MPRYKLTIEYDGTPFSGWQIQDTAPTVQGALEAAVKAICGEDVRVHGAGRTDAGVHARGQ 60 MPRYKLTIEYDG PF GWQ+QDT P+VQGALEAAVKA+ G D+RVHGAGRTDAGVHARGQ Sbjct: 8 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 67 Query: 61 VAHCDIAKHFPPGRFRDGLNAHLRPNPIGVLAADVVPDDFEARFSATRRHYLYRITNTRA 120 VAH DI K FPPGRFRDGLNAHLRP+PI VL A++VPD FEARFSA +RHY YRI NTRA Sbjct: 68 VAHVDIEKQFPPGRFRDGLNAHLRPHPIAVLEAEIVPDTFEARFSAVKRHYRYRIVNTRA 127 Query: 121 NLALDIGRVWRVPRALDADAMHDAAQRLLGKHDFTTFRDTECQARSPEKTLDQLDVTREG 180 NLALDIG WRVPR LD+DAMH AA+RLLGKHDFTTFRDTECQA+SPEKTLDQLDV R+G Sbjct: 128 NLALDIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSPEKTLDQLDVLRDG 187 Query: 181 DAVNIVTSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARNRAACGPVAPPDGLYL 240 + I+TSARSFLHSQVRSMVGSLVWVGEGRW+ADDL+AALAARNRAACG VAPPDGLYL Sbjct: 188 REITIITSARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLYL 247 Query: 241 MRVDY 245 ++VDY Sbjct: 248 VKVDY 252