BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0086.p         (175 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum U...   332   1e-89
ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp....   318   2e-85
ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X...   315   2e-84
ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS ...   315   2e-84
ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winog...   313   5e-84

>ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110]
 sp|Q89BN9.1|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 174

 Score =  332 bits (852), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 162/173 (93%), Positives = 167/173 (96%)

Query: 1   MALREIIILPDKQLRLVSKPIEKVTPEIRKLADDMLETMYDAPGIGLAAIQVAQPLRLIT 60
           MALREIIILPDKQLRLVSKPIEKVT EIRKLADDM ETMYDAPGIGLAAIQ+AQPLRLIT
Sbjct: 1   MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60

Query: 61  MDLAKRDENGETTAKPRVFINPEIVARSEELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
           MDLAKRDENGET  +PRVFINPE++A SEELSVYEEGCLSIPEYYEEVERPA+VRVRFTD
Sbjct: 61  MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120

Query: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVFKKFEKAAKRA 173
           LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRV KKFEKAAKRA
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKRA 173


>ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
 gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
          Length = 175

 Score =  318 bits (815), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/175 (86%), Positives = 166/175 (94%)

Query: 1   MALREIIILPDKQLRLVSKPIEKVTPEIRKLADDMLETMYDAPGIGLAAIQVAQPLRLIT 60
           MA+REIIILPDKQLRLVS+PIEKVTPEIRKLADDM ETMYDAPGIGLA IQ+AQPLR+IT
Sbjct: 1   MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  MDLAKRDENGETTAKPRVFINPEIVARSEELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
           MDLA+RDE+GE   +PR+FINPEI++ SEELSVYEEGCLSIPEYYEEVERPARVR+RFTD
Sbjct: 61  MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120

Query: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVFKKFEKAAKRAAE 175
           LDGK+HEEDAEGL+ATCIQHEIDHLNGVLFVDYLSKLKRDRV KKF KAAK AA+
Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAKLAAK 175


>ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14]
 sp|Q1QH78.1|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14]
          Length = 175

 Score =  315 bits (807), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/175 (86%), Positives = 164/175 (93%)

Query: 1   MALREIIILPDKQLRLVSKPIEKVTPEIRKLADDMLETMYDAPGIGLAAIQVAQPLRLIT 60
           MA+REIIILPDKQLRLVS+PIE VTPEIRKLADDM ETMYDAPGIGLA IQ+AQPLR+IT
Sbjct: 1   MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  MDLAKRDENGETTAKPRVFINPEIVARSEELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
           MDLA+RDE GE T +PR+FINPEI++ SEELS YEEGCLSIPEYYEEVERPARVRVRFTD
Sbjct: 61  MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVFKKFEKAAKRAAE 175
           LDGKVHEEDAEG+YATCIQHEIDHLNGVLFVD++SKLKRDRV KKF KAAK AA+
Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAKLAAK 175


>ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS 278]
 sp|A4YLB9.1|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
           sp. ORS 278]
          Length = 175

 Score =  315 bits (807), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/175 (86%), Positives = 163/175 (93%)

Query: 1   MALREIIILPDKQLRLVSKPIEKVTPEIRKLADDMLETMYDAPGIGLAAIQVAQPLRLIT 60
           M+LREIIILPD+QLRLVSKP+EKVTPEIR+L DDM +TMYDAPGIGLAAIQVAQPLR+IT
Sbjct: 1   MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  MDLAKRDENGETTAKPRVFINPEIVARSEELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
           MDLAK D  GET  +PRVFINPEI+A+S+ELSVYEEGCLSIPEYYEEVERPARVRVRFTD
Sbjct: 61  MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVFKKFEKAAKRAAE 175
           LDG V EEDAEGLYATCIQHEIDHLNGVLF+DYLSKLKRDRV KKF KAAKRA E
Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKRAGE 175


>ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winogradskyi Nb-255]
 gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255]
          Length = 187

 Score =  313 bits (803), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 150/175 (85%), Positives = 164/175 (93%)

Query: 1   MALREIIILPDKQLRLVSKPIEKVTPEIRKLADDMLETMYDAPGIGLAAIQVAQPLRLIT 60
           MA+REIIILPDKQLRLVS+PIE VTPEIRKLADDM ETMYDAPGIGLA IQ+AQPLR++T
Sbjct: 13  MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72

Query: 61  MDLAKRDENGETTAKPRVFINPEIVARSEELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120
           MDLA+RDE GE T +PRVFINPEI++ SEELSVYEEGCLSIPEYYE VERP+RVR+RFTD
Sbjct: 73  MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132

Query: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVFKKFEKAAKRAAE 175
           LDGKVHEEDAEGL+ATCIQHEIDHLNGVLFVD+LSKLKRDRV KKF KAAK AA+
Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAKFAAK 187