BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0085.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774750.1| hypothetical protein blr8110 [Bradyrhizobium ja... 658 0.0 ref|YP_001243108.1| hypothetical protein BBta_7338 [Bradyrhizobi... 649 0.0 ref|YP_001202932.1| putative RmuC family protein [Bradyrhizobium... 639 0.0 ref|ZP_07025799.1| protein of unknown function DUF195 [Afipia sp... 626 e-177 ref|ZP_08627482.1| DNA recombination protein RmuC [Bradyrhizobia... 623 e-176 >ref|NP_774750.1| hypothetical protein blr8110 [Bradyrhizobium japonicum USDA 110] dbj|BAC53375.1| blr8110 [Bradyrhizobium japonicum USDA 110] Length = 411 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/402 (82%), Positives = 362/402 (90%), Gaps = 2/402 (0%) Query: 1 MNEILLTIGDLPVRVSDALIGLGALALILLLAIAVVIARASRRGAELAMAQAIRADELEE 60 MNEI+ GD PVR DALIG G L LILL+ IAVVIAR+ RRGAELAMA AIRADELEE Sbjct: 12 MNEIIFVAGDWPVRTIDALIGFGVLVLILLVVIAVVIARSGRRGAELAMANAIRADELEE 71 Query: 61 RLADMLRAQSESSGRVDAMAQALAGRQAEMARAVNERLDSVTHRVGQSMEQSTRNTMDSL 120 R++ ML AQSE+SGRVDAM QALAGRQAEMARAVNERLDSVTHRVGQSME STRNTM+SL Sbjct: 72 RISQMLHAQSEASGRVDAMTQALAGRQAEMARAVNERLDSVTHRVGQSMEHSTRNTMESL 131 Query: 121 RVLHERLGIIDHAHKNLNELTTQVTTLRDVLANKQSRGAFGQARMEAIVQDGMPKGSFEF 180 LHERLGIID+AHKNL +LTTQVTTLRDVLANKQSRGAFGQARMEAIVQDG+PKG++EF Sbjct: 132 HALHERLGIIDNAHKNLTDLTTQVTTLRDVLANKQSRGAFGQARMEAIVQDGLPKGAYEF 191 Query: 181 QYTLTSGKRPDCVVFLPDQRPLCIDAKFPLEAMTALHDARSDEERKSACQRLRADVLKHV 240 Q+TL++GKRPDCVVFLPDQRPLCIDAKFPLEAMTALHDAR+DEE++ A QRLR DV+KHV Sbjct: 192 QFTLSTGKRPDCVVFLPDQRPLCIDAKFPLEAMTALHDARTDEEKRIATQRLRGDVMKHV 251 Query: 241 SDIAEKYLIPGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV 300 SDIAEKYL+ GETQ+ ALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV Sbjct: 252 SDIAEKYLVTGETQEMALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV 311 Query: 301 MQQILKDARIRDAADQIRNEVMHLGDDLGRLRDRVLKLQTHFGQVNEDVRQILISADKIE 360 MQQI+KDAR+RDAADQIR EV+ LGDDLGRLRDRVLKLQ HF VNEDVRQ+LISADKIE Sbjct: 312 MQQIMKDARMRDAADQIRTEVIKLGDDLGRLRDRVLKLQKHFADVNEDVRQVLISADKIE 371 Query: 361 KRAGRIEELDFSKSETPIEVPRFVKGSTSDLFPAPRKLQAGE 402 KRAGRIEELDFSK++ P E P V ++LF PRKLQAGE Sbjct: 372 KRAGRIEELDFSKADAPAEGPHLVATGAAELF--PRKLQAGE 411 >ref|YP_001243108.1| hypothetical protein BBta_7338 [Bradyrhizobium sp. BTAi1] gb|ABQ39202.1| hypothetical protein BBta_7338 [Bradyrhizobium sp. BTAi1] Length = 410 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/404 (78%), Positives = 362/404 (89%), Gaps = 2/404 (0%) Query: 1 MNEILLTIGDLPVRVSDALIGLGALALILLLAIAVVIARASRRGAELAMAQAIRADELEE 60 +N +++ IGDLP+R SDALIG G L L+LL+ I +AR+SRRG E A QA R DELE+ Sbjct: 7 LNPVIVMIGDLPLRASDALIGFGVLVLLLLVMIVAAVARSSRRGGEFAAQQASRTDELEQ 66 Query: 61 RLADMLRAQSESSGRVDAMAQALAGRQAEMARAVNERLDSVTHRVGQSMEQSTRNTMDSL 120 R ++M+R QSE+SGRVDAMAQ LAGRQ ++AR+VNERLD+VTHRVGQSMEQSTR+TMDSL Sbjct: 67 RFSEMIRVQSEASGRVDAMAQLLAGRQVDLARSVNERLDAVTHRVGQSMEQSTRHTMDSL 126 Query: 121 RVLHERLGIIDHAHKNLNELTTQVTTLRDVLANKQSRGAFGQARMEAIVQDGMPKGSFEF 180 RVLHERLGIID+AH++L+ELTTQV+TLRDVLANKQSRGAFGQARMEAIVQDG+PKGS+ F Sbjct: 127 RVLHERLGIIDNAHRDLSELTTQVSTLRDVLANKQSRGAFGQARMEAIVQDGLPKGSYAF 186 Query: 181 QYTLTSGKRPDCVVFLPDQRPLCIDAKFPLEAMTALHDARSDEERKSACQRLRADVLKHV 240 QYTL SGKRPDCVVFLPD RPLCIDAKFPLEA+TALHDA ++EE+++A QRLR+DVL+HV Sbjct: 187 QYTLASGKRPDCVVFLPDARPLCIDAKFPLEAVTALHDAETEEEKRAAAQRLRSDVLRHV 246 Query: 241 SDIAEKYLIPGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV 300 +DIAEKYL+ GETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV Sbjct: 247 NDIAEKYLVVGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV 306 Query: 301 MQQILKDARIRDAADQIRNEVMHLGDDLGRLRDRVLKLQTHFGQVNEDVRQILISADKIE 360 MQQI+KDARIRDAADQIRNEV+HLGDDLGRLR+RVLKLQ HFG V ED+RQILISADKIE Sbjct: 307 MQQIMKDARIRDAADQIRNEVIHLGDDLGRLRERVLKLQKHFGDVGEDIRQILISADKIE 366 Query: 361 KRAGRIEELDFSKSETPIEVPRFVK--GSTSDLFPAPRKLQAGE 402 KRA RIEELDFSK + P+E PR G+T DLFP ++QAGE Sbjct: 367 KRAARIEELDFSKQDAPVESPRIAPAVGTTPDLFPLAGRIQAGE 410 >ref|YP_001202932.1| putative RmuC family protein [Bradyrhizobium sp. ORS 278] emb|CAL74694.1| conserved hypothetical protein; putative RmuC family protein [Bradyrhizobium sp. ORS 278] Length = 414 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/404 (76%), Positives = 358/404 (88%), Gaps = 2/404 (0%) Query: 1 MNEILLTIGDLPVRVSDALIGLGALALILLLAIAVVIARASRRGAELAMAQAIRADELEE 60 +N +++ IGDLP+R SDALIG G + L+LL I + +AR+ RR A LA QA+R +ELE+ Sbjct: 11 LNPVVVMIGDLPIRASDALIGFGVMVLLLLAMIGLAVARSGRRSAVLAAQQAMRTEELEQ 70 Query: 61 RLADMLRAQSESSGRVDAMAQALAGRQAEMARAVNERLDSVTHRVGQSMEQSTRNTMDSL 120 R +M+R QSE+SGRVDAMAQ LAGRQ ++AR+VNERLD+VTHRVGQSMEQ+TR+TMDSL Sbjct: 71 RFGEMIRVQSEASGRVDAMAQLLAGRQVDLARSVNERLDAVTHRVGQSMEQTTRHTMDSL 130 Query: 121 RVLHERLGIIDHAHKNLNELTTQVTTLRDVLANKQSRGAFGQARMEAIVQDGMPKGSFEF 180 RVLHERLGIID+AH++L+ELTTQV+TLRDVLANKQSRGAFGQARMEAIVQDG+P+GS+ F Sbjct: 131 RVLHERLGIIDNAHRDLSELTTQVSTLRDVLANKQSRGAFGQARMEAIVQDGLPRGSYAF 190 Query: 181 QYTLTSGKRPDCVVFLPDQRPLCIDAKFPLEAMTALHDARSDEERKSACQRLRADVLKHV 240 Q+TL SGKRPDCVVFLPD RPLCIDAKFPLEA+TALHDA +++E+++A Q+LR DVL+HV Sbjct: 191 QHTLASGKRPDCVVFLPDTRPLCIDAKFPLEAVTALHDAETEDEKRAAAQQLRTDVLRHV 250 Query: 241 SDIAEKYLIPGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV 300 +DIAEKYL+ GETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV Sbjct: 251 NDIAEKYLVVGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV 310 Query: 301 MQQILKDARIRDAADQIRNEVMHLGDDLGRLRDRVLKLQTHFGQVNEDVRQILISADKIE 360 MQQI+KDARIRDAADQIRNEV+HLGDDLGRLR+RVLKLQ HFG V ED+RQILISADKIE Sbjct: 311 MQQIMKDARIRDAADQIRNEVIHLGDDLGRLRERVLKLQKHFGDVGEDIRQILISADKIE 370 Query: 361 KRAGRIEELDFSKSETPIEVPRFVKGS--TSDLFPAPRKLQAGE 402 KRA RIEELDFSK + +E PR G+ T DL P +LQAGE Sbjct: 371 KRAARIEELDFSKPDAAVESPRIAPGTGATPDLSPLAGRLQAGE 414 >ref|ZP_07025799.1| protein of unknown function DUF195 [Afipia sp. 1NLS2] gb|EFI52941.1| protein of unknown function DUF195 [Afipia sp. 1NLS2] Length = 401 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 317/403 (78%), Positives = 355/403 (88%), Gaps = 3/403 (0%) Query: 1 MNEILLTIGDLPVRVSDALIGLGALALILLLAIAVVIARASRRGAELAMAQAIRADELEE 60 MNEIL +IGD+PVR AL+G G LAL+LL IA++++R+ R+ A LAMAQAIRADELEE Sbjct: 1 MNEILFSIGDVPVRTGAALLGFGVLALLLLAIIALIMSRSGRKTAALAMAQAIRADELEE 60 Query: 61 RLADMLRAQSESSGRVDAMAQALAGRQAEMARAVNERLDSVTHRVGQSMEQSTRNTMDSL 120 RL+++LR Q+E++GRV M QAL GRQAEMARAVNERLDSVTHRVGQSMEQ+TRNTMDSL Sbjct: 61 RLSEVLRIQNEAAGRVHEMGQALVGRQAEMARAVNERLDSVTHRVGQSMEQTTRNTMDSL 120 Query: 121 RVLHERLGIIDHAHKNLNELTTQVTTLRDVLANKQSRGAFGQARMEAIVQDGMPKGSFEF 180 R LHERLGIID+AHKNL +LTTQVTTLRDVLANKQ+RGAFGQARMEAIVQDG+PKGSF F Sbjct: 121 RALHERLGIIDNAHKNLTDLTTQVTTLRDVLANKQARGAFGQARMEAIVQDGLPKGSFAF 180 Query: 181 QYTLTSGKRPDCVVFLPDQRPLCIDAKFPLEAMTALHDARSDEERKSACQRLRADVLKHV 240 Q+TLT+ KRPDCVVFLPDQRPLCIDAKFPLEA+TAL +A+SD+ERK A QRLR DV+KHV Sbjct: 181 QHTLTNNKRPDCVVFLPDQRPLCIDAKFPLEAVTALREAKSDDERKFASQRLRQDVMKHV 240 Query: 241 SDIAEKYLIPGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV 300 +DIA+KYLIPGETQDTALMFVPSESVYAEIHDGFDDV+QKAYRAR+VLVSPSLLMLAIQV Sbjct: 241 ADIADKYLIPGETQDTALMFVPSESVYAEIHDGFDDVVQKAYRARIVLVSPSLLMLAIQV 300 Query: 301 MQQILKDARIRDAADQIRNEVMHLGDDLGRLRDRVLKLQTHFGQVNEDVRQILISADKIE 360 MQQI+KDAR+RDAA QIR EVM + DDL RLR+RVLKLQ HF Q NEDVRQILISADKIE Sbjct: 301 MQQIMKDARMRDAAGQIRTEVMTMSDDLARLRERVLKLQNHFNQANEDVRQILISADKIE 360 Query: 361 KRAGRIEELDFSKSETPIEVPRFVKGSTSDLFPA-PRKLQAGE 402 KRAGRIEELDF+ + P PR LFP PRKLQAGE Sbjct: 361 KRAGRIEELDFTTHDDP--PPRAEGTPAPSLFPVQPRKLQAGE 401 >ref|ZP_08627482.1| DNA recombination protein RmuC [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09827.1| DNA recombination protein RmuC [Bradyrhizobiaceae bacterium SG-6C] Length = 418 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 327/404 (80%), Positives = 363/404 (89%), Gaps = 4/404 (0%) Query: 1 MNEILLTIGDLPVRVSDALIGLGALALILLLAIAVVIARASRRGAELAMAQAIRADELEE 60 MNEIL +GD+PVR+S ALI GALAL+LLL IA+VIAR+ +GAE AMAQA+RADELEE Sbjct: 17 MNEILFILGDVPVRMSAALIAFGALALLLLLIIAIVIARSGAKGAEAAMAQAVRADELEE 76 Query: 61 RLADMLRAQSESSGRVDAMAQALAGRQAEMARAVNERLDSVTHRVGQSMEQSTRNTMDSL 120 RLA++LR Q+E++GRV M QALAGRQA+MARAVNERLDSVTHRVGQSMEQ+TRNTMDSL Sbjct: 77 RLAEVLRIQNEAAGRVHEMGQALAGRQADMARAVNERLDSVTHRVGQSMEQTTRNTMDSL 136 Query: 121 RVLHERLGIIDHAHKNLNELTTQVTTLRDVLANKQSRGAFGQARMEAIVQDGMPKGSFEF 180 R LHERLGIID+AHKNL +LT+QVTTLRDVLANKQSRGAFGQARMEAIVQDGMPK S+ F Sbjct: 137 RALHERLGIIDNAHKNLTDLTSQVTTLRDVLANKQSRGAFGQARMEAIVQDGMPKDSYAF 196 Query: 181 QYTLTSGKRPDCVVFLPDQRPLCIDAKFPLEAMTALHDARSDEERKSACQRLRADVLKHV 240 Q+TL++ RPDCV+FLPDQRPLC+DAKFPLEA TAL DAR+DEE+K+A QRLR DV+KHV Sbjct: 197 QHTLSNRTRPDCVIFLPDQRPLCVDAKFPLEAFTALRDARTDEEKKAATQRLRQDVMKHV 256 Query: 241 SDIAEKYLIPGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARVVLVSPSLLMLAIQV 300 +DIA+KYLIPGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRAR+VLVSPSLLMLAIQV Sbjct: 257 NDIADKYLIPGETQDTALMFVPSESVYAEIHDGFDDVIQKAYRARIVLVSPSLLMLAIQV 316 Query: 301 MQQILKDARIRDAADQIRNEVMHLGDDLGRLRDRVLKLQTHFGQVNEDVRQILISADKIE 360 MQQILKDAR+RDAAD IR EVMH+ DDLGRLR+RVLKLQ FG VNEDVRQILISADKIE Sbjct: 317 MQQILKDARMRDAADLIRTEVMHMSDDLGRLRERVLKLQKDFGNVNEDVRQILISADKIE 376 Query: 361 KRAGRIEELDFSKSETPIEVPRFVKGSTSDLFPAP--RKLQAGE 402 KRAGRIEELDFSK P + PR V S+SDLFP RKLQAGE Sbjct: 377 KRAGRIEELDFSKGSEPADAPRVV--SSSDLFPPHPLRKLQAGE 418