BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0061.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774768.1| helicase [Bradyrhizobium japonicum USDA 110] >g... 647 0.0 ref|ZP_08627499.1| ATP-dependent helicase HrpB [Bradyrhizobiacea... 629 e-178 ref|YP_783717.1| ATP-dependent helicase HrpB [Rhodopseudomonas p... 608 e-172 ref|YP_534695.1| ATP-dependent helicase HrpB [Rhodopseudomonas p... 606 e-171 ref|YP_001243122.1| ATP-dependent helicase [Bradyrhizobium sp. B... 602 e-170 >ref|NP_774768.1| helicase [Bradyrhizobium japonicum USDA 110] dbj|BAC53393.1| helicase [Bradyrhizobium japonicum USDA 110] Length = 811 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/394 (81%), Positives = 355/394 (90%), Gaps = 2/394 (0%) Query: 1 MIVDSARFGMGEEAAEIAAVLTERGLGGDSVDLDVRLDQFRRDRSQRASSARSMAARWAA 60 MIVDS R G G +AAEIAA+LTERGLGGDS DL+ R DQFRRDRS RASSAR +A RWA+ Sbjct: 418 MIVDSHRAGAGGDAAEIAAILTERGLGGDSADLEHRRDQFRRDRSPRASSARDLARRWAS 477 Query: 61 QVKSAAGEA--RDLSTGVMLAFAFPDRVARNRGNGSFVLANGRGAAVEQTAALARLPYIA 118 QV ++ E DLSTG+MLA+AFPDRVARNRGNGSFVLANGRGAAVEQT++LAR PYIA Sbjct: 478 QVAASEKEGPQEDLSTGLMLAYAFPDRVARNRGNGSFVLANGRGAAVEQTSSLARAPYIA 537 Query: 119 VAELTGTAASGRILLAAPITQEEIEQRFADQIENVEEVTFDRGAMALRARRRRSLHAITL 178 + E+TGTAASGRILLAA IT+++IE+ FA+ IE V+E++FDRGAMALRARR+R+LHAITL Sbjct: 538 IGEMTGTAASGRILLAAQITEDDIERHFAEHIETVDEISFDRGAMALRARRKRALHAITL 597 Query: 179 SEAPMPLQPSAETARVFADGLIAAGLDRLPWSKHSKQWRDRVMFLRKAEDESWPDLSDTA 238 SEA + + PS ETAR+FADGLIAAGLDRLPWSK ++QWRDRVMFLRKAE +SWPDLSD Sbjct: 598 SEATLAVSPSEETARIFADGLIAAGLDRLPWSKAAEQWRDRVMFLRKAEGDSWPDLSDDG 657 Query: 239 LAARADDWLVGALYDKTALKDLSAGDLSDALMALLPWELRARLDREAPTHFEAPTGTQLA 298 L R DDWLV ALYDK ALKD+SAGDLSDALMALLPWE+RARLDREAPTHFEAPTGT LA Sbjct: 658 LIVRRDDWLVPALYDKIALKDISAGDLSDALMALLPWEMRARLDREAPTHFEAPTGTVLA 717 Query: 299 IDYEAEQGPTIAVRLQELFGLNTHPSIAKGAVPLVLELLSPAQRPVQVTRDLPGFWRGSY 358 IDYEAEQGPTIAVRLQELFGLNTHPSIA G VPLVLELLSPAQRPVQVTRDLPGFWRGSY Sbjct: 718 IDYEAEQGPTIAVRLQELFGLNTHPSIAAGKVPLVLELLSPAQRPVQVTRDLPGFWRGSY 777 Query: 359 AAVRSDLRGRYPRHPWPEDPASAMPTRRVKPRGT 392 AAVRSDLRGRYPRHPWPEDPA+A+PTRRVKPRGT Sbjct: 778 AAVRSDLRGRYPRHPWPEDPANALPTRRVKPRGT 811 >ref|ZP_08627499.1| ATP-dependent helicase HrpB [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09753.1| ATP-dependent helicase HrpB [Bradyrhizobiaceae bacterium SG-6C] Length = 839 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 317/397 (79%), Positives = 344/397 (86%), Gaps = 7/397 (1%) Query: 1 MIVDSARFGMGEEAAEIAAVLTERGLGGDSVDLDVRLDQFRRDRSQRASSARSMAARWAA 60 MIVDS R G G+EAA IAA+LTERGLGGDS DLD RLD FRRDRSQRA SAR +A RWA Sbjct: 445 MIVDSHRLGSGDEAALIAAILTERGLGGDSADLDARLDGFRRDRSQRAQSARQLAERWAK 504 Query: 61 QVKSAAGEA-----RDLSTGVMLAFAFPDRVARNRGNGSFVLANGRGAAVEQTAALARLP 115 QV AA E R LSTG+MLA AFPDRVARNRGNGSFVLANGRGA++EQT+ALA+ P Sbjct: 505 QV--AANEPFDVADRSLSTGLMLALAFPDRVARNRGNGSFVLANGRGASIEQTSALAKSP 562 Query: 116 YIAVAELTGTAASGRILLAAPITQEEIEQRFADQIENVEEVTFDRGAMALRARRRRSLHA 175 YIAVAELTGTAA+GRILLAAPITQ EIEQ+FAD I+ +++TFDR AMALRARRR+ LHA Sbjct: 563 YIAVAELTGTAANGRILLAAPITQSEIEQQFADHIQTDDDITFDRSAMALRARRRKKLHA 622 Query: 176 ITLSEAPMPLQPSAETARVFADGLIAAGLDRLPWSKHSKQWRDRVMFLRKAEDESWPDLS 235 ITLSE +P+ PSAETARV ADGLIAAG++RLPWSK +QWRDRVMFLR A E WPDLS Sbjct: 623 ITLSEQTLPVSPSAETARVLADGLIAAGIERLPWSKALRQWRDRVMFLRAASPEDWPDLS 682 Query: 236 DTALAARADDWLVGALYDKTALKDLSAGDLSDALMALLPWELRARLDREAPTHFEAPTGT 295 D+ALA DWLV AL+DKT+L SAGDLSDALM LLPW+ RA+LDREAPTHFEAPTGT Sbjct: 683 DSALADARADWLVPALFDKTSLASFSAGDLSDALMNLLPWDARAKLDREAPTHFEAPTGT 742 Query: 296 QLAIDYEAEQGPTIAVRLQELFGLNTHPSIAKGAVPLVLELLSPAQRPVQVTRDLPGFWR 355 L IDYEAEQGPTIAVRLQELFGLNTHPSIAKG +PLVLELLSPA RPVQVTRDLPGFWR Sbjct: 743 SLPIDYEAEQGPTIAVRLQELFGLNTHPSIAKGKIPLVLELLSPAHRPVQVTRDLPGFWR 802 Query: 356 GSYAAVRSDLRGRYPRHPWPEDPASAMPTRRVKPRGT 392 GSYAAVRSDLRGRYPRHPWPEDPASA+PTRRVKPRGT Sbjct: 803 GSYAAVRSDLRGRYPRHPWPEDPASALPTRRVKPRGT 839 >ref|YP_783717.1| ATP-dependent helicase HrpB [Rhodopseudomonas palustris BisA53] gb|ABJ08737.1| ATP-dependent helicase HrpB [Rhodopseudomonas palustris BisA53] Length = 871 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 313/421 (74%), Positives = 346/421 (82%), Gaps = 29/421 (6%) Query: 1 MIVDSARFGMGEEAAEIAAVLTERGLGGDSVDLDVRLDQFRRDRSQRASSARSMAARWAA 60 MIVDSAR G G+ AA+IAA+LTERGLGGD VDL+ RLDQFRRDRSQRAS+AR MA RWAA Sbjct: 451 MIVDSARLGAGDHAADIAAILTERGLGGDGVDLEHRLDQFRRDRSQRASAARQMAQRWAA 510 Query: 61 QVKSAA-----GEAR------------------------DLSTGVMLAFAFPDRVARNRG 91 QV S++ GE R +L+TG+MLAFAFPDRVA+NRG Sbjct: 511 QVASSSPSPLVGEGRGGGYPEARLPLRTLTPGPSPQGGGELTTGLMLAFAFPDRVAKNRG 570 Query: 92 NGSFVLANGRGAAVEQTAALARLPYIAVAELTGTAASGRILLAAPITQEEIEQRFADQIE 151 NGSFVLANGRGAAVE +AALAR PY+AVAELTGTAA+GRILLAAPI +IE FA+QIE Sbjct: 571 NGSFVLANGRGAAVEPSAALARAPYLAVAELTGTAAAGRILLAAPIALADIEAHFAEQIE 630 Query: 152 NVEEVTFDRGAMALRARRRRSLHAITLSEAPMPLQPSAETARVFADGLIAAGLDRLPWSK 211 + ++++FDR AMALR R+RRSLHAITLSEAP L+PS TARV A+GL+AAGLD+LPWSK Sbjct: 631 SRDDISFDRAAMALRGRKRRSLHAITLSEAPSALKPSEATARVLAEGLVAAGLDKLPWSK 690 Query: 212 HSKQWRDRVMFLRKAEDESWPDLSDTALAARADDWLVGALYDKTALKDLSAGDLSDALMA 271 QWR RVMFLR AE E WPDLSD ALA R +DWLV AL+DK ALKDLSAGDLSDALM Sbjct: 691 ALTQWRGRVMFLRAAEGEPWPDLSDAALAERREDWLVPALFDKVALKDLSAGDLSDALMG 750 Query: 272 LLPWELRARLDREAPTHFEAPTGTQLAIDYEAEQGPTIAVRLQELFGLNTHPSIAKGAVP 331 LLPWE RARL+REAPTHFEAPTG+ LAIDYEAEQGPTIAVRLQELFGL THPS+A G VP Sbjct: 751 LLPWEQRARLEREAPTHFEAPTGSALAIDYEAEQGPTIAVRLQELFGLTTHPSVAGGKVP 810 Query: 332 LVLELLSPAQRPVQVTRDLPGFWRGSYAAVRSDLRGRYPRHPWPEDPASAMPTRRVKPRG 391 LVLELLSPA RPVQVTRDLPGFWRGSYA VR+DLRGRYPRHPWP+DPASA PTRR KPRG Sbjct: 811 LVLELLSPAHRPVQVTRDLPGFWRGSYAGVRADLRGRYPRHPWPDDPASAPPTRRAKPRG 870 Query: 392 T 392 T Sbjct: 871 T 871 >ref|YP_534695.1| ATP-dependent helicase HrpB [Rhodopseudomonas palustris BisB18] gb|ABD90376.1| ATP-dependent helicase HrpB [Rhodopseudomonas palustris BisB18] Length = 877 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 318/439 (72%), Positives = 351/439 (79%), Gaps = 47/439 (10%) Query: 1 MIVDSARFGMGEEAAEIAAVLTERGLGGDSVDLDVRLDQFRRDRSQRASSARSMAARWAA 60 MIVD+ R G GE+AA IAA+LTERGLGGDSVDLD RL+QFRRDRSQRA SAR +A RWAA Sbjct: 439 MIVDAQRQGCGEDAAAIAAILTERGLGGDSVDLDARLEQFRRDRSQRAISARQLAQRWAA 498 Query: 61 QVKSA--AGEAR-----------------------------------------DLSTGVM 77 + AGE R +L+TG M Sbjct: 499 PSAPSPLAGEGRGGGSTSTASVRGTPTPNPSPQGGGESRRARGEAAPSQQGAGELTTGGM 558 Query: 78 LAFAFPDRVARNRGNGSFVLANGRGAAVEQTAALARLPYIAVAELTGTAASGRILLAAPI 137 LA AFPDRVA+NRGNGSFVLANGRGAA+++TAALAR PYIAVAELTGTAA+GRILLAAPI Sbjct: 559 LALAFPDRVAKNRGNGSFVLANGRGAAIDKTAALARAPYIAVAELTGTAANGRILLAAPI 618 Query: 138 TQEEIEQRFADQIENVEEVTFDRGAMALRARRRRSLHAITLSEAPMPLQPSAETARVFAD 197 T EEIE RFA +I+ V++++FDR A+ALR RR+R+LHAITLSEAPM + PS TARVFAD Sbjct: 619 TLEEIEARFAAEIDAVDDISFDRVALALRGRRKRTLHAITLSEAPMAVVPSEATARVFAD 678 Query: 198 GLIAAGLDRLPWSKHSKQWRDRVMFLRKAEDES----WPDLSDTALAARADDWLVGALYD 253 GLIAAGLD+LPWSK KQWRDRV FLRKAE ++ WPDLSD ALA + WLV AL+D Sbjct: 679 GLIAAGLDKLPWSKSLKQWRDRVTFLRKAEGDASQKLWPDLSDAALAEAREAWLVPALFD 738 Query: 254 KTALKDLSAGDLSDALMALLPWELRARLDREAPTHFEAPTGTQLAIDYEAEQGPTIAVRL 313 KTALKD+SAGDLSDALM LLPW+LRARL+REAPTHFEAPTGTQLAIDYEAEQGPTIAVRL Sbjct: 739 KTALKDVSAGDLSDALMGLLPWDLRARLEREAPTHFEAPTGTQLAIDYEAEQGPTIAVRL 798 Query: 314 QELFGLNTHPSIAKGAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRSDLRGRYPRHP 373 QELFGL THPS+A GAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVR+DLRGRYPRHP Sbjct: 799 QELFGLTTHPSLAGGAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRTDLRGRYPRHP 858 Query: 374 WPEDPASAMPTRRVKPRGT 392 WPEDPA A PTRRVKPRGT Sbjct: 859 WPEDPAGAPPTRRVKPRGT 877 >ref|YP_001243122.1| ATP-dependent helicase [Bradyrhizobium sp. BTAi1] gb|ABQ39216.1| ATP-dependent helicase [Bradyrhizobium sp. BTAi1] Length = 824 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 300/374 (80%), Positives = 331/374 (88%), Gaps = 2/374 (0%) Query: 21 LTERGLGGDSVDLDVRLDQFRRDRSQRASSARSMAARWAAQVKSAAGEARD--LSTGVML 78 LTERGLGGDSVDL+VRLDQFRRDRS RA SAR +A RWA QV ++A D L+TG+ML Sbjct: 451 LTERGLGGDSVDLEVRLDQFRRDRSARAQSARDLARRWAQQVATSASPQDDGALTTGLML 510 Query: 79 AFAFPDRVARNRGNGSFVLANGRGAAVEQTAALARLPYIAVAELTGTAASGRILLAAPIT 138 AFAFPDRVARNRGNGSFVLANGRGAAVEQT++LAR+PYIAV ELTGTAA+GRILLAAP+ Sbjct: 511 AFAFPDRVARNRGNGSFVLANGRGAAVEQTSSLARVPYIAVGELTGTAANGRILLAAPLA 570 Query: 139 QEEIEQRFADQIENVEEVTFDRGAMALRARRRRSLHAITLSEAPMPLQPSAETARVFADG 198 E+IE+ FA IE +EV+FDR AM LRARRRR LHAITL++AP+ L PS ETA +FADG Sbjct: 571 IEDIERHFAAHIEAKDEVSFDRDAMTLRARRRRKLHAITLADAPVALTPSEETAHIFADG 630 Query: 199 LIAAGLDRLPWSKHSKQWRDRVMFLRKAEDESWPDLSDTALAARADDWLVGALYDKTALK 258 + AAGLDRLPWSK +KQWRDRVMFLRKAE +SWPDLSDT L R DDWLV L +K +LK Sbjct: 631 ICAAGLDRLPWSKAAKQWRDRVMFLRKAEGDSWPDLSDTGLIERRDDWLVPLLANKISLK 690 Query: 259 DLSAGDLSDALMALLPWELRARLDREAPTHFEAPTGTQLAIDYEAEQGPTIAVRLQELFG 318 D+S GD+SDA+MALLPW+LRARLDREAPTHFEAPTGT LAIDYEAEQGPTIAVRLQELFG Sbjct: 691 DISPGDVSDAVMALLPWDLRARLDREAPTHFEAPTGTMLAIDYEAEQGPTIAVRLQELFG 750 Query: 319 LNTHPSIAKGAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRSDLRGRYPRHPWPEDP 378 LN HPSIA+GAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRSDLRGRYPRHPWP+DP Sbjct: 751 LNIHPSIARGAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRSDLRGRYPRHPWPDDP 810 Query: 379 ASAMPTRRVKPRGT 392 A+A PTRR KPRGT Sbjct: 811 ATAQPTRRAKPRGT 824