BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0060.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_575805.1| ATP-dependent helicase HrpB [Nitrobacter hambur... 431 e-119 ref|NP_774768.1| helicase [Bradyrhizobium japonicum USDA 110] >g... 430 e-118 ref|YP_001243122.1| ATP-dependent helicase [Bradyrhizobium sp. B... 430 e-118 ref|YP_534695.1| ATP-dependent helicase HrpB [Rhodopseudomonas p... 426 e-117 ref|NP_945888.1| ATP-dependent helicase HrpB [Rhodopseudomonas p... 426 e-117 >ref|YP_575805.1| ATP-dependent helicase HrpB [Nitrobacter hamburgensis X14] gb|ABE61345.1| ATP-dependent helicase HrpB [Nitrobacter hamburgensis X14] Length = 829 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 242/326 (74%), Positives = 252/326 (77%), Gaps = 33/326 (10%) Query: 1 LPRQFDSPLPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVL 60 + + F SPLPID VLDEL RTL N AVLVAPPGAGKTTRVPLALLDA W + KKIIVL Sbjct: 1 MTKTFASPLPIDVVLDELGRTLSASNTAVLVAPPGAGKTTRVPLALLDASWTKSKKIIVL 60 Query: 61 EPRRIAARASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPEL 120 EPRRIAARASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPEL Sbjct: 61 EPRRIAARASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPEL 120 Query: 121 NGVAAVLFDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVV 180 GVAAVLFDEFHERSLDADLGLALARD QTGLREDLRILVMSAT+DGAR+ K LGDAPV+ Sbjct: 121 TGVAAVLFDEFHERSLDADLGLALARDVQTGLREDLRILVMSATIDGARIAKRLGDAPVI 180 Query: 181 ESEGRAFPVETRYVGRKVDAPLERQMAETIAAALXRRRDPPHPNFFGRARARRRG----- 235 ESEGRAFPVETRY+GRK DAPLERQMA+ IA AL G A RR Sbjct: 181 ESEGRAFPVETRYLGRKPDAPLERQMADAIAVALRTEAGSVLAFLPGAAEIRRTQNMLAE 240 Query: 236 RDHR-------------------------XGTRKVVLATSIAETSLTIEGVRIVVDAGLS 270 R H G RKVVLATSIAETSLTIEGVRIVVD S Sbjct: 241 RVHDASVEIVPLFGALDAATQDRAIAPAPKGHRKVVLATSIAETSLTIEGVRIVVD---S 297 Query: 271 GLARVPRYEPDIALTRLETVRASRAA 296 G+ARVPRYEPDI LTRLET+RASRAA Sbjct: 298 GMARVPRYEPDIGLTRLETIRASRAA 323 >ref|NP_774768.1| helicase [Bradyrhizobium japonicum USDA 110] dbj|BAC53393.1| helicase [Bradyrhizobium japonicum USDA 110] Length = 811 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 239/313 (76%), Positives = 255/313 (81%), Gaps = 33/313 (10%) Query: 14 VLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVLEPRRIAARASAER 73 +LD+L RTLE HNAAVLVAPPGAGKTTRVPLALLDAPWA+GKKIIVLEPRRIAARASA+R Sbjct: 1 MLDDLSRTLEAHNAAVLVAPPGAGKTTRVPLALLDAPWAKGKKIIVLEPRRIAARASADR 60 Query: 74 MAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPELNGVAAVLFDEFHE 133 MAK+LGERAGETVGYRVRFGSK+SRATRIEVVTEGIF+RQI+DDPEL+GVAAVLFDEFHE Sbjct: 61 MAKSLGERAGETVGYRVRFGSKISRATRIEVVTEGIFTRQIMDDPELSGVAAVLFDEFHE 120 Query: 134 RSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVVESEGRAFPVETRY 193 RSLDAD+GLALARDAQTGLREDLRILVMSATLDGARV KLLG+APVVESEGRAFPVETRY Sbjct: 121 RSLDADMGLALARDAQTGLREDLRILVMSATLDGARVAKLLGEAPVVESEGRAFPVETRY 180 Query: 194 VGRKVDAPLERQMAETIAAALXRRRDPPHPNFFGRARARR-------RGRDHR------- 239 +GRK DAP+ERQMA+ IA+AL G A RR R +D Sbjct: 181 LGRKADAPIERQMADAIASALRADGGSVLAFLPGAAEIRRTQNFLGERVQDASIEIVPLF 240 Query: 240 ----------------XGTRKVVLATSIAETSLTIEGVRIVVDAGLSGLARVPRYEPDIA 283 GTRKVVLATSIAETSLTIEGVRIVVD SGLARVPRYEPDI Sbjct: 241 GALDAAAQDRAIAPAPKGTRKVVLATSIAETSLTIEGVRIVVD---SGLARVPRYEPDIG 297 Query: 284 LTRLETVRASRAA 296 LTRLETVRASRAA Sbjct: 298 LTRLETVRASRAA 310 >ref|YP_001243122.1| ATP-dependent helicase [Bradyrhizobium sp. BTAi1] gb|ABQ39216.1| ATP-dependent helicase [Bradyrhizobium sp. BTAi1] Length = 824 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 245/326 (75%), Positives = 256/326 (78%), Gaps = 33/326 (10%) Query: 1 LPRQFDSPLPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVL 60 +P +FD+PLPIDAVLD L TLE N AVLVAPPGAGKTTRVPLAL DAPW +KIIVL Sbjct: 1 MPLRFDTPLPIDAVLDALSGTLERSNTAVLVAPPGAGKTTRVPLALRDAPWVGDRKIIVL 60 Query: 61 EPRRIAARASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPEL 120 EPRRIAARASAERMAK+LGERAG+TVGYRVRFGSKVSRATRIEVVTEGIF+RQILDDPEL Sbjct: 61 EPRRIAARASAERMAKSLGERAGDTVGYRVRFGSKVSRATRIEVVTEGIFTRQILDDPEL 120 Query: 121 NGVAAVLFDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVV 180 G+AAVLFDEFHERSLDADLGLALARDAQ GLREDLRILVMSATLDGARV +LLGDAPVV Sbjct: 121 TGIAAVLFDEFHERSLDADLGLALARDAQQGLREDLRILVMSATLDGARVARLLGDAPVV 180 Query: 181 ESEGRAFPVETRYVGRKVDAPLERQMAETIAAALXRRRDPPHPNFFGRARARRRG----- 235 ESEGRAFPVETRYVGRK DAP+ERQMAETIA+AL G A RR Sbjct: 181 ESEGRAFPVETRYVGRKPDAPVERQMAETIASALRADAGSVLAFLPGAAEIRRTQTMLAE 240 Query: 236 RDHR-------------------------XGTRKVVLATSIAETSLTIEGVRIVVDAGLS 270 R H G RKVVLATSIAETSLTIEGVRIVVD S Sbjct: 241 RVHDASVEIVPLFGALDAAVQDRAISPAPKGGRKVVLATSIAETSLTIEGVRIVVD---S 297 Query: 271 GLARVPRYEPDIALTRLETVRASRAA 296 GLARVPRYEPDI LTRLETVRASRAA Sbjct: 298 GLARVPRYEPDIGLTRLETVRASRAA 323 >ref|YP_534695.1| ATP-dependent helicase HrpB [Rhodopseudomonas palustris BisB18] gb|ABD90376.1| ATP-dependent helicase HrpB [Rhodopseudomonas palustris BisB18] Length = 877 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 240/324 (74%), Positives = 253/324 (78%), Gaps = 37/324 (11%) Query: 5 FDSPLPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVLEPRR 64 FD+PLPIDAVLD L L +N AVLVAPPGAGKTTRVPLALLDAPW KKII+LEPRR Sbjct: 13 FDTPLPIDAVLDRLGSALAANNVAVLVAPPGAGKTTRVPLALLDAPWLGAKKIIMLEPRR 72 Query: 65 IAARASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPELNGVA 124 IAARASAERMAKTLGER G+TVGYRVRFGSKVSRATRIEVVTEGIFSR ILDDPELNG+A Sbjct: 73 IAARASAERMAKTLGERVGDTVGYRVRFGSKVSRATRIEVVTEGIFSRMILDDPELNGIA 132 Query: 125 AVLFDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVVESEG 184 A+LFDEFHERSLDADLGLALARDAQ GLREDLRILVMSAT+DGARVGKLLGDAPV+ES G Sbjct: 133 AILFDEFHERSLDADLGLALARDAQVGLREDLRILVMSATIDGARVGKLLGDAPVIESLG 192 Query: 185 RAFPVETRYVGRKVDAPLERQMAETIAAALXRRRDPPHPNFF--GRARARRRGRDHR--- 239 RA+PVETRY+GRK DAPLERQMAE IA+AL R +P F G A RR R Sbjct: 193 RAYPVETRYLGRKPDAPLERQMAEAIASAL--RENPGSVLAFLPGAAEIRRTETMLRERV 250 Query: 240 ---------------------------XGTRKVVLATSIAETSLTIEGVRIVVDAGLSGL 272 G RKVVLATSIAETSLTIEGVRIVVD G+ Sbjct: 251 VDASIEIVPLFGALDASVQDRAIQPAPKGCRKVVLATSIAETSLTIEGVRIVVD---CGM 307 Query: 273 ARVPRYEPDIALTRLETVRASRAA 296 ARVPRYEPDI LTRLETVRASRAA Sbjct: 308 ARVPRYEPDIGLTRLETVRASRAA 331 >ref|NP_945888.1| ATP-dependent helicase HrpB [Rhodopseudomonas palustris CGA009] emb|CAE25979.1| putative ATP-dependent helicase [Rhodopseudomonas palustris CGA009] Length = 825 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 240/326 (73%), Positives = 254/326 (77%), Gaps = 33/326 (10%) Query: 1 LPRQFDSPLPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVL 60 + R FD+PLPID LDEL LE N AVLVAPPGAGKTTRVPLALLDAPW R +KIIVL Sbjct: 1 MTRTFDTPLPIDDALDELTAALEASNTAVLVAPPGAGKTTRVPLALLDAPWLRNQKIIVL 60 Query: 61 EPRRIAARASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPEL 120 EPRRIAARASAERMAKTL E+AGE +GYRVRFGSKVSRATRIEVVTEGIF+RQILDDPEL Sbjct: 61 EPRRIAARASAERMAKTLSEKAGERIGYRVRFGSKVSRATRIEVVTEGIFTRQILDDPEL 120 Query: 121 NGVAAVLFDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVV 180 NGVAAVLFDEFHERSLDADLGLALARDAQ GLREDLRILVMSAT+DGARV +LLGDAPVV Sbjct: 121 NGVAAVLFDEFHERSLDADLGLALARDAQQGLREDLRILVMSATIDGARVARLLGDAPVV 180 Query: 181 ESEGRAFPVETRYVGRKVDAPLERQMAETIAAAL-------------------------X 215 ES GRAFPVETRY+GR+ DAPLERQMAE IA AL Sbjct: 181 ESLGRAFPVETRYLGRRSDAPLERQMAEAIAQALRAETGSVLAFLPGAAEIRRTETMLRE 240 Query: 216 RRRDPPHP--NFFGRARARRRGRDHR---XGTRKVVLATSIAETSLTIEGVRIVVDAGLS 270 R +DP FG A + R + G RKVVLATSIAETSLTIEGVRIVVD GLS Sbjct: 241 RVQDPAVEIVPLFGALDAAVQDRAIQPAPKGQRKVVLATSIAETSLTIEGVRIVVDCGLS 300 Query: 271 GLARVPRYEPDIALTRLETVRASRAA 296 RVPRYEPD+ LTRLETVRASRAA Sbjct: 301 ---RVPRYEPDLGLTRLETVRASRAA 323