BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0058.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236882.1| RNA polymerase sigma factor [Bradyrhizobium ... 346 1e-93 ref|NP_950126.1| RNA polymerase sigma factor [Rhodopseudomonas p... 344 5e-93 ref|YP_578869.1| RNA polymerase sigma factor [Nitrobacter hambur... 343 1e-92 ref|YP_004111255.1| ECF subfamily RNA polymerase sigma-24 subuni... 342 2e-92 ref|YP_001208644.1| RNA polymerase sigma factor [Bradyrhizobium ... 340 6e-92 >ref|YP_001236882.1| RNA polymerase sigma factor [Bradyrhizobium sp. BTAi1] gb|ABQ32976.1| RNA polymerase sigma factor (sigma-70 factor family, ECF subfamily) [Bradyrhizobium sp. BTAi1] Length = 203 Score = 346 bits (887), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 168/203 (82%), Positives = 186/203 (91%) Query: 1 MPNVIAINAAATKHIDAARATSDETLLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDT 60 M NV+AIN+AA++ I AA+AT+D+ LL IA DRT+MHTLYARHNVRVYRF+LR+VRDT Sbjct: 1 MQNVVAINSAASQGIIAAQATTDDMLLESIADGDRTAMHTLYARHNVRVYRFILRIVRDT 60 Query: 61 TMAEDLVSQVFLDVWRTAAQFEGRSQVSTWLLSIARFKALTALRQRKHEDIDQDDVLEIA 120 T+AEDLVSQVFLDVWRTA QFEGRSQVSTWLLSIARFKALTALRQR+ EDIDQD+V EIA Sbjct: 61 TIAEDLVSQVFLDVWRTAKQFEGRSQVSTWLLSIARFKALTALRQRRFEDIDQDEVREIA 120 Query: 121 DGADTPETSLDRATTSEILRACVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKT 180 D ADTPETSL+RATTS ILRACVAKLSPAHREII L+YYHEKSVEE G+IIGIPQSTVKT Sbjct: 121 DDADTPETSLERATTSAILRACVAKLSPAHREIITLIYYHEKSVEEVGQIIGIPQSTVKT 180 Query: 181 RMFYARKQLADLLRGAGVDSVAA 203 RMFYARK LA+LLRGAGV S+AA Sbjct: 181 RMFYARKHLAELLRGAGVHSIAA 203 >ref|NP_950126.1| RNA polymerase sigma factor [Rhodopseudomonas palustris CGA009] ref|YP_001994240.1| RNA polymerase sigma factor [Rhodopseudomonas palustris TIE-1] emb|CAE30232.1| RNA polymerase ECF-type sigma factor [Rhodopseudomonas palustris CGA009] gb|ACF03765.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhodopseudomonas palustris TIE-1] Length = 203 Score = 344 bits (882), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 167/203 (82%), Positives = 183/203 (90%) Query: 1 MPNVIAINAAATKHIDAARATSDETLLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDT 60 M NVIA+N A I AARATSDE LLA IA DRT+MHTLYARHNVRVYRF+LRMVRD Sbjct: 1 MQNVIALNDAGRLGILAARATSDEMLLASIANGDRTAMHTLYARHNVRVYRFILRMVRDA 60 Query: 61 TMAEDLVSQVFLDVWRTAAQFEGRSQVSTWLLSIARFKALTALRQRKHEDIDQDDVLEIA 120 AEDLVSQVFLDVWRTA QFEGR+QVSTWLLSIARFKALTALRQR+HEDIDQDDVLEIA Sbjct: 61 ATAEDLVSQVFLDVWRTARQFEGRAQVSTWLLSIARFKALTALRQRQHEDIDQDDVLEIA 120 Query: 121 DGADTPETSLDRATTSEILRACVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKT 180 DG+D+PET+LDR+ TS+ILRAC+AKLSPAHREIINLVYYHEKSVEE G I+GIPQSTVKT Sbjct: 121 DGSDSPETALDRSRTSDILRACIAKLSPAHREIINLVYYHEKSVEEVGRIVGIPQSTVKT 180 Query: 181 RMFYARKQLADLLRGAGVDSVAA 203 RMFYARKQLA+LL+ GV+S+AA Sbjct: 181 RMFYARKQLAELLKRHGVESLAA 203 >ref|YP_578869.1| RNA polymerase sigma factor [Nitrobacter hamburgensis X14] gb|ABE64409.1| RNA polymerase, sigma subunit, ECF family [Nitrobacter hamburgensis X14] Length = 207 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 166/203 (81%), Positives = 185/203 (91%) Query: 1 MPNVIAINAAATKHIDAARATSDETLLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDT 60 M NV+AINAAA + I AA+AT+DE LL RIA DRT+MHTLY RHNVRVYRFVLR +RD Sbjct: 5 MQNVVAINAAARQGIIAAQATTDEMLLERIADGDRTAMHTLYLRHNVRVYRFVLRSLRDA 64 Query: 61 TMAEDLVSQVFLDVWRTAAQFEGRSQVSTWLLSIARFKALTALRQRKHEDIDQDDVLEIA 120 T AED+VSQVFLDVWRTA QFEGRS+VSTWLLSIARFKALTALRQR+HEDIDQ++V EIA Sbjct: 65 TAAEDIVSQVFLDVWRTAGQFEGRSRVSTWLLSIARFKALTALRQRRHEDIDQENVREIA 124 Query: 121 DGADTPETSLDRATTSEILRACVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKT 180 DGADTPETSLDR+ S ILRAC+AKLSPAHREII+LVYYHEK+VEEAGEIIGIPQSTVKT Sbjct: 125 DGADTPETSLDRSNVSAILRACIAKLSPAHREIIHLVYYHEKTVEEAGEIIGIPQSTVKT 184 Query: 181 RMFYARKQLADLLRGAGVDSVAA 203 RMFYARKQLA+LL+GAGV ++AA Sbjct: 185 RMFYARKQLAELLKGAGVATLAA 207 >ref|YP_004111255.1| ECF subfamily RNA polymerase sigma-24 subunit [Rhodopseudomonas palustris DX-1] gb|ADU46522.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhodopseudomonas palustris DX-1] Length = 203 Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 166/203 (81%), Positives = 182/203 (89%) Query: 1 MPNVIAINAAATKHIDAARATSDETLLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDT 60 M NVIA+N A I AARATSDE LLA IA DRT+MHTLYARHNVRVYRF+LRMVRD Sbjct: 1 MQNVIALNDAGRLGILAARATSDEMLLASIAGGDRTAMHTLYARHNVRVYRFILRMVRDA 60 Query: 61 TMAEDLVSQVFLDVWRTAAQFEGRSQVSTWLLSIARFKALTALRQRKHEDIDQDDVLEIA 120 AEDLVSQVFLDVWRTA QFEGR+QVSTWLLSIARFKALTALRQR+HEDIDQDDVLEIA Sbjct: 61 ATAEDLVSQVFLDVWRTARQFEGRAQVSTWLLSIARFKALTALRQRQHEDIDQDDVLEIA 120 Query: 121 DGADTPETSLDRATTSEILRACVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKT 180 DG+D+PET+LDR+ T +ILRAC+AKLSPAHREIINLVYYHEKSVEE G I+GIPQSTVKT Sbjct: 121 DGSDSPETALDRSRTGDILRACIAKLSPAHREIINLVYYHEKSVEEVGRIVGIPQSTVKT 180 Query: 181 RMFYARKQLADLLRGAGVDSVAA 203 RMFYARKQLA+LL+ GV+S+AA Sbjct: 181 RMFYARKQLAELLKRHGVESLAA 203 >ref|YP_001208644.1| RNA polymerase sigma factor [Bradyrhizobium sp. ORS 278] emb|CAL80429.1| RNA polymerase sigma factor (sigma-70 factor family, ECF subfamily) [Bradyrhizobium sp. ORS 278] Length = 203 Score = 340 bits (873), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 166/203 (81%), Positives = 185/203 (91%) Query: 1 MPNVIAINAAATKHIDAARATSDETLLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDT 60 M NV+AIN+AA++ I AA+AT+D+ LL IA DRT+MHTLYARHNVRVYRF+LR+VRDT Sbjct: 1 MQNVVAINSAASQGIIAAQATTDDMLLESIADGDRTAMHTLYARHNVRVYRFILRIVRDT 60 Query: 61 TMAEDLVSQVFLDVWRTAAQFEGRSQVSTWLLSIARFKALTALRQRKHEDIDQDDVLEIA 120 T+AEDLVSQVFLDVWRTA QFEGRSQVSTWLLSIARFKALTALRQR+ EDIDQD+V EIA Sbjct: 61 TVAEDLVSQVFLDVWRTAKQFEGRSQVSTWLLSIARFKALTALRQRRFEDIDQDEVREIA 120 Query: 121 DGADTPETSLDRATTSEILRACVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKT 180 D +DTPETSL+RATTS ILRACVAKLSPAHREII L+YYHEKSVEE G+IIGIPQSTVKT Sbjct: 121 DDSDTPETSLERATTSAILRACVAKLSPAHREIITLIYYHEKSVEEVGQIIGIPQSTVKT 180 Query: 181 RMFYARKQLADLLRGAGVDSVAA 203 RMFYARK LA+LLR AGV S+AA Sbjct: 181 RMFYARKHLAELLRCAGVHSLAA 203