BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0055.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_529990.1| cytochrome bd ubiquinol oxidase subunit I [Rhod... 546 e-153 ref|YP_779478.1| cytochrome bd ubiquinol oxidase subunit I [Rhod... 529 e-148 ref|ZP_08627645.1| putative Cytochrome bd2, subunit I [Bradyrhiz... 522 e-146 ref|YP_488264.1| cytochrome bd ubiquinol oxidase, subunit I [Rho... 519 e-145 ref|YP_001236881.1| cytochrome bd ubiquinol oxidase subunit I [B... 519 e-145 >ref|YP_529990.1| cytochrome bd ubiquinol oxidase subunit I [Rhodopseudomonas palustris BisB18] gb|ABD85671.1| cytochrome bd ubiquinol oxidase, subunit I [Rhodopseudomonas palustris BisB18] Length = 469 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 263/300 (87%), Positives = 286/300 (95%) Query: 1 MFEGWDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLK 60 MFE +DAVVLARAQFAFTMSFHI+FPAFSIGLASY AVLEALWLATKREVYINLFNYWLK Sbjct: 1 MFENFDAVVLARAQFAFTMSFHIIFPAFSIGLASYLAVLEALWLATKREVYINLFNYWLK 60 Query: 61 IFAVAFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFG 120 IFA+AFGMGVVSGIVMSYQFGTNWS F+DKTGPV+GP+MAYEVLTAFFLEAGFLGVMLFG Sbjct: 61 IFAIAFGMGVVSGIVMSYQFGTNWSVFSDKTGPVLGPLMAYEVLTAFFLEAGFLGVMLFG 120 Query: 121 LERVGPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNP 180 LERVG +LHF+ATLMVAIGTLISAFWILSANSWMQTP G+A+NADGQFVA DWLK+IFNP Sbjct: 121 LERVGHKLHFIATLMVAIGTLISAFWILSANSWMQTPAGYAINADGQFVATDWLKLIFNP 180 Query: 181 SFPYRLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAG 240 SFPYRLVHMVLAAYLTT+LVVGAVGA+HL+RD H +G RVMFSMAMWMAT+VAP+QI+AG Sbjct: 181 SFPYRLVHMVLAAYLTTALVVGAVGAFHLMRDSHKSGPRVMFSMAMWMATIVAPLQIVAG 240 Query: 241 DQHGLNTLEHQPAKVMAMEGHYQSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 DQHG+NTLEHQPAKVMAMEGHYQSH DGAPLILFG PDQ A V+YA+++PKLSSLILKH Sbjct: 241 DQHGINTLEHQPAKVMAMEGHYQSHPDGAPLILFGLPDQDAAVVRYALQIPKLSSLILKH 300 >ref|YP_779478.1| cytochrome bd ubiquinol oxidase subunit I [Rhodopseudomonas palustris BisA53] gb|ABJ04498.1| cytochrome bd ubiquinol oxidase, subunit I [Rhodopseudomonas palustris BisA53] Length = 468 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 258/300 (86%), Positives = 279/300 (93%) Query: 1 MFEGWDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLK 60 M EG+DAVVLARAQFAFTMSFHI+FPAFSIGLASY AVLEALWLAT REVYINLFNYWLK Sbjct: 1 MGEGFDAVVLARAQFAFTMSFHIIFPAFSIGLASYLAVLEALWLATGREVYINLFNYWLK 60 Query: 61 IFAVAFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFG 120 IFA+AFGMGVVSGIVMSYQFGTNWS F+DKTGPV+GP+MAYEVLTAFFLEAGFLGVMLFG Sbjct: 61 IFAIAFGMGVVSGIVMSYQFGTNWSVFSDKTGPVLGPLMAYEVLTAFFLEAGFLGVMLFG 120 Query: 121 LERVGPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNP 180 L+RVGP+LHFVATLMVAIGTLISAFWILSANSWMQTP GHA N GQF+A DW +IFNP Sbjct: 121 LQRVGPKLHFVATLMVAIGTLISAFWILSANSWMQTPAGHATNEAGQFIAVDWWALIFNP 180 Query: 181 SFPYRLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAG 240 SFPYRL+HMVLAAYLTT+LVVGAVGA+HL+RDQH G RVMFSMAMWMATLVAP+QI AG Sbjct: 181 SFPYRLLHMVLAAYLTTALVVGAVGAFHLMRDQHKTGPRVMFSMAMWMATLVAPLQIFAG 240 Query: 241 DQHGLNTLEHQPAKVMAMEGHYQSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 D HG+NTLEHQPAKVMAMEGH+QSH DGAPLILFG PDQ A V+YA+++PKLSSLILKH Sbjct: 241 DLHGINTLEHQPAKVMAMEGHFQSHPDGAPLILFGLPDQDAAVVRYALQIPKLSSLILKH 300 >ref|ZP_08627645.1| putative Cytochrome bd2, subunit I [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09549.1| putative Cytochrome bd2, subunit I [Bradyrhizobiaceae bacterium SG-6C] Length = 471 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 255/300 (85%), Positives = 273/300 (91%) Query: 1 MFEGWDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLK 60 MFEG+DA+ LAR QFAFT+SFHIVFPAFSIGLASY AVLEALWL T REV+INLFNYWLK Sbjct: 1 MFEGFDAITLARMQFAFTVSFHIVFPAFSIGLASYLAVLEALWLKTGREVFINLFNYWLK 60 Query: 61 IFAVAFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFG 120 IFAVAFGMGVVSGIVMSYQFGTNWS F+DK GP+IGP+MAYEVLTAFFLEAGFLGVMLFG Sbjct: 61 IFAVAFGMGVVSGIVMSYQFGTNWSVFSDKAGPIIGPLMAYEVLTAFFLEAGFLGVMLFG 120 Query: 121 LERVGPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNP 180 L+RVGPRLHF ATLMVA+GTL SAFWILSANSWMQTP G A+N+ GQFVAADW KVIFNP Sbjct: 121 LKRVGPRLHFFATLMVAVGTLASAFWILSANSWMQTPAGFAMNSQGQFVAADWWKVIFNP 180 Query: 181 SFPYRLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAG 240 SFPYRLVHMVLAAYLTT+ VVGAVGA+HLL++ L GARVMFSMAMWMA LVAPIQI AG Sbjct: 181 SFPYRLVHMVLAAYLTTAFVVGAVGAYHLLKNTQLEGARVMFSMAMWMAALVAPIQIFAG 240 Query: 241 DQHGLNTLEHQPAKVMAMEGHYQSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 DQHGLNTLEHQP KVMAMEGH+QSH DGAPLILFG PDQA V+Y IE+PK SSLILKH Sbjct: 241 DQHGLNTLEHQPVKVMAMEGHFQSHPDGAPLILFGLPDQAAGTVRYPIEIPKASSLILKH 300 >ref|YP_488264.1| cytochrome bd ubiquinol oxidase, subunit I [Rhodopseudomonas palustris HaA2] gb|ABD09353.1| Cytochrome bd ubiquinol oxidase, subunit I [Rhodopseudomonas palustris HaA2] Length = 468 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 254/300 (84%), Positives = 276/300 (92%) Query: 1 MFEGWDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLK 60 MFE D VVLARAQFAFT+SFHI+FPAFSIGLAS+ AVLEALWL T REV+INLFNYWLK Sbjct: 1 MFESLDPVVLARAQFAFTVSFHIIFPAFSIGLASFLAVLEALWLWTGREVFINLFNYWLK 60 Query: 61 IFAVAFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFG 120 IFA+AFGMGVVSGIVMSYQFGTNWS F+DKTGPV+GP+MAYEVLTAFFLEAGFLGVMLFG Sbjct: 61 IFAIAFGMGVVSGIVMSYQFGTNWSVFSDKTGPVLGPLMAYEVLTAFFLEAGFLGVMLFG 120 Query: 121 LERVGPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNP 180 L+RVGP+LHF+ATLMVAIGTL+SAFWILSANSWM TP G+AVNADGQFVAADW K+IFNP Sbjct: 121 LKRVGPKLHFMATLMVAIGTLMSAFWILSANSWMHTPAGYAVNADGQFVAADWFKLIFNP 180 Query: 181 SFPYRLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAG 240 SFPYRLVHMVLAAYLTTSLVVGAVGA+HLL++ GAR+MFSMAMWM +VAPIQI AG Sbjct: 181 SFPYRLVHMVLAAYLTTSLVVGAVGAYHLLKNSRQPGARMMFSMAMWMLMIVAPIQIFAG 240 Query: 241 DQHGLNTLEHQPAKVMAMEGHYQSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 D HGLNTLEHQPAKVMAMEGHYQSH DGAP ILFG PDQ A V+YA+E+PKLSSLILKH Sbjct: 241 DLHGLNTLEHQPAKVMAMEGHYQSHPDGAPFILFGLPDQDAAVVRYALEIPKLSSLILKH 300 >ref|YP_001236881.1| cytochrome bd ubiquinol oxidase subunit I [Bradyrhizobium sp. BTAi1] gb|ABQ32975.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Bradyrhizobium sp. BTAi1] Length = 470 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 249/297 (83%), Positives = 275/297 (92%) Query: 4 GWDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLKIFA 63 G DAV LARAQFAFT++FHI+FPAFSIGLASY AVLEALWL T R+VY+N+FNYWLKIFA Sbjct: 5 GLDAVELARAQFAFTVTFHIIFPAFSIGLASYLAVLEALWLWTGRDVYLNVFNYWLKIFA 64 Query: 64 VAFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFGLER 123 +AF MGVVSGIVMSYQFGTNWS ++DK GPVIGP+MAYEVLTAFFLEAGFLGVMLFGL+R Sbjct: 65 IAFAMGVVSGIVMSYQFGTNWSVYSDKVGPVIGPLMAYEVLTAFFLEAGFLGVMLFGLKR 124 Query: 124 VGPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNPSFP 183 VGP+LHF+ATLMVA+GTLISAFWILSANSWMQTP G+AVNADGQFV+ DWLKVIFNPSFP Sbjct: 125 VGPKLHFLATLMVAVGTLISAFWILSANSWMQTPAGYAVNADGQFVSVDWLKVIFNPSFP 184 Query: 184 YRLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAGDQH 243 YRLVHMVLAAYLTTSLVVGAVGAWHLLR+ HL G RVMFSMAMWMA LVAP+QIL GDQH Sbjct: 185 YRLVHMVLAAYLTTSLVVGAVGAWHLLRNPHLPGPRVMFSMAMWMAALVAPLQILVGDQH 244 Query: 244 GLNTLEHQPAKVMAMEGHYQSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 GLNTLEHQP K+MAMEGH++SH DGAPL LFGWPDQA+ ++K+AI +PK SLILKH Sbjct: 245 GLNTLEHQPVKIMAMEGHFESHKDGAPLYLFGWPDQAKGELKWAIGIPKFGSLILKH 301