BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0054.p (466 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_529989.1| cytochrome d ubiquinol oxidase subunit II [Rhod... 569 e-160 ref|YP_571497.1| cytochrome d ubiquinol oxidase subunit II [Rhod... 550 e-154 ref|YP_004111257.1| cytochrome d ubiquinol oxidase subunit II [R... 542 e-152 ref|YP_488265.1| cytochrome d ubiquinol oxidase, subunit II [Rho... 537 e-150 ref|ZP_08627646.1| putative Cytochrome bd2, subunit II [Bradyrhi... 531 e-148 >ref|YP_529989.1| cytochrome d ubiquinol oxidase subunit II [Rhodopseudomonas palustris BisB18] gb|ABD85670.1| cytochrome d ubiquinol oxidase, subunit II [Rhodopseudomonas palustris BisB18] Length = 338 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 277/332 (83%), Positives = 309/332 (93%) Query: 135 IDLATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFPQKADRDVIMNTVAPVWDGNETWLV 194 +DLAT+WAFIIAFAVFVYVVMDGFDLGLG+LFPLFP+KADRDV+MN+VAPVWDGNETWLV Sbjct: 7 VDLATVWAFIIAFAVFVYVVMDGFDLGLGMLFPLFPKKADRDVMMNSVAPVWDGNETWLV 66 Query: 195 LGGGGMMAAFPLAYAVLMPALYTPMIAMLLGLVFRGVAFEFRWRTQKARNKWDLAFAGGS 254 LGGGG+ AAFPLAYAVLMPALYTPMI MLLGLVFRGVAFEFRWRTQ+ RN+WD+AFAGGS Sbjct: 67 LGGGGLFAAFPLAYAVLMPALYTPMIIMLLGLVFRGVAFEFRWRTQRERNRWDIAFAGGS 126 Query: 255 LLATLAQGIALGAILQGIHVEGRQYAGGWWDWLTPFSVLTGVALVIGYALLGATWLVMKT 314 LLAT+AQG+ALGAILQG+ VEGR YAGGWWDWLTPFS+LTG+ALV GY+LLGATWLVMKT Sbjct: 127 LLATMAQGVALGAILQGVQVEGRAYAGGWWDWLTPFSILTGLALVTGYSLLGATWLVMKT 186 Query: 315 EGELRDRAYHLSWMLLVAMLCAIGAVSIATPFLSVQYTQRWFAWPNIILTAPVPIAVAAV 374 EGELRD AY LSW LL+AML AIGAVSIATPFL+ +Y QRWFAWPN+++TAPVPIAVA V Sbjct: 187 EGELRDEAYRLSWWLLMAMLIAIGAVSIATPFLNFEYAQRWFAWPNVLVTAPVPIAVAGV 246 Query: 375 TALLLRALSDKNDHQPFFLTLALFALSYAGLGISMYPYIVPQSITIWQAAAPANSQIFML 434 T LLLRAL+ + D++PFFL+L LFAL+YAGLGISM+PYIVP+SITIWQAAAP NSQIFML Sbjct: 247 TVLLLRALAKRQDYRPFFLSLTLFALAYAGLGISMWPYIVPRSITIWQAAAPENSQIFML 306 Query: 435 VGVSILVPLILGYTAWAYWVFRGKVRPGHGYH 466 VGV+ILVP+IL YTAWAYWVFRGKV GYH Sbjct: 307 VGVAILVPIILIYTAWAYWVFRGKVNSESGYH 338 >ref|YP_571497.1| cytochrome d ubiquinol oxidase subunit II [Rhodopseudomonas palustris BisB5] gb|ABE41596.1| cytochrome d ubiquinol oxidase, subunit II [Rhodopseudomonas palustris BisB5] Length = 334 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 274/331 (82%), Positives = 301/331 (90%) Query: 136 DLATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFPQKADRDVIMNTVAPVWDGNETWLVL 195 DLATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFP K DRDVIMN+VAPVWDGNETWLVL Sbjct: 4 DLATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFPAKRDRDVIMNSVAPVWDGNETWLVL 63 Query: 196 GGGGMMAAFPLAYAVLMPALYTPMIAMLLGLVFRGVAFEFRWRTQKARNKWDLAFAGGSL 255 GGGG+ AAFPLAYAVLMPALYTP+IAMLLGLVFRGVAFEFRWRT + RN+WD+AF GGSL Sbjct: 64 GGGGLFAAFPLAYAVLMPALYTPIIAMLLGLVFRGVAFEFRWRTLRERNRWDIAFFGGSL 123 Query: 256 LATLAQGIALGAILQGIHVEGRQYAGGWWDWLTPFSVLTGVALVIGYALLGATWLVMKTE 315 +ATLAQG+ALGA+LQG+ VEGR YAGGWWDWLTPFSVLTGVALV+GYALLGATWLVMKT Sbjct: 124 IATLAQGVALGALLQGVQVEGRAYAGGWWDWLTPFSVLTGVALVVGYALLGATWLVMKTT 183 Query: 316 GELRDRAYHLSWMLLVAMLCAIGAVSIATPFLSVQYTQRWFAWPNIILTAPVPIAVAAVT 375 GELRD AY LS LL+AML AI AVS ATPFLS Y+QRWFAWP+++ TAPVPIAVA VT Sbjct: 184 GELRDEAYRLSRWLLIAMLIAIVAVSAATPFLSYDYSQRWFAWPHVLATAPVPIAVAGVT 243 Query: 376 ALLLRALSDKNDHQPFFLTLALFALSYAGLGISMYPYIVPQSITIWQAAAPANSQIFMLV 435 LLLRAL+ + D+QPF LTL LFALSYAGLGISM+PY+VP+SI+IWQAAAP +SQ+FMLV Sbjct: 244 FLLLRALTQRRDYQPFLLTLCLFALSYAGLGISMWPYVVPRSISIWQAAAPESSQLFMLV 303 Query: 436 GVSILVPLILGYTAWAYWVFRGKVRPGHGYH 466 GV+ILVP+IL YTAWAYWVFRGKV P GYH Sbjct: 304 GVAILVPIILIYTAWAYWVFRGKVDPESGYH 334 >ref|YP_004111257.1| cytochrome d ubiquinol oxidase subunit II [Rhodopseudomonas palustris DX-1] gb|ADU46524.1| cytochrome d ubiquinol oxidase, subunit II [Rhodopseudomonas palustris DX-1] Length = 334 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 270/331 (81%), Positives = 299/331 (90%) Query: 136 DLATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFPQKADRDVIMNTVAPVWDGNETWLVL 195 D+ATIWAFIIAFAVFVYVVMDGFDLGLGILFPLF K DRDV+MN+VAPVWDGNETWLVL Sbjct: 4 DVATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFRTKRDRDVVMNSVAPVWDGNETWLVL 63 Query: 196 GGGGMMAAFPLAYAVLMPALYTPMIAMLLGLVFRGVAFEFRWRTQKARNKWDLAFAGGSL 255 GGGG+ AAFPLAYAVLMPALYTP+IAMLLGLVFRGVAFEFRWRTQ+ RN+WDLAF GSL Sbjct: 64 GGGGLFAAFPLAYAVLMPALYTPIIAMLLGLVFRGVAFEFRWRTQRERNRWDLAFFLGSL 123 Query: 256 LATLAQGIALGAILQGIHVEGRQYAGGWWDWLTPFSVLTGVALVIGYALLGATWLVMKTE 315 +ATLAQGIALGA+LQG+ VEGR YAGGWWDWLTPFS+LTGVALVIGYA+LGATWLVMKT Sbjct: 124 IATLAQGIALGALLQGVAVEGRAYAGGWWDWLTPFSLLTGVALVIGYAMLGATWLVMKTT 183 Query: 316 GELRDRAYHLSWMLLVAMLCAIGAVSIATPFLSVQYTQRWFAWPNIILTAPVPIAVAAVT 375 G+LR+ AY LS LL AM+ AI AVS ATPFLS Y++RWFAWPN++ TA VP+AVA VT Sbjct: 184 GDLRETAYRLSRWLLAAMIVAIIAVSAATPFLSYDYSERWFAWPNVLATAQVPLAVAIVT 243 Query: 376 ALLLRALSDKNDHQPFFLTLALFALSYAGLGISMYPYIVPQSITIWQAAAPANSQIFMLV 435 ALLLRAL+ + D+QPF LTL LFALSYAGLGIS++PY+VP+SITIWQAAAP NSQIFMLV Sbjct: 244 ALLLRALAQRRDYQPFLLTLCLFALSYAGLGISLWPYVVPRSITIWQAAAPENSQIFMLV 303 Query: 436 GVSILVPLILGYTAWAYWVFRGKVRPGHGYH 466 GV+ILVP+IL YTAWAYWVFRGKV P GYH Sbjct: 304 GVAILVPIILAYTAWAYWVFRGKVDPESGYH 334 >ref|YP_488265.1| cytochrome d ubiquinol oxidase, subunit II [Rhodopseudomonas palustris HaA2] gb|ABD09354.1| cytochrome d ubiquinol oxidase, subunit II [Rhodopseudomonas palustris HaA2] Length = 334 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 269/331 (81%), Positives = 298/331 (90%) Query: 136 DLATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFPQKADRDVIMNTVAPVWDGNETWLVL 195 DLATIWA IIAFAVFVYVVMDGFDLGLGILFPLF K DRDV+MN+VAPVWDGNETWLVL Sbjct: 4 DLATIWALIIAFAVFVYVVMDGFDLGLGILFPLFRTKRDRDVVMNSVAPVWDGNETWLVL 63 Query: 196 GGGGMMAAFPLAYAVLMPALYTPMIAMLLGLVFRGVAFEFRWRTQKARNKWDLAFAGGSL 255 GGGG+ AAFPLAYAVLMPALYTP+IAMLLGLVFRGVAFEFRWR+ + RN+WDLAF GSL Sbjct: 64 GGGGLFAAFPLAYAVLMPALYTPIIAMLLGLVFRGVAFEFRWRSLRERNRWDLAFFLGSL 123 Query: 256 LATLAQGIALGAILQGIHVEGRQYAGGWWDWLTPFSVLTGVALVIGYALLGATWLVMKTE 315 +ATLAQGIALGAILQG+ VEGR YAGGWWDWLTPFSVLTG+ALV GYALLGATWLVMKT Sbjct: 124 IATLAQGIALGAILQGVAVEGRAYAGGWWDWLTPFSVLTGLALVTGYALLGATWLVMKTT 183 Query: 316 GELRDRAYHLSWMLLVAMLCAIGAVSIATPFLSVQYTQRWFAWPNIILTAPVPIAVAAVT 375 GELRD+AY LS LL+AML AI AVS ATPFLS Y++RWFAWPN++ TA VP+AVA VT Sbjct: 184 GELRDQAYRLSRWLLLAMLIAIVAVSAATPFLSYDYSERWFAWPNVLATAQVPLAVAIVT 243 Query: 376 ALLLRALSDKNDHQPFFLTLALFALSYAGLGISMYPYIVPQSITIWQAAAPANSQIFMLV 435 ALLLRAL+ + D+QPF LTL LFALSYAGLGIS++PY+VP+SIT+WQAAAP +SQ+FMLV Sbjct: 244 ALLLRALTQRRDYQPFLLTLCLFALSYAGLGISIWPYVVPRSITVWQAAAPESSQLFMLV 303 Query: 436 GVSILVPLILGYTAWAYWVFRGKVRPGHGYH 466 GV+ILVP+IL YTAWAYWVFRGKV P GYH Sbjct: 304 GVAILVPIILVYTAWAYWVFRGKVDPDSGYH 334 >ref|ZP_08627646.1| putative Cytochrome bd2, subunit II [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09550.1| putative Cytochrome bd2, subunit II [Bradyrhizobiaceae bacterium SG-6C] Length = 337 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/331 (76%), Positives = 295/331 (89%) Query: 136 DLATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFPQKADRDVIMNTVAPVWDGNETWLVL 195 D+AT+WAFIIAFAVF+Y+VMDGFDLGLG+LFP FP+K DRDV+MNTVAPVWDGNETWLVL Sbjct: 7 DIATLWAFIIAFAVFMYIVMDGFDLGLGMLFPFFPEKHDRDVMMNTVAPVWDGNETWLVL 66 Query: 196 GGGGMMAAFPLAYAVLMPALYTPMIAMLLGLVFRGVAFEFRWRTQKARNKWDLAFAGGSL 255 GGGG+MAAFPLA+A++MPA+YTP+IAML+GL+FRGVAFEFRWRT + RN WD+AFAGGSL Sbjct: 67 GGGGLMAAFPLAFAIVMPAIYTPIIAMLIGLIFRGVAFEFRWRTTRERNLWDIAFAGGSL 126 Query: 256 LATLAQGIALGAILQGIHVEGRQYAGGWWDWLTPFSVLTGVALVIGYALLGATWLVMKTE 315 +A LAQGIALGAILQGIHVEGR YAGGWWDWLTPFSVLTG A+V GY LLGATWLVMKT Sbjct: 127 IAALAQGIALGAILQGIHVEGRHYAGGWWDWLTPFSVLTGCAVVAGYGLLGATWLVMKTT 186 Query: 316 GELRDRAYHLSWMLLVAMLCAIGAVSIATPFLSVQYTQRWFAWPNIILTAPVPIAVAAVT 375 G+LR+ AY LSW LL+A L AI AVS+ATPFL Y +RWF WPNI+ TAP+PIAVAA+T Sbjct: 187 GDLREHAYRLSWWLLIATLAAIVAVSLATPFLQADYWRRWFEWPNILFTAPIPIAVAAIT 246 Query: 376 ALLLRALSDKNDHQPFFLTLALFALSYAGLGISMYPYIVPQSITIWQAAAPANSQIFMLV 435 LLL++L+DK D++PF L+L LFA++YAGLG+SM+PYIVPQS+TIWQAAAPANS FM+ Sbjct: 247 LLLLKSLADKRDYRPFVLSLVLFAITYAGLGVSMFPYIVPQSVTIWQAAAPANSLYFMIF 306 Query: 436 GVSILVPLILGYTAWAYWVFRGKVRPGHGYH 466 GV++LVP+IL YT WAYWVFRGKV GYH Sbjct: 307 GVAVLVPIILAYTGWAYWVFRGKVDASSGYH 337