BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0053.p         (42 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_529988.1| hypothetical protein RPC_0090 [Rhodopseudomonas...    53   2e-05
ref|YP_571498.1| hypothetical protein RPD_4380 [Rhodopseudomonas...    49   2e-04
ref|YP_779476.1| hypothetical protein RPE_0537 [Rhodopseudomonas...    47   9e-04
ref|YP_002287645.1| hypothetical protein OCAR_4637 [Oligotropha ...    46   0.002
ref|NP_950129.1| hypothetical protein RPA4795 [Rhodopseudomonas ...    45   0.004

>ref|YP_529988.1| hypothetical protein RPC_0090 [Rhodopseudomonas palustris BisB18]
 gb|ABD85669.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 44

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 27/37 (72%)

Query: 6  NQRPLGQRLLWFAALWLGGVGTVALISFALRLWIAPK 42
            RPL +RLLWF ALW  GVG V L+SF LRLWIAP 
Sbjct: 8  TPRPLTKRLLWFVALWAAGVGAVGLVSFILRLWIAPH 44


>ref|YP_571498.1| hypothetical protein RPD_4380 [Rhodopseudomonas palustris BisB5]
 gb|ABE41597.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 43

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 26/35 (74%)

Query: 7  QRPLGQRLLWFAALWLGGVGTVALISFALRLWIAP 41
            PL +RLLWF ALWL GVG V L+S  LRLWIAP
Sbjct: 8  SSPLSRRLLWFVALWLVGVGAVTLLSLVLRLWIAP 42


>ref|YP_779476.1| hypothetical protein RPE_0537 [Rhodopseudomonas palustris BisA53]
 gb|ABJ04496.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisA53]
          Length = 44

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 9  PLGQRLLWFAALWLGGVGTVALISFALRLWIAPK 42
          P G+RL+WF ALW  GVG VAL+S  LR WI P 
Sbjct: 11 PFGRRLMWFVALWAAGVGAVALVSLLLRFWIGPH 44


>ref|YP_002287645.1| hypothetical protein OCAR_4637 [Oligotropha carboxidovorans OM5]
 ref|YP_004634225.1| hypothetical protein OCA5_c33090 [Oligotropha carboxidovorans
          OM5]
 gb|ACI91780.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
 gb|AEI04354.1| hypothetical protein OCA4_c32570 [Oligotropha carboxidovorans
          OM4]
 gb|AEI07984.1| hypothetical protein OCA5_c33090 [Oligotropha carboxidovorans
          OM5]
          Length = 44

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 26/37 (70%)

Query: 6  NQRPLGQRLLWFAALWLGGVGTVALISFALRLWIAPK 42
           Q  L +RL WF ALW GGV T+ +IS+ LRLW+AP 
Sbjct: 7  EQPSLPRRLFWFIALWAGGVATIGIISYILRLWLAPH 43


>ref|NP_950129.1| hypothetical protein RPA4795 [Rhodopseudomonas palustris CGA009]
 ref|YP_001994243.1| hypothetical protein Rpal_5281 [Rhodopseudomonas palustris TIE-1]
 emb|CAE30235.1| conserved hypothetical protein [Rhodopseudomonas palustris
          CGA009]
 gb|ACF03768.1| hypothetical protein Rpal_5281 [Rhodopseudomonas palustris TIE-1]
          Length = 43

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query: 7  QRPLGQRLLWFAALWLGGVGTVALISFALRLWI 39
          + PL +RLLWF ALWL GVG V L+S  LRLWI
Sbjct: 8  RTPLPRRLLWFVALWLAGVGAVTLVSLLLRLWI 40