BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0051.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236878.1| general L-amino acid-binding periplasmic pro... 604 e-171 ref|YP_001208648.1| general L-amino acid-binding periplasmic pro... 602 e-170 ref|NP_767663.1| amino acid binding protein [Bradyrhizobium japo... 597 e-169 ref|NP_950131.1| ABC transporter amino acid binding protein [Rho... 585 e-165 ref|YP_001994245.1| family 3 extracellular solute-binding protei... 583 e-164 >ref|YP_001236878.1| general L-amino acid-binding periplasmic protein [Bradyrhizobium sp. BTAi1] gb|ABQ32972.1| amino acid ABC transporter substrate-binding protein, PAAT family [Bradyrhizobium sp. BTAi1] Length = 345 Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust. Identities = 294/345 (85%), Positives = 321/345 (93%) Query: 1 MRTFRGGLTIGLAVAVLVAAAAFTYERYDTRTLKRTVRRGDVLCGVNKGLPGFSIPDDKG 60 MR+FRGGL IGLAVAVLVAA A TYE YDTRTLKRTVRRG+VLCGVN GLPGFSIPDDKG Sbjct: 1 MRSFRGGLLIGLAVAVLVAALAVTYEMYDTRTLKRTVRRGEVLCGVNAGLPGFSIPDDKG 60 Query: 61 NWTGFDVDFCRAVASAIFDDPSKAKFVPLDASERFKELQNRKVDILSRNSTWSMSRETNY 120 NWTGFDVDFCRAVA+AIFDDP KAKFVPLDA+ERFKELQ+RKVDILSRN+TWSM+RE NY Sbjct: 61 NWTGFDVDFCRAVAAAIFDDPKKAKFVPLDANERFKELQSRKVDILSRNTTWSMAREQNY 120 Query: 121 DLYFPAVAYYDGQGFMLPRSRNIDSALDLNGSKVCVQANTTTQLNLADYFRANNMKYTEM 180 DLYFPAVAYYDGQGFM+PRSR +++ALDLNGSKVCVQ +TT LNLADYFRANNMKY E+ Sbjct: 121 DLYFPAVAYYDGQGFMVPRSRKLETALDLNGSKVCVQDSTTNALNLADYFRANNMKYEEI 180 Query: 181 KFDKLDDVVKAYNSGQCDTLTSDASQLYALRLNLAKPSDHTILADIISKEPLAPVVRLRD 240 KF KLDDV+KAY+SG+CDT T+D SQLYALRL L KP+DH IL D+ISKEPLAPVVR RD Sbjct: 181 KFLKLDDVLKAYDSGKCDTFTADVSQLYALRLVLTKPNDHDILPDMISKEPLAPVVRQRD 240 Query: 241 DDWMMIVKWTLYAMINAEELGITSKNIDEALKSKKPEVMRLVGTEGAYGEDLGLTKDWAV 300 DDWMMIVKWTLYAMINAEELG+TSKNIDEALKSKKP+VMRLVG EG YG+DLGL KDWA Sbjct: 241 DDWMMIVKWTLYAMINAEELGVTSKNIDEALKSKKPDVMRLVGNEGTYGQDLGLAKDWAA 300 Query: 301 RIIRHVGNYGEVYDRNVGADSKLKIPRGMNQLWNAGGVQYAPPIR 345 RIIRHVGNYGEVY+RN+G++SKLKIPRGMNQLWNAGG+QYAPPIR Sbjct: 301 RIIRHVGNYGEVYERNIGSESKLKIPRGMNQLWNAGGIQYAPPIR 345 >ref|YP_001208648.1| general L-amino acid-binding periplasmic protein [Bradyrhizobium sp. ORS 278] emb|CAL80433.1| General L-amino acid-binding periplasmic protein [Bradyrhizobium sp. ORS 278] Length = 345 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 293/345 (84%), Positives = 319/345 (92%) Query: 1 MRTFRGGLTIGLAVAVLVAAAAFTYERYDTRTLKRTVRRGDVLCGVNKGLPGFSIPDDKG 60 MRTFRGGL IGLAVAVLVAA A TYE YDTRTLKRTVRRG+VLCGVN GLPGFSIPDDKG Sbjct: 1 MRTFRGGLLIGLAVAVLVAALAVTYEMYDTRTLKRTVRRGEVLCGVNAGLPGFSIPDDKG 60 Query: 61 NWTGFDVDFCRAVASAIFDDPSKAKFVPLDASERFKELQNRKVDILSRNSTWSMSRETNY 120 NWTGFDVDFCRAVA+AIFDDP KA+FVPLDASERFKELQ+RKVDILSRN+TWSM+RE NY Sbjct: 61 NWTGFDVDFCRAVAAAIFDDPKKARFVPLDASERFKELQSRKVDILSRNTTWSMAREQNY 120 Query: 121 DLYFPAVAYYDGQGFMLPRSRNIDSALDLNGSKVCVQANTTTQLNLADYFRANNMKYTEM 180 DLYFPAVAYYDGQGFM+PR+R +++ALDLNGSKVCVQ +TT LNL DYFRANNMKY E+ Sbjct: 121 DLYFPAVAYYDGQGFMVPRARKLETALDLNGSKVCVQDSTTNALNLGDYFRANNMKYEEV 180 Query: 181 KFDKLDDVVKAYNSGQCDTLTSDASQLYALRLNLAKPSDHTILADIISKEPLAPVVRLRD 240 K KLDDV+KAY+SG+CDT T+D SQLYALRL L KP DH IL D+ISKEPLAPVVR RD Sbjct: 181 KLPKLDDVLKAYDSGKCDTFTADVSQLYALRLVLTKPGDHDILPDLISKEPLAPVVRQRD 240 Query: 241 DDWMMIVKWTLYAMINAEELGITSKNIDEALKSKKPEVMRLVGTEGAYGEDLGLTKDWAV 300 DDWMMIVKWTLYAMINAEELG+TSKNIDEALKSKKP+VMRLVG EG YG+DLGL+KDWA Sbjct: 241 DDWMMIVKWTLYAMINAEELGVTSKNIDEALKSKKPDVMRLVGNEGTYGQDLGLSKDWAA 300 Query: 301 RIIRHVGNYGEVYDRNVGADSKLKIPRGMNQLWNAGGVQYAPPIR 345 RIIRHVGNYGEVY+RNVG++SKLKIPRGMNQLWNAGG+QYAPPIR Sbjct: 301 RIIRHVGNYGEVYERNVGSESKLKIPRGMNQLWNAGGIQYAPPIR 345 >ref|NP_767663.1| amino acid binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46288.1| bll1023 [Bradyrhizobium japonicum USDA 110] Length = 345 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 291/345 (84%), Positives = 319/345 (92%) Query: 1 MRTFRGGLTIGLAVAVLVAAAAFTYERYDTRTLKRTVRRGDVLCGVNKGLPGFSIPDDKG 60 MRTFRGGL IGLAVAVLV A YE YDTRTLKRTVRRG+VLCGVNKGLPGFSIPDDKG Sbjct: 1 MRTFRGGLLIGLAVAVLVGVLAVIYEFYDTRTLKRTVRRGEVLCGVNKGLPGFSIPDDKG 60 Query: 61 NWTGFDVDFCRAVASAIFDDPSKAKFVPLDASERFKELQNRKVDILSRNSTWSMSRETNY 120 NWTGFDVDFCRAVA+AIF+DP+KAKFV LDASERFKELQ+RKVDILSRNSTWSM+RE +Y Sbjct: 61 NWTGFDVDFCRAVAAAIFNDPAKAKFVALDASERFKELQSRKVDILSRNSTWSMARELDY 120 Query: 121 DLYFPAVAYYDGQGFMLPRSRNIDSALDLNGSKVCVQANTTTQLNLADYFRANNMKYTEM 180 DLYFPAVAYYDG GFMLPRSRN +++LDL GSKVCVQ TTT LN++DYFRANNMKY E+ Sbjct: 121 DLYFPAVAYYDGAGFMLPRSRNKETSLDLTGSKVCVQTGTTTALNVSDYFRANNMKYEEV 180 Query: 181 KFDKLDDVVKAYNSGQCDTLTSDASQLYALRLNLAKPSDHTILADIISKEPLAPVVRLRD 240 KFDKLDDVVKAY++G+CDTL++D SQLYALRLNL+KP DH IL D+ISKEPLAPVVR RD Sbjct: 181 KFDKLDDVVKAYDTGKCDTLSADVSQLYALRLNLSKPGDHMILPDMISKEPLAPVVRQRD 240 Query: 241 DDWMMIVKWTLYAMINAEELGITSKNIDEALKSKKPEVMRLVGTEGAYGEDLGLTKDWAV 300 DDWMMIVKWTLYAMINAEELG++S+NIDEALKSKKPEVMRLVGTEG YGE LGLTKDW V Sbjct: 241 DDWMMIVKWTLYAMINAEELGVSSENIDEALKSKKPEVMRLVGTEGNYGEQLGLTKDWVV 300 Query: 301 RIIRHVGNYGEVYDRNVGADSKLKIPRGMNQLWNAGGVQYAPPIR 345 RIIR+VGNYGE+Y+RN+G SKLKIPRGMNQLWNAGGVQYAPP+R Sbjct: 301 RIIRNVGNYGEMYERNIGEKSKLKIPRGMNQLWNAGGVQYAPPMR 345 >ref|NP_950131.1| ABC transporter amino acid binding protein [Rhodopseudomonas palustris CGA009] emb|CAE30237.1| ABC transporter, amino acid binding protein [Rhodopseudomonas palustris CGA009] Length = 344 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 284/344 (82%), Positives = 307/344 (89%), Gaps = 3/344 (0%) Query: 2 RTFRGGLTIGLAVAVLVAAAAFTYERYDTRTLKRTVRRGDVLCGVNKGLPGFSIPDDKGN 61 RTFR GL IGL VA +AAAA TYERYDT+TLKRT+RR VLCGVNKGLPGFS PDDKGN Sbjct: 4 RTFRTGLAIGLVVAAGIAAAAITYERYDTKTLKRTIRRDAVLCGVNKGLPGFSTPDDKGN 63 Query: 62 WTGFDVDFCRAVASAIFDDPSKAKFVPLDASERFKELQNRKVDILSRNSTWSMSRETNYD 121 WTGFDVDFCRAVA+AIFDDP+K +FVPLDA+ERFKELQ+RKVDILSRNSTWSMSRETNYD Sbjct: 64 WTGFDVDFCRAVAAAIFDDPTKVQFVPLDANERFKELQSRKVDILSRNSTWSMSRETNYD 123 Query: 122 LYFPAVAYYDGQGFMLPRSRNIDSALDLNGSKVCVQANTTTQLNLADYFRANNMKYTEMK 181 LYFPAVAYYDGQGFM+P SR IDSA++L+GSKVCVQ TTTQLNLADYFRANNMKY E+K Sbjct: 124 LYFPAVAYYDGQGFMVPASRKIDSAVELDGSKVCVQNGTTTQLNLADYFRANNMKYQEVK 183 Query: 182 FDKLDDVVKAYNSGQCDTLTSDASQLYALRLNLAKPSDHTILADIISKEPLAPVVRLRDD 241 +K DDVVKAY GQCDT T+D SQLYALR K DH IL D+ISKEPLAPVVR RDD Sbjct: 184 SEKFDDVVKAYKDGQCDTFTADVSQLYALRKTFEKSGDHIILPDVISKEPLAPVVRQRDD 243 Query: 242 DWMMIVKWTLYAMINAEELGITSKNIDEALKSKKPEVMRLVGTEGAYGEDLGLTKDWAVR 301 DWMMIVKWTLYAMINAEELGITS+NI EALKSKKP+VMRLVGTEGA+GEDLGL+KDWA R Sbjct: 244 DWMMIVKWTLYAMINAEELGITSQNIGEALKSKKPDVMRLVGTEGAFGEDLGLSKDWAAR 303 Query: 302 IIRHVGNYGEVYDRNVGADSKLKIPRGMNQLWNAGGVQYAPPIR 345 IIRHVGNYGEVYDRNVG KL IPRG+NQLW+ GG+QYAPPIR Sbjct: 304 IIRHVGNYGEVYDRNVG---KLGIPRGLNQLWSNGGIQYAPPIR 344 >ref|YP_001994245.1| family 3 extracellular solute-binding protein [Rhodopseudomonas palustris TIE-1] gb|ACF03770.1| extracellular solute-binding protein family 3 [Rhodopseudomonas palustris TIE-1] Length = 344 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 282/344 (81%), Positives = 306/344 (88%), Gaps = 3/344 (0%) Query: 2 RTFRGGLTIGLAVAVLVAAAAFTYERYDTRTLKRTVRRGDVLCGVNKGLPGFSIPDDKGN 61 RTFR GL IGL VA +AAAA TYERYDT+TLKRT+RR VLCGVNKGLPGFS PDDKGN Sbjct: 4 RTFRTGLAIGLVVAAGIAAAAITYERYDTKTLKRTIRRDAVLCGVNKGLPGFSTPDDKGN 63 Query: 62 WTGFDVDFCRAVASAIFDDPSKAKFVPLDASERFKELQNRKVDILSRNSTWSMSRETNYD 121 WTGFDVDFCRAVA+AIFDDP+K +FVPLDA+ERFKELQ+RKVDILSRNSTWSMSRETNYD Sbjct: 64 WTGFDVDFCRAVAAAIFDDPTKVQFVPLDANERFKELQSRKVDILSRNSTWSMSRETNYD 123 Query: 122 LYFPAVAYYDGQGFMLPRSRNIDSALDLNGSKVCVQANTTTQLNLADYFRANNMKYTEMK 181 LYFPAVAYYDGQGFM+P SR IDSA++L+GSKVCVQ TTTQLNLADYFR NNMKY E+K Sbjct: 124 LYFPAVAYYDGQGFMVPASRKIDSAVELDGSKVCVQNGTTTQLNLADYFRTNNMKYQEVK 183 Query: 182 FDKLDDVVKAYNSGQCDTLTSDASQLYALRLNLAKPSDHTILADIISKEPLAPVVRLRDD 241 +K DDVVKAY GQCDT T+D SQLYALR K DH IL D+ISKEPLAPVVR RDD Sbjct: 184 SEKFDDVVKAYKDGQCDTFTADVSQLYALRKTFEKSGDHIILPDVISKEPLAPVVRQRDD 243 Query: 242 DWMMIVKWTLYAMINAEELGITSKNIDEALKSKKPEVMRLVGTEGAYGEDLGLTKDWAVR 301 DWMMIVKWTLYAMINAEELGITS+NI EALKSKKP+VMRLVGTEGA+GEDLGL+KDWA R Sbjct: 244 DWMMIVKWTLYAMINAEELGITSQNIGEALKSKKPDVMRLVGTEGAFGEDLGLSKDWAAR 303 Query: 302 IIRHVGNYGEVYDRNVGADSKLKIPRGMNQLWNAGGVQYAPPIR 345 +IRHVGNYGEVYDRNVG KL IPRG+NQLW+ GG+QYAPPIR Sbjct: 304 VIRHVGNYGEVYDRNVG---KLGIPRGLNQLWSNGGIQYAPPIR 344