BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0041.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236871.1| hypothetical protein BBta_0698 [Bradyrhizobi... 321 6e-86 ref|NP_950136.1| hypothetical protein RPA4802 [Rhodopseudomonas ... 315 3e-84 ref|YP_001994251.1| hypothetical protein Rpal_5289 [Rhodopseudom... 313 2e-83 ref|YP_571506.1| hypothetical protein RPD_4388 [Rhodopseudomonas... 312 2e-83 ref|YP_578865.1| hypothetical protein Nham_3677 [Nitrobacter ham... 311 4e-83 >ref|YP_001236871.1| hypothetical protein BBta_0698 [Bradyrhizobium sp. BTAi1] gb|ABQ32965.1| hypothetical protein BBta_0698 [Bradyrhizobium sp. BTAi1] Length = 225 Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 159/223 (71%), Positives = 178/223 (79%) Query: 1 VAEFVVEFGKDGQPVEADGRLDAAAYHRNHQPIWTVLKDHLAGQSGDVLEAGSGTGQHVV 60 +AE+VVEFG+DG+PVE DGRLDAAA+HRNHQPIW VL L G+SGDV+EAGSGTGQH+V Sbjct: 1 MAEYVVEFGRDGRPVEPDGRLDAAAFHRNHQPIWAVLARLLTGRSGDVMEAGSGTGQHIV 60 Query: 61 YFAGQTPDITWWPSDLHAAHLRSIEAWRVHAGLANIRPPQPIDLSDPAWSPAPSDGKGPD 120 FA + PD+ WWPSDL+ +HL+SI AWR HAGLANIR Q IDL+DP W A GP Sbjct: 61 QFASERPDLVWWPSDLNESHLKSIAAWRKHAGLANIRDVQRIDLADPGWVAAFQAAGGPA 120 Query: 121 QLLAIFCANVIHIAPWRVAEGLFAGAARHLRADGRLILYGPFKRGGKHTALSNAVFDTSL 180 L AIFCANVIHIAPW VAEGLFAGA R L DG L+LYGPFKR GKHTA+SNAVFDTSL Sbjct: 121 SLSAIFCANVIHIAPWSVAEGLFAGAGRLLSPDGLLVLYGPFKRDGKHTAVSNAVFDTSL 180 Query: 181 RERDAEWGVRDIADLETLAESVGLKLAGTFEMPANNMILVFAR 223 RE + +WGVRDIAD+ LA GL L T EMPANNMILVFAR Sbjct: 181 REGNPQWGVRDIADVAALAARHGLALRETVEMPANNMILVFAR 223 >ref|NP_950136.1| hypothetical protein RPA4802 [Rhodopseudomonas palustris CGA009] emb|CAE30242.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 243 Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 156/223 (69%), Positives = 177/223 (79%) Query: 1 VAEFVVEFGKDGQPVEADGRLDAAAYHRNHQPIWTVLKDHLAGQSGDVLEAGSGTGQHVV 60 +AEFVVEFGKDG+ VE DGRLDAAA+HRN +PI VL LAG+ GDVLEAGSGTGQH+ Sbjct: 6 MAEFVVEFGKDGRRVEPDGRLDAAAFHRNDEPIRAVLARLLAGRQGDVLEAGSGTGQHIA 65 Query: 61 YFAGQTPDITWWPSDLHAAHLRSIEAWRVHAGLANIRPPQPIDLSDPAWSPAPSDGKGPD 120 A + PDI WWPSD++ HL+SI AWR HAGL N+R PQ IDL+DPAWS A +G P Sbjct: 66 ALAREHPDIAWWPSDVNDQHLKSIAAWRAHAGLPNLRSPQRIDLADPAWSIASVEGAAPG 125 Query: 121 QLLAIFCANVIHIAPWRVAEGLFAGAARHLRADGRLILYGPFKRGGKHTALSNAVFDTSL 180 LLAIFCANV+HIAPWRVAEGL AGA R LR DG L+LYGPFK+ GKHTALSNAVFDTSL Sbjct: 126 PLLAIFCANVVHIAPWRVAEGLLAGAGRLLRQDGMLVLYGPFKQDGKHTALSNAVFDTSL 185 Query: 181 RERDAEWGVRDIADLETLAESVGLKLAGTFEMPANNMILVFAR 223 R+ + EWGVRD+ADLE LA GL L+ EMPANN+ILVF R Sbjct: 186 RDANPEWGVRDVADLERLAAGAGLALSEIVEMPANNLILVFVR 228 >ref|YP_001994251.1| hypothetical protein Rpal_5289 [Rhodopseudomonas palustris TIE-1] gb|ACF03776.1| protein of unknown function DUF938 [Rhodopseudomonas palustris TIE-1] Length = 238 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 155/223 (69%), Positives = 177/223 (79%) Query: 1 VAEFVVEFGKDGQPVEADGRLDAAAYHRNHQPIWTVLKDHLAGQSGDVLEAGSGTGQHVV 60 +AEFVVEFGKDG+ VE DGRLDAAA+HRN +PI +L LAG+ GDVLEAGSGTGQH+ Sbjct: 1 MAEFVVEFGKDGRRVEPDGRLDAAAFHRNDEPIRAMLARLLAGRQGDVLEAGSGTGQHIA 60 Query: 61 YFAGQTPDITWWPSDLHAAHLRSIEAWRVHAGLANIRPPQPIDLSDPAWSPAPSDGKGPD 120 A + PDI WWPSD++ HL+SI AW HAGL N+R PQ IDL+DPAWS AP+D P Sbjct: 61 ALAREHPDIAWWPSDVNDLHLKSIAAWCAHAGLPNLRSPQRIDLADPAWSVAPADRAAPG 120 Query: 121 QLLAIFCANVIHIAPWRVAEGLFAGAARHLRADGRLILYGPFKRGGKHTALSNAVFDTSL 180 LLAIFCANV+HIAPWRVAEGL AGA R LR DG L+LYGPFK+ GKHTALSNAVFDTSL Sbjct: 121 PLLAIFCANVVHIAPWRVAEGLLAGAGRLLRQDGMLVLYGPFKQDGKHTALSNAVFDTSL 180 Query: 181 RERDAEWGVRDIADLETLAESVGLKLAGTFEMPANNMILVFAR 223 R+ + EWGVRD+ADLE LA GL L+ EMPANN+ILVF R Sbjct: 181 RDANPEWGVRDVADLERLAAGAGLALSEIVEMPANNLILVFVR 223 >ref|YP_571506.1| hypothetical protein RPD_4388 [Rhodopseudomonas palustris BisB5] gb|ABE41605.1| protein of unknown function DUF938 [Rhodopseudomonas palustris BisB5] Length = 227 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 151/224 (67%), Positives = 177/224 (79%) Query: 1 VAEFVVEFGKDGQPVEADGRLDAAAYHRNHQPIWTVLKDHLAGQSGDVLEAGSGTGQHVV 60 + E+VVEFGKDG+P+E DGRLDAAA+HRN Q I VL L G +GDVLEAGSGTGQHV+ Sbjct: 1 MTEYVVEFGKDGRPLEPDGRLDAAAFHRNQQAIRDVLGRLLRGTTGDVLEAGSGTGQHVI 60 Query: 61 YFAGQTPDITWWPSDLHAAHLRSIEAWRVHAGLANIRPPQPIDLSDPAWSPAPSDGKGPD 120 FA Q P+I WWPSDLH HL S+ AWR +AGL N+RPP +DLSDP W +DG+GP Sbjct: 61 AFARQHPEIVWWPSDLHPRHLLSMAAWRAYAGLGNVRPPLRVDLSDPVWCAEMTDGRGPG 120 Query: 121 QLLAIFCANVIHIAPWRVAEGLFAGAARHLRADGRLILYGPFKRGGKHTALSNAVFDTSL 180 L A+FCANV+HIAPW VA GLFAG+AR+LR DGRLILYGPFKR G+HTA SNAVFDTSL Sbjct: 121 PLAAVFCANVVHIAPWPVAGGLFAGSARYLRPDGRLILYGPFKRDGRHTADSNAVFDTSL 180 Query: 181 RERDAEWGVRDIADLETLAESVGLKLAGTFEMPANNMILVFARK 224 R +AEWGVRD+++LE LA +GL L T EMPANN+IL F+R Sbjct: 181 RSANAEWGVRDVSELEQLATGLGLVLRETVEMPANNLILCFSRS 224 >ref|YP_578865.1| hypothetical protein Nham_3677 [Nitrobacter hamburgensis X14] gb|ABE64405.1| protein of unknown function DUF938 [Nitrobacter hamburgensis X14] Length = 226 Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 151/223 (67%), Positives = 175/223 (78%) Query: 1 VAEFVVEFGKDGQPVEADGRLDAAAYHRNHQPIWTVLKDHLAGQSGDVLEAGSGTGQHVV 60 + ++ VEFGKDG+ E+D RLDAAA+HRNH IW VL+ L G++GDV+EAGSGTGQHVV Sbjct: 1 MIDYTVEFGKDGRHGESDDRLDAAAFHRNHAAIWAVLEKFLRGKTGDVVEAGSGTGQHVV 60 Query: 61 YFAGQTPDITWWPSDLHAAHLRSIEAWRVHAGLANIRPPQPIDLSDPAWSPAPSDGKGPD 120 +FA P +TWWPSDL+ HLRSI AW H LAN+RPP IDLS+P W SD GP Sbjct: 61 FFAQHAPGVTWWPSDLNDNHLRSIAAWIAHENLANVRPPLRIDLSNPQWRAEMSDSHGPG 120 Query: 121 QLLAIFCANVIHIAPWRVAEGLFAGAARHLRADGRLILYGPFKRGGKHTALSNAVFDTSL 180 LLAIFCANVIHIAPWRVAEGL AGAAR+LR DGRL LYGPFKRGGKHTALSNAVFDTSL Sbjct: 121 ALLAIFCANVIHIAPWRVAEGLIAGAARYLRPDGRLFLYGPFKRGGKHTALSNAVFDTSL 180 Query: 181 RERDAEWGVRDIADLETLAESVGLKLAGTFEMPANNMILVFAR 223 R+ + EWGVRD+ ++ LA+ GLKLA +MPANN+IL F R Sbjct: 181 RDNNPEWGVRDVDEMAVLAQHNGLKLAELIDMPANNLILTFER 223