BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0031.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_779468.1| periplasmic binding protein [Rhodopseudomonas p... 324 7e-87 ref|YP_578912.1| periplasmic binding protein [Nitrobacter hambur... 322 3e-86 ref|YP_567771.1| periplasmic binding protein [Rhodopseudomonas p... 320 1e-85 ref|YP_004107140.1| periplasmic-binding protein [Rhodopseudomona... 317 9e-85 ref|YP_001989824.1| periplasmic binding protein [Rhodopseudomona... 313 2e-83 >ref|YP_779468.1| periplasmic binding protein [Rhodopseudomonas palustris BisA53] gb|ABJ04488.1| periplasmic binding protein [Rhodopseudomonas palustris BisA53] Length = 278 Score = 324 bits (831), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 166/254 (65%), Positives = 198/254 (77%), Gaps = 1/254 (0%) Query: 19 PRIASMNVCGDQLVLSLADPDQIIGLSRFSRDAWQSWAAEKARNFPRLSGEAEDVLLLKP 78 PRIAS NVC DQL+++LADP QI GLS +SRD QSW A +A F +LSG AED+L+L+P Sbjct: 25 PRIASTNVCTDQLLMTLADPPQIAGLSPYSRDPAQSWLAAEAHRFRKLSGNAEDLLMLRP 84 Query: 79 DLVVVSLFDKRATRDLLKANGLHLVEFTV-PRTLDEVKDQIRAMGDVVQHPDRAEAEIAR 137 DLVV +DKRATR+LLK G+HLV F V P +LDEVK QIR M + HPDRA AE+AR Sbjct: 85 DLVVSGSYDKRATRELLKQQGVHLVAFNVVPESLDEVKAQIRQMAALTGHPDRAAAEVAR 144 Query: 138 LDAATARARAAASAHHYRVLPLERRGFVPGDGSLVSSLLAATGLANAAGELGLSAGGFAS 197 LD A A AR A + +VLPL RRG+V G GSL++ L A GLANAAG+LG+++GGFAS Sbjct: 145 LDQAIAGARRAVAQKPLKVLPLWRRGWVSGQGSLINLLFAEIGLANAAGDLGIASGGFAS 204 Query: 198 LEAIVKLRPDFILVSEAGDRAEDDGRAFLLHPALERFYPQSKRIVLPERLTVCGGVMLAD 257 LEAI+K RPD ILV++ GD AED+G A LLHPALE+FYP SKRI++PERLTVCGGVMLAD Sbjct: 205 LEAIIKARPDLILVADGGDFAEDEGTALLLHPALEKFYPASKRIIIPERLTVCGGVMLAD 264 Query: 258 ALDRLTEELQRVRR 271 ALD L +EL RV R Sbjct: 265 ALDLLVKELARVAR 278 >ref|YP_578912.1| periplasmic binding protein [Nitrobacter hamburgensis X14] gb|ABE64452.1| periplasmic binding protein [Nitrobacter hamburgensis X14] Length = 299 Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 162/260 (62%), Positives = 206/260 (79%), Gaps = 1/260 (0%) Query: 11 VSISFAAGP-RIASMNVCGDQLVLSLADPDQIIGLSRFSRDAWQSWAAEKARNFPRLSGE 69 V+ + AA P R+AS+N+C DQL+++LADP QI+GLS +SRDA +SWAA +A+ + RLSGE Sbjct: 38 VTQTQAADPQRVASINLCTDQLLMTLADPAQILGLSPYSRDAARSWAATEAKKYRRLSGE 97 Query: 70 AEDVLLLKPDLVVVSLFDKRATRDLLKANGLHLVEFTVPRTLDEVKDQIRAMGDVVQHPD 129 AEDVL+L+PD+VV S + KR TR+LLK G+ + EF + +++D+VK+QIR MGD+V HPD Sbjct: 98 AEDVLMLRPDVVVASRYMKRTTRELLKQQGMRVAEFDIAKSIDDVKEQIRRMGDLVGHPD 157 Query: 130 RAEAEIARLDAATARARAAASAHHYRVLPLERRGFVPGDGSLVSSLLAATGLANAAGELG 189 RAEA+IARLDAA ARAR A YRVL L RRG+V GD S+ S+LL+ TGL+NAA L Sbjct: 158 RAEAQIARLDAAIARAREAVGRKPYRVLALSRRGWVSGDDSVTSALLSITGLSNAASGLD 217 Query: 190 LSAGGFASLEAIVKLRPDFILVSEAGDRAEDDGRAFLLHPALERFYPQSKRIVLPERLTV 249 +S+GGFA LE IV RPDFIL+S+ D A+D+G A LLHPALE+ YP S+RIV+PE LTV Sbjct: 218 ISSGGFAKLETIVADRPDFILISDDSDVADDEGSALLLHPALEKLYPSSRRIVIPEDLTV 277 Query: 250 CGGVMLADALDRLTEELQRV 269 CGG MLADALDRL EL+RV Sbjct: 278 CGGPMLADALDRLVAELKRV 297 >ref|YP_567771.1| periplasmic binding protein [Rhodopseudomonas palustris BisB5] gb|ABE37870.1| periplasmic binding protein [Rhodopseudomonas palustris BisB5] Length = 279 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 167/251 (66%), Positives = 200/251 (79%) Query: 19 PRIASMNVCGDQLVLSLADPDQIIGLSRFSRDAWQSWAAEKARNFPRLSGEAEDVLLLKP 78 PR+AS+NVC DQL+++LADP+QI+GLS ++RD +S+ A KA FP LSGEAEDVL+LKP Sbjct: 27 PRLASINVCTDQLLMTLADPEQILGLSPYARDEARSFLANKAAAFPMLSGEAEDVLMLKP 86 Query: 79 DLVVVSLFDKRATRDLLKANGLHLVEFTVPRTLDEVKDQIRAMGDVVQHPDRAEAEIARL 138 D+VV + KRATR+LLK G ++EF PRTLDEVK IR MGD+V HPDRA A AR+ Sbjct: 87 DIVVTGRYTKRATRELLKQQGQRVIEFDTPRTLDEVKALIRTMGDLVGHPDRAVAANARI 146 Query: 139 DAATARARAAASAHHYRVLPLERRGFVPGDGSLVSSLLAATGLANAAGELGLSAGGFASL 198 D ATA AR AAS +RVLPLERRG+V G SL++SLL+ GL NAA LG+ GGFASL Sbjct: 147 DTATATARKAASDKAFRVLPLERRGWVSGGDSLMTSLLSTVGLVNAASALGIKLGGFASL 206 Query: 199 EAIVKLRPDFILVSEAGDRAEDDGRAFLLHPALERFYPQSKRIVLPERLTVCGGVMLADA 258 EA+V LRPD++L+SE GD AED+GRAF+LHPALERFYP SKRI +PERLTVCGG MLADA Sbjct: 207 EAVVSLRPDYLLISEDGDFAEDEGRAFVLHPALERFYPPSKRITIPERLTVCGGPMLADA 266 Query: 259 LDRLTEELQRV 269 LD L+ EL RV Sbjct: 267 LDHLSAELSRV 277 >ref|YP_004107140.1| periplasmic-binding protein [Rhodopseudomonas palustris DX-1] gb|ADU42407.1| periplasmic binding protein [Rhodopseudomonas palustris DX-1] Length = 270 Score = 317 bits (813), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 162/253 (64%), Positives = 196/253 (77%) Query: 19 PRIASMNVCGDQLVLSLADPDQIIGLSRFSRDAWQSWAAEKARNFPRLSGEAEDVLLLKP 78 P++ S+N C DQL+L+LADPDQI+GLS ++RDA +S+ A A FP+LSGEAE+VL+LKP Sbjct: 18 PKVVSINACTDQLLLTLADPDQILGLSPYARDADRSFLAAAAARFPQLSGEAEEVLMLKP 77 Query: 79 DLVVVSLFDKRATRDLLKANGLHLVEFTVPRTLDEVKDQIRAMGDVVQHPDRAEAEIARL 138 D VV F KRATR+LLK G +VEF +T+DE K QIR M D++ HP+RA+A IAR+ Sbjct: 78 DFVVGGRFTKRATRELLKQMGQRIVEFDSVKTIDESKAQIRQMADLLDHPERADASIARI 137 Query: 139 DAATARARAAASAHHYRVLPLERRGFVPGDGSLVSSLLAATGLANAAGELGLSAGGFASL 198 DAA RA+ AAS VLPL RRG+V G SL+S+LL GL NAA LG + GGFASL Sbjct: 138 DAAVTRAKQAASRTRLTVLPLARRGWVSGRDSLISALLDTVGLGNAASRLGFARGGFASL 197 Query: 199 EAIVKLRPDFILVSEAGDRAEDDGRAFLLHPALERFYPQSKRIVLPERLTVCGGVMLADA 258 EA+V LRPDF+L+SE D AED+GRAF+LHPAL+RFYP SKRI +PERLTVCGG MLADA Sbjct: 198 EAMVALRPDFLLISEDSDFAEDEGRAFVLHPALQRFYPPSKRITVPERLTVCGGPMLADA 257 Query: 259 LDRLTEELQRVRR 271 LDRLTEEL RV R Sbjct: 258 LDRLTEELIRVER 270 >ref|YP_001989824.1| periplasmic binding protein [Rhodopseudomonas palustris TIE-1] gb|ACE99348.1| periplasmic binding protein [Rhodopseudomonas palustris TIE-1] Length = 269 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 160/253 (63%), Positives = 196/253 (77%) Query: 19 PRIASMNVCGDQLVLSLADPDQIIGLSRFSRDAWQSWAAEKARNFPRLSGEAEDVLLLKP 78 P++ S+N C DQL+L+LADPDQI+GLS ++RDA +S+ A +A FP+LSGEAE+VL+LKP Sbjct: 17 PKVVSINACTDQLLLTLADPDQILGLSPYARDADRSFLAAEAARFPQLSGEAEEVLMLKP 76 Query: 79 DLVVVSLFDKRATRDLLKANGLHLVEFTVPRTLDEVKDQIRAMGDVVQHPDRAEAEIARL 138 D+VV + KRATR+LLK G + EF +T+DE K QIR M D++ HP+RA A IAR+ Sbjct: 77 DIVVGGRYTKRATRELLKQMGQRVAEFDSVKTIDEAKAQIRQMADLLGHPERAGAAIARI 136 Query: 139 DAATARARAAASAHHYRVLPLERRGFVPGDGSLVSSLLAATGLANAAGELGLSAGGFASL 198 DAA RA+ AAS VLPL RRG+V G SL+++LL GL NAA LGL GGFASL Sbjct: 137 DAAVTRAKQAASHTRLTVLPLARRGWVSGRDSLINALLDTVGLGNAASGLGLQRGGFASL 196 Query: 199 EAIVKLRPDFILVSEAGDRAEDDGRAFLLHPALERFYPQSKRIVLPERLTVCGGVMLADA 258 EA+V LRPDF+L+SE D AED+GRAF+LHPAL+RFYP SKRI +PERLTVCGG MLADA Sbjct: 197 EAVVALRPDFLLISEDSDFAEDEGRAFVLHPALQRFYPPSKRITVPERLTVCGGPMLADA 256 Query: 259 LDRLTEELQRVRR 271 LDRLTEEL RV R Sbjct: 257 LDRLTEELIRVER 269