BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0023.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_578380.1| hypothetical protein Nham_3185 [Nitrobacter ham... 270 2e-70 ref|NP_774162.1| hypothetical protein bll7522 [Bradyrhizobium ja... 249 2e-64 ref|YP_779810.1| hypothetical protein RPE_0874 [Rhodopseudomonas... 238 7e-61 ref|YP_319168.1| hypothetical protein Nwi_2563 [Nitrobacter wino... 236 2e-60 ref|ZP_01045199.1| hypothetical protein NB311A_14707 [Nitrobacte... 230 1e-58 >ref|YP_578380.1| hypothetical protein Nham_3185 [Nitrobacter hamburgensis X14] gb|ABE63920.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 255 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 151/260 (58%), Positives = 185/260 (71%), Gaps = 23/260 (8%) Query: 1 MIRRLIV-LTVAATALSMGQAAAQSAFPAPLPNQAGKAGTASDPAFPPVNG--------M 51 ++RRLIV L +A A S+ A Q+ FPAPLPN G GT +DPAFPPV G Sbjct: 2 IVRRLIVPLILAVFATSVTDALGQTPFPAPLPN--GAVGTVNDPAFPPVRGSVGTPNDSA 59 Query: 52 RPSQAGTAS--------DSAFPPVNGAPAARVGATPSAFPSSGAAPIAGGGLSSPPPPGA 103 PS GT++ DSAFPPVNG +A+ A P+AFPS GAAP+ GG +PPP A Sbjct: 60 FPSVNGTSARSTAAPRQDSAFPPVNGTTSAKADA-PAAFPSGGAAPMLGG-FGAPPPRQA 117 Query: 104 GGGAADACMKNFTPLREDAEKRGKAIKAASDRHASPQEACKLIGNYSQAEIKMIKYVDTN 163 G + CMK F PLRE AEKRGK I+AA RHA P EACKLIG YSQAEIKM+K++DT+ Sbjct: 118 GPPGGEECMKEFVPLREAAEKRGKLIQAAGARHAPPDEACKLIGQYSQAEIKMVKFIDTH 177 Query: 164 AQKCGIPPQIADQLKAGHKNTEALLKKVCNVAEQAAAQPRGPAGPTLSDVLGSSASLPEA 223 +QKCGIP + Q++A HK TEA+L+KVC+VA+Q A+ R PAGP+LS+VLGS+ +PEA Sbjct: 178 SQKCGIPDNVGKQMRANHKATEAMLQKVCDVAKQ--AKMRAPAGPSLSEVLGSAGGMPEA 235 Query: 224 TPTKKGGSTFDTLNGNVLTR 243 T +KKGGSTFDTL+GNVLTR Sbjct: 236 TTSKKGGSTFDTLSGNVLTR 255 >ref|NP_774162.1| hypothetical protein bll7522 [Bradyrhizobium japonicum USDA 110] dbj|BAC52787.1| bll7522 [Bradyrhizobium japonicum USDA 110] Length = 219 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 151/246 (61%), Positives = 168/246 (68%), Gaps = 30/246 (12%) Query: 1 MIRRLIVLTVAATALSMGQ--AAAQSAFPAPLPNQAGKAGTASDPAFPPVNGMRPS-QAG 57 MIR L+V AA ++MG A AQSAFPAPLPNQA AS AFPPVNG P+ G Sbjct: 1 MIRHLMVPITAAM-ITMGAVGAYAQSAFPAPLPNQA-----ASSSAFPPVNGSAPTASVG 54 Query: 58 TASDSAFPPVNGAPAARVGATPSAFPSSGAAPIAGGGLSSPPPPGAGGGAADACMKNFTP 117 TA S+F PVNGA SA P + A PG + CMK F P Sbjct: 55 TAPQSSF-PVNGAAPVGGAGAFSAAPPTQA-------------PG------EDCMKAFIP 94 Query: 118 LREDAEKRGKAIKAASDRHASPQEACKLIGNYSQAEIKMIKYVDTNAQKCGIPPQIADQL 177 LRE+AEKRGKAIKAASDRHA P EACKLI N+ QAE+KMIKYV+TNA KCGIPPQ+ Q+ Sbjct: 95 LREEAEKRGKAIKAASDRHAPPDEACKLIRNFGQAEMKMIKYVETNAAKCGIPPQVGAQM 154 Query: 178 KAGHKNTEALLKKVCNVAEQAAAQPRGPAGPTLSDVLGSSASLPEATPTKKGGSTFDTLN 237 K GHKNTEA+ KVCNVA+Q QPRGPAGP+LS+VLG S S PEA KKGGSTFDTLN Sbjct: 155 KDGHKNTEAMTTKVCNVAQQMQNQPRGPAGPSLSEVLG-SGSAPEANAGKKGGSTFDTLN 213 Query: 238 GNVLTR 243 GNVLTR Sbjct: 214 GNVLTR 219 >ref|YP_779810.1| hypothetical protein RPE_0874 [Rhodopseudomonas palustris BisA53] gb|ABJ04830.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 227 Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 145/251 (57%), Positives = 174/251 (69%), Gaps = 35/251 (13%) Query: 2 IRRL-IVLTVAATALSMGQAAAQSAFPAPLPNQAGKAGTASDPAFPPVNGMRPSQAGTAS 60 IRR + LT+A A+S A AQ AFPAPLPNQ+ + ++S P FPPVNG Sbjct: 3 IRRSSLPLTLAVLAVSTASALAQGAFPAPLPNQSSTSQSSSSP-FPPVNG---------- 51 Query: 61 DSAFPPVNGAPAARVGATPSAFPSSGAAPIAGGGLSSPP-------PPGAGGGAADACMK 113 APAA +GA PS FPS+GA P++GGG PP PPG D CMK Sbjct: 52 --------AAPAASIGAPPSGFPSAGAPPVSGGGAFGPPPGQQQAGPPGG-----DDCMK 98 Query: 114 NFTPLREDAEKRGKAIKAASDRHASPQEACKLIGNYSQAEIKMIKYVDTNAQKCGIPPQI 173 F PLREDAEKRGKAIKAA +R A P+EACKLIGN+SQAE+KMIK++++NA +CGIPP I Sbjct: 99 KFMPLREDAEKRGKAIKAAGERRAPPEEACKLIGNFSQAELKMIKFIESNAARCGIPPDI 158 Query: 174 ADQLKAGHKNTEALLKKVCNVAEQAAAQPRGPAGPTLSDVLGSSASLPEATPTKK-GGST 232 Q++A HKNT + +KVC VA+Q Q RGPAGP+LSDVLGSSA++PEA K+ GGST Sbjct: 159 GKQMQASHKNTVQMQQKVCGVAQQ--QQQRGPAGPSLSDVLGSSAAIPEANTAKRSGGST 216 Query: 233 FDTLNGNVLTR 243 FDTLNGNVLTR Sbjct: 217 FDTLNGNVLTR 227 >ref|YP_319168.1| hypothetical protein Nwi_2563 [Nitrobacter winogradskyi Nb-255] gb|ABA05816.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 256 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 137/262 (52%), Positives = 169/262 (64%), Gaps = 26/262 (9%) Query: 1 MIRRLIV-LTVAATALSMGQAAAQSAFPAPLPNQAGKAGTASDPAFPPVNGMRPSQAGTA 59 ++ R+IV LT+A + Q+ FPAPLPN G GTASD FPPVNG + + Sbjct: 2 IVPRMIVPLTLAVFVIGTTGVLGQTPFPAPLPN--GGTGTASDSPFPPVNGAPAQKTASP 59 Query: 60 SDSAFPPVNGAPAARVGAT-----------------PSAFPSSGAAPIAGGGLSSPPPPG 102 DS FPPVNGAPA R + PSAFPS GA P+ GG +P Sbjct: 60 QDSPFPPVNGAPAQRAATSQASPFPPVNGASATMSAPSAFPSGGATPL--GGFGAPQQQA 117 Query: 103 AGGGAADACMKNFTPLREDAEKRGKAIKAASDRHASPQEACKLIGNYSQAEIKMIKYVDT 162 G AD CMK+F PLR+ AEKRGK I+AAS R A P EACKLIG Y+QAE +MIK++D Sbjct: 118 GPPGGAD-CMKDFLPLRDAAEKRGKLIQAASARQAPPDEACKLIGQYAQAEARMIKFIDA 176 Query: 163 NAQKCGIPPQIADQLKAGHKNTEALLKKVCNVAEQAAAQPRGPAGPTLSDVLGS-SASLP 221 N+ +CGIP + Q+ A HK+TE++ +KVC+VA+QA RGPAGP+LS+ LGS S LP Sbjct: 177 NSNRCGIPDNVGKQMHANHKSTESMQQKVCDVAKQAKM--RGPAGPSLSEALGSASGGLP 234 Query: 222 EATPTKKGGSTFDTLNGNVLTR 243 E T K+GGSTFDTL+GNVLTR Sbjct: 235 EVTTPKRGGSTFDTLSGNVLTR 256 >ref|ZP_01045199.1| hypothetical protein NB311A_14707 [Nitrobacter sp. Nb-311A] gb|EAQ36527.1| hypothetical protein NB311A_14707 [Nitrobacter sp. Nb-311A] Length = 238 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 136/244 (55%), Positives = 168/244 (68%), Gaps = 9/244 (3%) Query: 1 MIRRLIVLTVAATALSMGQAAAQSAFPAPLPNQAGKAGTASDPAFPPVNGMRPSQAGTAS 60 ++R ++ LT+A A+ Q+ FPAPLPN G GT +DPAFPPVNG Sbjct: 3 ILRMIVSLTLAVFAIGTTAVLGQTPFPAPLPN--GATGTVNDPAFPPVNGAPAQMTAAPR 60 Query: 61 DSAFPPVNGAPAARVGATPSAFPSSGAAPIAGGGLSSPPPPGAGGGAADACMKNFTPLRE 120 +S FPPVNG +A +GA P+AFPS GAAP+ G G + G GG + CMK F PLR+ Sbjct: 61 NSPFPPVNGT-SATMGA-PAAFPSGGAAPLGGLGGPARQQAGPPGG--EDCMKEFMPLRD 116 Query: 121 DAEKRGKAIKAASDRHASPQEACKLIGNYSQAEIKMIKYVDTNAQKCGIPPQIADQLKAG 180 AEKRGK I+ AS RHA P EACKLIG YSQAE KMIK++DTN+++CGIP + Q++ Sbjct: 117 AAEKRGKLIQTASARHAPPDEACKLIGQYSQAEAKMIKFIDTNSRRCGIPDNVGAQMRTN 176 Query: 181 HKNTEALLKKVCNVAEQAAAQPRGPAGPTLSDVLGS-SASLPEATPTKKGGSTFDTLNGN 239 HK TE++ +KVC VA+QA RGPAGP+LS+ LGS S LPE T KKGGSTFDTL+GN Sbjct: 177 HKATESMQQKVCEVAKQAKM--RGPAGPSLSEALGSASGGLPEVTTPKKGGSTFDTLSGN 234 Query: 240 VLTR 243 VLTR Sbjct: 235 VLTR 238