BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0021.p         (134 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_779812.1| hypothetical protein RPE_0876 [Rhodopseudomonas...   167   3e-40
ref|YP_534550.1| hypothetical protein RPC_4709 [Rhodopseudomonas...   159   2e-37
ref|YP_578378.1| hypothetical protein Nham_3183 [Nitrobacter ham...   153   1e-35
ref|ZP_01045197.1| hypothetical protein NB311A_14697 [Nitrobacte...   150   5e-35
ref|YP_319166.1| hypothetical protein Nwi_2561 [Nitrobacter wino...   150   7e-35

>ref|YP_779812.1| hypothetical protein RPE_0876 [Rhodopseudomonas palustris BisA53]
 gb|ABJ04832.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 174

 Score =  167 bits (424), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 113/134 (84%)

Query: 1   MRQVELHREHVVLRRAVLGMRMAVNVRVSDFLGVAVRGIDDAQMLVLVHRDPALSIPLGS 60
           +RQ+ELHRE VVLRRAV GM+MAVNVRVSDFLGVA+RG  + +MLVL HRDP+LSIPLG+
Sbjct: 41  VRQIELHRERVVLRRAVAGMQMAVNVRVSDFLGVALRGRGEDRMLVLAHRDPSLSIPLGA 100

Query: 61  SSDAEEISSAWQMWSDIFRLPQLTEPAPRTPSPRRRRRNAIRARRPKFLVRRRAGFRLHG 120
           SSDA+EI +AWQMWS+IF LPQLTE   R P+PRRRR NA++ARRP+ L+RRR G  L+ 
Sbjct: 101 SSDADEIETAWQMWSEIFALPQLTEQPVREPAPRRRRHNAVKARRPRILLRRRIGALLNE 160

Query: 121 TSVHRGEREIIARD 134
            ++  GEREIIAR+
Sbjct: 161 AAIFSGEREIIARN 174


>ref|YP_534550.1| hypothetical protein RPC_4709 [Rhodopseudomonas palustris BisB18]
 gb|ABD90231.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 174

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 98/134 (73%)

Query: 1   MRQVELHREHVVLRRAVLGMRMAVNVRVSDFLGVAVRGIDDAQMLVLVHRDPALSIPLGS 60
           +RQ+ELHRE V+LRR V GMRMAVNVRV DF+G+A R  D+ +ML+L HRDP+LSIPL  
Sbjct: 41  IRQIELHRERVILRREVGGMRMAVNVRVCDFIGIASRNTDNGKMLLLQHRDPSLSIPLCV 100

Query: 61  SSDAEEISSAWQMWSDIFRLPQLTEPAPRTPSPRRRRRNAIRARRPKFLVRRRAGFRLHG 120
            +D +EI +A   WS IF LPQL E   R P+ RRRR N I+ RRPKFL RR+AG  L+ 
Sbjct: 101 GADFDEIEAAASQWSAIFALPQLPEDKTREPAQRRRRHNVIKDRRPKFLARRKAGDLLNE 160

Query: 121 TSVHRGEREIIARD 134
              ++GE EIIARD
Sbjct: 161 AGNYQGEDEIIARD 174


>ref|YP_578378.1| hypothetical protein Nham_3183 [Nitrobacter hamburgensis X14]
 gb|ABE63918.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 173

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 1   MRQVELHREHVVLRRAVLGMRMAVNVRVSDFLGVAVRGIDDAQMLVLVHRDPALSIPLGS 60
           +RQ+ELHRE V L R V GM+M +NVRV +F+GV VR   + + LVL+HRDP+L+IPL  
Sbjct: 41  VRQIELHRERVTLHRVVHGMQMTINVRVKEFIGVTVRDTPEGRALVLLHRDPSLAIPLLV 100

Query: 61  SSDAEEISSAWQMWSDIFRLPQLTEPAPRTPSPRRRRRNAIRARRPKFLVRRRAGFRLHG 120
           + DA E ++AWQ WS+I  LPQL +   R P+PRRRR NAI  RRP FLVRRR+G  L+ 
Sbjct: 101 TEDATERAAAWQTWSEILALPQLADDK-RDPAPRRRRSNAISERRPTFLVRRRSGDLLNP 159

Query: 121 TSVHRGEREIIARD 134
            SV+RGEREIIAR+
Sbjct: 160 ASVYRGEREIIARN 173


>ref|ZP_01045197.1| hypothetical protein NB311A_14697 [Nitrobacter sp. Nb-311A]
 gb|EAQ36525.1| hypothetical protein NB311A_14697 [Nitrobacter sp. Nb-311A]
          Length = 147

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 98/134 (73%), Gaps = 1/134 (0%)

Query: 1   MRQVELHREHVVLRRAVLGMRMAVNVRVSDFLGVAVRGIDDAQMLVLVHRDPALSIPLGS 60
           +RQ+ELHRE V L RAV GM+M +NVRVS+F+GV VR   D + LVL+HRDP+L+IPL  
Sbjct: 15  IRQIELHRERVTLHRAVRGMKMTINVRVSEFIGVTVRDTADGRALVLLHRDPSLAIPLLV 74

Query: 61  SSDAEEISSAWQMWSDIFRLPQLTEPAPRTPSPRRRRRNAIRARRPKFLVRRRAGFRLHG 120
           + DA E + A Q WS+I  LPQL +   R P+PRRRR N I  RR  FL+RRR+G  L+ 
Sbjct: 75  TEDAGECAVAGQTWSEILALPQLAD-GTRDPAPRRRRSNTISGRRSTFLMRRRSGDLLNP 133

Query: 121 TSVHRGEREIIARD 134
            +V+RGEREIIARD
Sbjct: 134 AAVYRGEREIIARD 147


>ref|YP_319166.1| hypothetical protein Nwi_2561 [Nitrobacter winogradskyi Nb-255]
 gb|ABA05814.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 173

 Score =  150 bits (378), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 101/134 (75%), Gaps = 1/134 (0%)

Query: 1   MRQVELHREHVVLRRAVLGMRMAVNVRVSDFLGVAVRGIDDAQMLVLVHRDPALSIPLGS 60
           +RQ+ELHRE V L RAV GM+M ++VRVS+F+GV VR     + LVL+HRDP+L+IPL  
Sbjct: 41  IRQIELHRERVTLHRAVRGMKMTISVRVSEFIGVTVRDTSHGRALVLLHRDPSLAIPLLV 100

Query: 61  SSDAEEISSAWQMWSDIFRLPQLTEPAPRTPSPRRRRRNAIRARRPKFLVRRRAGFRLHG 120
           + DA E ++AWQ WS++  LPQL +   R P+PRRRRRNAI  RRP FLVRRR G  L+ 
Sbjct: 101 TEDAGECAAAWQTWSEVLALPQLADDT-REPAPRRRRRNAISDRRPAFLVRRRCGHSLNP 159

Query: 121 TSVHRGEREIIARD 134
            ++HRGEREIIARD
Sbjct: 160 AAIHRGEREIIARD 173