BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0016.p (495 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774155.1| 3-deoxy-D-manno-octulosonic acid transferase-li... 629 e-178 ref|YP_001207963.1| 3-deoxy-D-manno-octulosonic-acid transferase... 611 e-172 ref|YP_485474.1| three-deoxy-D-manno-octulosonic-acid transferas... 604 e-170 ref|YP_571229.1| three-deoxy-D-manno-octulosonic-acid transferas... 594 e-167 ref|YP_578373.1| three-deoxy-D-manno-octulosonic-acid transferas... 583 e-164 >ref|NP_774155.1| 3-deoxy-D-manno-octulosonic acid transferase-like protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52780.1| 3-deoxy-D-manno-octulosonic acid transferase-like protein [Bradyrhizobium japonicum USDA 110] Length = 448 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 306/389 (78%), Positives = 341/389 (87%) Query: 1 VYRKLSSAMVPLAPALIKRRLKLGKEDPERVGERRGVSADTRPQGPLVWIHGASVGEVLA 60 +Y++L+S +VPLAPALIKRRLK GKEDP RVGERRG+S D RP GPLVWIHGASVGEVLA Sbjct: 25 MYQRLASGLVPLAPALIKRRLKQGKEDPARVGERRGLSRDVRPHGPLVWIHGASVGEVLA 84 Query: 61 AAGLIERLRALNLRILLTSGTVTSAAIVAKRFPPDVIHQYVPYDSPRYVTRFLDHWHPSL 120 AA LI RLR LNLRILLTSGTVTSAA+VAKRFPPDVIHQYVPYDSPRYV RFLDHW PSL Sbjct: 85 AAALIGRLRDLNLRILLTSGTVTSAAVVAKRFPPDVIHQYVPYDSPRYVARFLDHWKPSL 144 Query: 121 ALFIESDLWPNLILSSAARRLPMVLINGRMSQRSFPRWRRVSNTIGALLGRFDICLAQSN 180 ALFIESDLWPNLIL+ A RR+PMVLINGRMS RSFPRWRR+ TI ALL RFDICLAQS Sbjct: 145 ALFIESDLWPNLILAGATRRVPMVLINGRMSPRSFPRWRRMYGTISALLSRFDICLAQSK 204 Query: 181 TDAERFAALGSHNVVVTGNLKLDVAAPPADPAKLERLMSVTRGRAIVVAASTHPGEEEIL 240 DAERF+ALG +V+ TGNLKLDV APPADPAKLERLM++TRGR I+VAASTHPGE+E+L Sbjct: 205 LDAERFSALGGRDVLTTGNLKLDVPAPPADPAKLERLMAMTRGRPIIVAASTHPGEDEML 264 Query: 241 IEAHKSLAGFFPGLLTVIVPRHAARGEAVARLVTEAGLRPGLRSHEDLPVATTDIYVADT 300 + AH+SL GFFP LLTVIVPRH RG ++A L+T +GL+P LRS E+LP A TD+YVADT Sbjct: 265 VAAHRSLVGFFPQLLTVIVPRHPDRGSSIAGLITASGLKPALRSREELPTAATDVYVADT 324 Query: 301 MGELGLFYRLAPIVFMGGSLVAHGGQNPIEAIKLGAAIVHGPHVFNFTDVYEALDRAGGA 360 MGELGLFYRL+PIVFMGGSL+ HGGQNPIEAIKLGAAIVHGPHVFNF DVYEALD +GGA Sbjct: 325 MGELGLFYRLSPIVFMGGSLIRHGGQNPIEAIKLGAAIVHGPHVFNFADVYEALDASGGA 384 Query: 361 RRADDREALVKQLGQFLADSXLRARRRTA 389 R+AD +E LVKQLGQ LAD +R + + A Sbjct: 385 RQADTQEILVKQLGQLLADPAVRDKIQQA 413 >ref|YP_001207963.1| 3-deoxy-D-manno-octulosonic-acid transferase [Bradyrhizobium sp. ORS 278] emb|CAL79748.1| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) [Bradyrhizobium sp. ORS 278] Length = 435 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 302/378 (79%), Positives = 332/378 (87%) Query: 1 VYRKLSSAMVPLAPALIKRRLKLGKEDPERVGERRGVSADTRPQGPLVWIHGASVGEVLA 60 VYR LSSA VPLAPALI++RLK GKEDPER ERRG+S DTRPQGPLVWIHGASVGEVLA Sbjct: 11 VYRGLSSAAVPLAPALIRQRLKRGKEDPERSDERRGLSHDTRPQGPLVWIHGASVGEVLA 70 Query: 61 AAGLIERLRALNLRILLTSGTVTSAAIVAKRFPPDVIHQYVPYDSPRYVTRFLDHWHPSL 120 AA LIERLR LN+RIL+TSGTVTSAAIVAKRFPPDVIHQYVPYD+PR+V RF+DHW PSL Sbjct: 71 AAALIERLRELNIRILITSGTVTSAAIVAKRFPPDVIHQYVPYDTPRFVERFIDHWRPSL 130 Query: 121 ALFIESDLWPNLILSSAARRLPMVLINGRMSQRSFPRWRRVSNTIGALLGRFDICLAQSN 180 LFIESDLWPNLIL+ A+RR+PMV+INGRMSQRSFPRWRR++ TI ALLGRFD+CL QS Sbjct: 131 GLFIESDLWPNLILAGASRRVPMVVINGRMSQRSFPRWRRMAGTISALLGRFDLCLTQSE 190 Query: 181 TDAERFAALGSHNVVVTGNLKLDVAAPPADPAKLERLMSVTRGRAIVVAASTHPGEEEIL 240 DAERF+ALG+ NV+ TGNLKLDV APPAD AKL+RL ++TRGR +VVAASTHPGEEEIL Sbjct: 191 ADAERFSALGARNVITTGNLKLDVPAPPADAAKLDRLTAMTRGRPVVVAASTHPGEEEIL 250 Query: 241 IEAHKSLAGFFPGLLTVIVPRHAARGEAVARLVTEAGLRPGLRSHEDLPVATTDIYVADT 300 I AHK+LA P LLTVIVPRH RG AVA L+ AGL LRS E+ P+A TDIYVADT Sbjct: 251 IGAHKALAATHPSLLTVIVPRHPHRGPAVAELIAGAGLHGALRSREEQPLAGTDIYVADT 310 Query: 301 MGELGLFYRLAPIVFMGGSLVAHGGQNPIEAIKLGAAIVHGPHVFNFTDVYEALDRAGGA 360 MGELGLFYRLAPIVFMGGSLV HGGQNPIEA+KLGAA+VHGPHVFNFTDVYEALD+A GA Sbjct: 311 MGELGLFYRLAPIVFMGGSLVEHGGQNPIEAVKLGAAVVHGPHVFNFTDVYEALDKAAGA 370 Query: 361 RRADDREALVKQLGQFLA 378 R A DREALV+QL Q LA Sbjct: 371 RLAHDREALVRQLRQLLA 388 >ref|YP_485474.1| three-deoxy-D-manno-octulosonic-acid transferase-like [Rhodopseudomonas palustris HaA2] gb|ABD06563.1| Three-deoxy-D-manno-octulosonic-acid transferase-like [Rhodopseudomonas palustris HaA2] Length = 448 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 296/393 (75%), Positives = 333/393 (84%) Query: 1 VYRKLSSAMVPLAPALIKRRLKLGKEDPERVGERRGVSADTRPQGPLVWIHGASVGEVLA 60 VY++L++ + PLAP LI+RRLK GKE+P RV ERRGV+A RP GPLVWIHGASVGEVLA Sbjct: 25 VYQQLTAGISPLAPLLIQRRLKQGKEEPARVDERRGVAAHVRPHGPLVWIHGASVGEVLA 84 Query: 61 AAGLIERLRALNLRILLTSGTVTSAAIVAKRFPPDVIHQYVPYDSPRYVTRFLDHWHPSL 120 AAGLIERLRALNLRILLTSGTVTSAA+VAKRFPPD+IHQ++PYD+PR+V RFLDHW PSL Sbjct: 85 AAGLIERLRALNLRILLTSGTVTSAAVVAKRFPPDIIHQFIPYDAPRFVARFLDHWQPSL 144 Query: 121 ALFIESDLWPNLILSSAARRLPMVLINGRMSQRSFPRWRRVSNTIGALLGRFDICLAQSN 180 ALF+ESDLWPNLIL+SAARRLPMVLINGRMSQRSFPRWRR + TIG LLG+FDICLAQS Sbjct: 145 ALFVESDLWPNLILASAARRLPMVLINGRMSQRSFPRWRRAAATIGTLLGKFDICLAQSR 204 Query: 181 TDAERFAALGSHNVVVTGNLKLDVAAPPADPAKLERLMSVTRGRAIVVAASTHPGEEEIL 240 DAERFAALGS NV+ TGNLK+DV PP DPA+LERLM+VTRGR ++VAASTHPGEEEIL Sbjct: 205 MDAERFAALGSRNVITTGNLKMDVDPPPGDPARLERLMAVTRGRQVIVAASTHPGEEEIL 264 Query: 241 IEAHKSLAGFFPGLLTVIVPRHAARGEAVARLVTEAGLRPGLRSHEDLPVATTDIYVADT 300 ++ H+ LAG FP LLTVIVPRH RGE +A L+ +GL LRS E LP A T IYVADT Sbjct: 265 LDVHRRLAGAFPALLTVIVPRHPHRGEQIAGLIEASGLHAALRSREQLPTAATAIYVADT 324 Query: 301 MGELGLFYRLAPIVFMGGSLVAHGGQNPIEAIKLGAAIVHGPHVFNFTDVYEALDRAGGA 360 MGELGLFYRLAPIVFMGGSL+ HGGQNPIEA+KLGA+IVHGPHV NFTDVY ALD GGA Sbjct: 325 MGELGLFYRLAPIVFMGGSLIEHGGQNPIEAVKLGASIVHGPHVSNFTDVYRALDDEGGA 384 Query: 361 RRADDREALVKQLGQFLADSXLRARRRTARWRV 393 A D +ALV++ GQ L+DS R A RV Sbjct: 385 FTAADADALVRRFGQLLSDSNARQTSIDAATRV 417 >ref|YP_571229.1| three-deoxy-D-manno-octulosonic-acid transferase-like protein [Rhodopseudomonas palustris BisB5] gb|ABE41328.1| Three-deoxy-D-manno-octulosonic-acid transferase-like [Rhodopseudomonas palustris BisB5] Length = 448 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 288/383 (75%), Positives = 325/383 (84%) Query: 1 VYRKLSSAMVPLAPALIKRRLKLGKEDPERVGERRGVSADTRPQGPLVWIHGASVGEVLA 60 VY+KL++ PLA LIKRRLK GKE+ RV ERRGV+A RP GPLVWIHGASVGEVLA Sbjct: 25 VYQKLTAGFAPLATLLIKRRLKQGKEEAARVDERRGVAAHVRPHGPLVWIHGASVGEVLA 84 Query: 61 AAGLIERLRALNLRILLTSGTVTSAAIVAKRFPPDVIHQYVPYDSPRYVTRFLDHWHPSL 120 AAGLIERLRALNLRILLTSGTVTSA++V KRFPPD+IHQ++PYD+PR+V RFLDHW PSL Sbjct: 85 AAGLIERLRALNLRILLTSGTVTSASVVEKRFPPDIIHQFIPYDAPRFVARFLDHWQPSL 144 Query: 121 ALFIESDLWPNLILSSAARRLPMVLINGRMSQRSFPRWRRVSNTIGALLGRFDICLAQSN 180 ALFIESDLWPNLIL+SAARRLPMVLINGRMSQRSFPRWRR + TIG LLG+FDICLAQS Sbjct: 145 ALFIESDLWPNLILASAARRLPMVLINGRMSQRSFPRWRRAAATIGTLLGKFDICLAQSR 204 Query: 181 TDAERFAALGSHNVVVTGNLKLDVAAPPADPAKLERLMSVTRGRAIVVAASTHPGEEEIL 240 DAERF+ALGS NV+ TGNLK+DV PPADPA+LERLM+VTRGR ++VAASTHPGEEEIL Sbjct: 205 MDAERFSALGSRNVITTGNLKMDVDPPPADPARLERLMAVTRGRPVIVAASTHPGEEEIL 264 Query: 241 IEAHKSLAGFFPGLLTVIVPRHAARGEAVARLVTEAGLRPGLRSHEDLPVATTDIYVADT 300 ++ H++L G FP LLTVIVPRH RGE + LV GL+ LRS E LP A T +YVADT Sbjct: 265 LDVHRTLTGVFPTLLTVIVPRHPHRGEQIGGLVEAVGLQTALRSREQLPTAATAVYVADT 324 Query: 301 MGELGLFYRLAPIVFMGGSLVAHGGQNPIEAIKLGAAIVHGPHVFNFTDVYEALDRAGGA 360 MGELGLFYRLAPIVFMGGSL+ HGGQNPIEA+KLGA+IVHGPHV NF+DVY ALD GGA Sbjct: 325 MGELGLFYRLAPIVFMGGSLIEHGGQNPIEAVKLGASIVHGPHVSNFSDVYRALDDEGGA 384 Query: 361 RRADDREALVKQLGQFLADSXLR 383 A D +ALV++ GQ L+D R Sbjct: 385 FSAGDVDALVRRFGQLLSDDHAR 407 >ref|YP_578373.1| three-deoxy-D-manno-octulosonic-acid transferase-like [Nitrobacter hamburgensis X14] gb|ABE63913.1| Three-deoxy-D-manno-octulosonic-acid transferase-like protein [Nitrobacter hamburgensis X14] Length = 434 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 291/380 (76%), Positives = 325/380 (85%) Query: 1 VYRKLSSAMVPLAPALIKRRLKLGKEDPERVGERRGVSADTRPQGPLVWIHGASVGEVLA 60 +Y +LS+A PL PAL+KRRLK GKEDP R+ ERRG++ RP GPL+WIHGASVGEVLA Sbjct: 11 LYSRLSAAAAPLTPALLKRRLKQGKEDPARIDERRGITRQPRPAGPLIWIHGASVGEVLA 70 Query: 61 AAGLIERLRALNLRILLTSGTVTSAAIVAKRFPPDVIHQYVPYDSPRYVTRFLDHWHPSL 120 AA LIERLRALN+RILLTSGTVTSAA+VAKRFPPD+IHQYVPYDSPR+V RFLDHW P L Sbjct: 71 AAALIERLRALNIRILLTSGTVTSAAVVAKRFPPDIIHQYVPYDSPRFVARFLDHWQPGL 130 Query: 121 ALFIESDLWPNLILSSAARRLPMVLINGRMSQRSFPRWRRVSNTIGALLGRFDICLAQSN 180 ALF+ESDLWPNLIL+ ARRLPMVLINGRMS RSFPRWRR+S TI ALL +FDICL QS Sbjct: 131 ALFVESDLWPNLILAGGARRLPMVLINGRMSHRSFPRWRRLSGTIAALLEQFDICLVQSG 190 Query: 181 TDAERFAALGSHNVVVTGNLKLDVAAPPADPAKLERLMSVTRGRAIVVAASTHPGEEEIL 240 DAERF LGS NV+ TGNLKLDV APPAD A+LERL+ VTRGR +VVAASTHPGEEEIL Sbjct: 191 IDAERFTVLGSRNVITTGNLKLDVQAPPADEARLERLLFVTRGRPVVVAASTHPGEEEIL 250 Query: 241 IEAHKSLAGFFPGLLTVIVPRHAARGEAVARLVTEAGLRPGLRSHEDLPVATTDIYVADT 300 ++ H++LA FP LLTVIVPRH RGEA+AR++ +G + RS E+LP A TDIY+ADT Sbjct: 251 LKTHRTLAVHFPLLLTVIVPRHPGRGEAIARMIAASGAQVARRSLEELPTARTDIYIADT 310 Query: 301 MGELGLFYRLAPIVFMGGSLVAHGGQNPIEAIKLGAAIVHGPHVFNFTDVYEALDRAGGA 360 MGELGLFYRLAPIVFMGGSLV HGGQNPIEA+KL A+IVHGPHVFNFTDVY+ALDRAGGA Sbjct: 311 MGELGLFYRLAPIVFMGGSLVPHGGQNPIEAVKLNASIVHGPHVFNFTDVYDALDRAGGA 370 Query: 361 RRADDREALVKQLGQFLADS 380 RRA D EAL KQLG L DS Sbjct: 371 RRAGDGEALTKQLGHLLNDS 390