BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0012.p (415 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207959.1| exodeoxyribonuclease VII large subunit [Brad... 284 3e-74 ref|YP_001237810.1| exodeoxyribonuclease VII large subunit [Brad... 281 1e-73 ref|YP_578369.1| exodeoxyribonuclease VII large subunit [Nitroba... 280 3e-73 ref|ZP_08627376.1| exodeoxyribonuclease VII large subunit [Brady... 280 3e-73 ref|NP_774147.1| exodeoxyribonuclease VII large subunit [Bradyrh... 280 5e-73 >ref|YP_001207959.1| exodeoxyribonuclease VII large subunit [Bradyrhizobium sp. ORS 278] emb|CAL79744.1| putative exonuclease VII, large subunit OB-fold nucleic acid binding domain [Bradyrhizobium sp. ORS 278] Length = 538 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 136/151 (90%), Positives = 141/151 (93%) Query: 1 MTAAPNLVNAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESA 60 M A L NAPEFTVSELSSALKRTVED+FGHVRVRGEISGFRGPHSSGHCYFALKDESA Sbjct: 1 MPPAEALPNAPEFTVSELSSALKRTVEDQFGHVRVRGEISGFRGPHSSGHCYFALKDESA 60 Query: 61 KIEAVIWKFAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEE 120 KIEAVIWK H RMRFKPQEGLEVIATGKLTTYPNSSKYQIVI++LEPAG+GALMALMEE Sbjct: 61 KIEAVIWKGVHGRMRFKPQEGLEVIATGKLTTYPNSSKYQIVIEALEPAGIGALMALMEE 120 Query: 121 RKKKLAAEGLFDEARKQLLPWLPEVIGVVTS 151 RK+KL AEGLFD ARKQLLPWLPEVIGVVTS Sbjct: 121 RKRKLGAEGLFDPARKQLLPWLPEVIGVVTS 151 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/110 (67%), Positives = 80/110 (72%), Gaps = 2/110 (1%) Query: 306 RALVTTMQRLEARVAHSGQLLSALSYRGVLARGFALVRDAHGHALHSAAAVGPNAGLSIE 365 RAL T++ RL AR H+GQLLSALSYR VLARGFALVRD GH LH AA + A LSIE Sbjct: 431 RALATSILRLRARTDHAGQLLSALSYRSVLARGFALVRDEAGHPLHQAAGIESGAALSIE 490 Query: 366 FADGRVAATANADQPPATVAPDSQPKPQPREAKPAAPKRVTKPVDQGSLF 415 FADGRVAATA A P T AP + PKP RE+KPAA KR P DQGSLF Sbjct: 491 FADGRVAATAGAGSPLPTSAP-AAPKPV-RESKPAAAKRTPDPADQGSLF 538 >ref|YP_001237810.1| exodeoxyribonuclease VII large subunit [Bradyrhizobium sp. BTAi1] gb|ABQ33904.1| Exodeoxyribonuclease VII large subunit [Bradyrhizobium sp. BTAi1] Length = 536 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 135/151 (89%), Positives = 141/151 (93%) Query: 1 MTAAPNLVNAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESA 60 M A L NAPEFTVSELSSALKRTVED+FGHVRVRGEI+GFRGPHSSGHCYFALKDESA Sbjct: 1 MPPAEALPNAPEFTVSELSSALKRTVEDQFGHVRVRGEITGFRGPHSSGHCYFALKDESA 60 Query: 61 KIEAVIWKFAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEE 120 KIEAVIWK H RMRFKPQEGLEVIATGKLTTYPNSSKYQIVI++LEPAG+GALMALMEE Sbjct: 61 KIEAVIWKGVHGRMRFKPQEGLEVIATGKLTTYPNSSKYQIVIEALEPAGIGALMALMEE 120 Query: 121 RKKKLAAEGLFDEARKQLLPWLPEVIGVVTS 151 RK+KL AEGLFD ARKQLLPWLPEVIGVVTS Sbjct: 121 RKRKLGAEGLFDPARKQLLPWLPEVIGVVTS 151 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/106 (65%), Positives = 76/106 (71%), Gaps = 4/106 (3%) Query: 310 TTMQRLEARVAHSGQLLSALSYRGVLARGFALVRDAHGHALHSAAAVGPNAGLSIEFADG 369 T++ RL ARV H+GQLL+ALSYR VLARGFALVRD GH LH AA++GPNA LSIEFADG Sbjct: 435 TSISRLSARVDHAGQLLAALSYRSVLARGFALVRDDAGHPLHQAASIGPNAALSIEFADG 494 Query: 370 RVAATANADQPPATVAPDSQPKPQPREAKPAAPKRVTKPVDQGSLF 415 VAATA A AP + P RE KPAA KR P DQGSLF Sbjct: 495 VVAATAAA----GRAAPVAAPPKTARETKPAAAKRSPDPADQGSLF 536 >ref|YP_578369.1| exodeoxyribonuclease VII large subunit [Nitrobacter hamburgensis X14] gb|ABE63909.1| Exodeoxyribonuclease VII large subunit [Nitrobacter hamburgensis X14] Length = 541 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 132/145 (91%), Positives = 138/145 (95%) Query: 7 LVNAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESAKIEAVI 66 L NAPE+TVSELSSALKRTVE+ +GHVRVRGEISGFRGPH SGHCYFALKDESAKIEAVI Sbjct: 9 LANAPEYTVSELSSALKRTVENAYGHVRVRGEISGFRGPHGSGHCYFALKDESAKIEAVI 68 Query: 67 WKFAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEERKKKLA 126 WK H RMRFKPQEGLEVIATGKLTTYP SSKYQIVI++LEPAG+GALMALMEERKKKLA Sbjct: 69 WKGVHGRMRFKPQEGLEVIATGKLTTYPGSSKYQIVIEALEPAGIGALMALMEERKKKLA 128 Query: 127 AEGLFDEARKQLLPWLPEVIGVVTS 151 AEGLFDEARKQLLPWLPEVIGVVTS Sbjct: 129 AEGLFDEARKQLLPWLPEVIGVVTS 153 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/110 (62%), Positives = 81/110 (73%), Gaps = 1/110 (0%) Query: 306 RALVTTMQRLEARVAHSGQLLSALSYRGVLARGFALVRDAHGHALHSAAAVGPNAGLSIE 365 RAL T +QR EAR+ +SGQLL+A SYRGVLARGFALVRD G AL SA+AVGP A L++E Sbjct: 433 RALATLLQRHEARITYSGQLLAAFSYRGVLARGFALVRDDAGQALRSASAVGPGARLTLE 492 Query: 366 FADGRVAATANADQPPATVAPDSQPKPQPREAKPAAPKRVTKPVDQGSLF 415 F DGRVAATA+ DQ AT + + P+ R KPA+ KR K DQGSLF Sbjct: 493 FTDGRVAATADDDQSAATSSAPTGSNPRGRP-KPASGKRAAKAADQGSLF 541 >ref|ZP_08627376.1| exodeoxyribonuclease VII large subunit [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10002.1| exodeoxyribonuclease VII large subunit [Bradyrhizobiaceae bacterium SG-6C] Length = 486 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 136/153 (88%), Positives = 143/153 (93%), Gaps = 2/153 (1%) Query: 1 MTAAPN--LVNAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDE 58 M AAP L N+PEFTVSELSSALKRTVED +GHVRVRGEISGFRGPHSSGHCYFALKD+ Sbjct: 1 MPAAPAEILSNSPEFTVSELSSALKRTVEDTYGHVRVRGEISGFRGPHSSGHCYFALKDD 60 Query: 59 SAKIEAVIWKFAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALM 118 SAKIEAVIWK H RMRFKPQEGLEVIATGKLTTYP SSKYQIVI+++EPAGVGALMALM Sbjct: 61 SAKIEAVIWKGVHGRMRFKPQEGLEVIATGKLTTYPGSSKYQIVIEAIEPAGVGALMALM 120 Query: 119 EERKKKLAAEGLFDEARKQLLPWLPEVIGVVTS 151 EERKKKLAAEGLFDEARKQLLPWLP+VIGVVTS Sbjct: 121 EERKKKLAAEGLFDEARKQLLPWLPDVIGVVTS 153 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/102 (52%), Positives = 66/102 (64%), Gaps = 9/102 (8%) Query: 316 EARVAHSGQLLSALSYRGVLARGFALVRDAHGHALHSAAAVGPNAGLSIEFADGRVAATA 375 E R+ + QLL+ALSY+GVL RGFALVRD HG LH+AA+V L+IEFADGRV ATA Sbjct: 392 ETRLKYVAQLLNALSYKGVLDRGFALVRDEHGQPLHAAASVDNGQRLTIEFADGRVGATA 451 Query: 376 NADQPPATVAPDSQPKPQPREAKPAAPKRVTKPVD--QGSLF 415 + D PA ++PK P AKPA+ + V QG LF Sbjct: 452 DGDGTPA-----AKPKAVP--AKPASKRTTDFGVKKVQGDLF 486 >ref|NP_774147.1| exodeoxyribonuclease VII large subunit [Bradyrhizobium japonicum USDA 110] sp|Q89DD2.1|EX7L_BRAJA RecName: Full=Exodeoxyribonuclease 7 large subunit; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit dbj|BAC52772.1| exodeoxyribonuclease VII large subunit [Bradyrhizobium japonicum USDA 110] Length = 545 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 135/151 (89%), Positives = 140/151 (92%) Query: 1 MTAAPNLVNAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESA 60 M A L+NAPEFTVSELS +LKRTVED FGHVRVRGEISGFRG HSSGHCYFALKDESA Sbjct: 7 MPPAEPLLNAPEFTVSELSQSLKRTVEDAFGHVRVRGEISGFRGAHSSGHCYFALKDESA 66 Query: 61 KIEAVIWKFAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEE 120 KIEAVIWK H RMRFKPQEGLEVIATGKLTTYP SSKYQIVI++LEPAG+GALMALMEE Sbjct: 67 KIEAVIWKGVHGRMRFKPQEGLEVIATGKLTTYPGSSKYQIVIEALEPAGIGALMALMEE 126 Query: 121 RKKKLAAEGLFDEARKQLLPWLPEVIGVVTS 151 RKKKLAAEGLFDEARKQLLPWLPEVIGVVTS Sbjct: 127 RKKKLAAEGLFDEARKQLLPWLPEVIGVVTS 157 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/110 (70%), Positives = 85/110 (77%), Gaps = 1/110 (0%) Query: 306 RALVTTMQRLEARVAHSGQLLSALSYRGVLARGFALVRDAHGHALHSAAAVGPNAGLSIE 365 RALVT +QRL+ARV SG+LLSALSYRGVLARGFALVRD GH LHSA +VGP A + IE Sbjct: 437 RALVTLLQRLDARVEASGKLLSALSYRGVLARGFALVRDEAGHPLHSADSVGPGARVEIE 496 Query: 366 FADGRVAATANADQPPATVAPDSQPKPQPREAKPAAPKRVTKPVDQGSLF 415 FADGRV AT +AD+P QPKP +E KP APKRV KPVDQGSLF Sbjct: 497 FADGRVGATTDADRPAPPAKRAQQPKPAAQETKP-APKRVGKPVDQGSLF 545