BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0007.p         (148 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774136.1| nitrogen fixation protein [Bradyrhizobium japon...   272   2e-71
gb|AAA96138.1| nitrogen fixation protein [Bradyrhizobium japonicum]   262   1e-68
ref|YP_001237815.1| tRNA-adenosine deaminase [Bradyrhizobium sp....   256   7e-67
ref|YP_001207949.1| putative cytidine and deoxycytidylate deamin...   256   1e-66
ref|YP_530797.1| zinc-binding CMP/dCMP deaminase [Rhodopseudomon...   255   1e-66

>ref|NP_774136.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52761.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score =  272 bits (695), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/148 (87%), Positives = 139/148 (93%)

Query: 1   MSAPSFMDLALKTAENAGKAGEVPIGCVIVRGYEVIATAGNRTLTDRDPTAHAEILAIRQ 60
           + APSFMDLALKTAENAGKAGEVPIGCV+VR YEVIATA NRTLTD DPTAHAEI+A+R+
Sbjct: 5   LKAPSFMDLALKTAENAGKAGEVPIGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALRE 64

Query: 61  AAEAIGTERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFAQPT 120
           AA+ IG+ERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFA PT
Sbjct: 65  AAKKIGSERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFASPT 124

Query: 121 CHHVPEVYGAVGESESARLLREFFRERR 148
           CHH P+VY  VGESE+ARLL+EFFRERR
Sbjct: 125 CHHAPDVYSGVGESEAARLLKEFFRERR 152


>gb|AAA96138.1| nitrogen fixation protein [Bradyrhizobium japonicum]
          Length = 142

 Score =  262 bits (669), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 134/142 (94%)

Query: 7   MDLALKTAENAGKAGEVPIGCVIVRGYEVIATAGNRTLTDRDPTAHAEILAIRQAAEAIG 66
           MDLALKTAENAGKAGEVPIGCV+VR YEVIATA NRTLTD DPTAHAEI+A+R+AA+ IG
Sbjct: 1   MDLALKTAENAGKAGEVPIGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALREAAKKIG 60

Query: 67  TERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFAQPTCHHVPE 126
           +ERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFA PTCHH P+
Sbjct: 61  SERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFASPTCHHAPD 120

Query: 127 VYGAVGESESARLLREFFRERR 148
           VY  VGESE+ARLL+EFFRERR
Sbjct: 121 VYSGVGESEAARLLKEFFRERR 142


>ref|YP_001237815.1| tRNA-adenosine deaminase [Bradyrhizobium sp. BTAi1]
 gb|ABQ33909.1| tRNA-adenosine deaminase [Bradyrhizobium sp. BTAi1]
          Length = 148

 Score =  256 bits (655), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 133/148 (89%)

Query: 1   MSAPSFMDLALKTAENAGKAGEVPIGCVIVRGYEVIATAGNRTLTDRDPTAHAEILAIRQ 60
           M +PSFMDLALK AE+A  +GEVPIGCV+VR   VIATA NRTLTDRDPTAHAEILA+RQ
Sbjct: 1   MKSPSFMDLALKAAESAAISGEVPIGCVVVRDNAVIATAANRTLTDRDPTAHAEILALRQ 60

Query: 61  AAEAIGTERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFAQPT 120
           AA+ IG+ERLVDCDLYVTLEPCTMCAGAISFAR+RRLYYGAADPKGGAVESGVRFFA PT
Sbjct: 61  AAQVIGSERLVDCDLYVTLEPCTMCAGAISFARIRRLYYGAADPKGGAVESGVRFFAAPT 120

Query: 121 CHHVPEVYGAVGESESARLLREFFRERR 148
           CHHVPEVY AVGE ++A +L+ FF+ RR
Sbjct: 121 CHHVPEVYSAVGEQQAAEMLKAFFKARR 148


>ref|YP_001207949.1| putative cytidine and deoxycytidylate deaminase [Bradyrhizobium sp.
           ORS 278]
 emb|CAL79734.1| putative cytidine and deoxycytidylate deaminase [Bradyrhizobium sp.
           ORS 278]
          Length = 148

 Score =  256 bits (653), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 134/148 (90%)

Query: 1   MSAPSFMDLALKTAENAGKAGEVPIGCVIVRGYEVIATAGNRTLTDRDPTAHAEILAIRQ 60
           M++PSFMDLALK AE+A  +GEVPIGCV+VR   VIA A NRTLTDRDPTAHAEILA+RQ
Sbjct: 1   MNSPSFMDLALKAAESAAISGEVPIGCVVVRDGTVIAAAANRTLTDRDPTAHAEILALRQ 60

Query: 61  AAEAIGTERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFAQPT 120
           AA+AIG+ERL+DCDLYVTLEPCTMCAGAISFAR+RRLYYGAAD KGGAVESGVRFFA PT
Sbjct: 61  AAQAIGSERLIDCDLYVTLEPCTMCAGAISFARIRRLYYGAADSKGGAVESGVRFFAAPT 120

Query: 121 CHHVPEVYGAVGESESARLLREFFRERR 148
           CHH PEVY AVGE +SA++LREFF+ RR
Sbjct: 121 CHHAPEVYSAVGEQQSAQMLREFFKARR 148


>ref|YP_530797.1| zinc-binding CMP/dCMP deaminase [Rhodopseudomonas palustris BisB18]
 gb|ABD86478.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisB18]
          Length = 148

 Score =  255 bits (652), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 133/148 (89%)

Query: 1   MSAPSFMDLALKTAENAGKAGEVPIGCVIVRGYEVIATAGNRTLTDRDPTAHAEILAIRQ 60
           M+A SFMDLALK AE A  AGEVPIGCVIV    VIA+AGNRTLTDRDPTAHAE+LAIRQ
Sbjct: 1   MTAASFMDLALKAAETAQNAGEVPIGCVIVLNNAVIASAGNRTLTDRDPTAHAEVLAIRQ 60

Query: 61  AAEAIGTERLVDCDLYVTLEPCTMCAGAISFARVRRLYYGAADPKGGAVESGVRFFAQPT 120
           AA A+G+ERL  CDLYVTLEPCTMCAGAISFAR+RRLYYGAADPKGGAVESGVRFFAQPT
Sbjct: 61  AAAALGSERLSGCDLYVTLEPCTMCAGAISFARIRRLYYGAADPKGGAVESGVRFFAQPT 120

Query: 121 CHHVPEVYGAVGESESARLLREFFRERR 148
           CHHVPEVY A+GES SA++LR+FF+ RR
Sbjct: 121 CHHVPEVYSALGESRSAQMLRQFFQARR 148