BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0005.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_530796.1| pseudouridine synthase Rsu [Rhodopseudomonas pa... 429 e-118 ref|YP_779866.1| pseudouridine synthase Rsu [Rhodopseudomonas pa... 417 e-115 ref|ZP_08627371.1| ribosomal large subunit pseudouridine synthas... 415 e-114 ref|YP_578366.1| pseudouridine synthase, Rsu [Nitrobacter hambur... 413 e-113 ref|ZP_07027415.1| RNA-binding S4 domain protein [Afipia sp. 1NL... 408 e-112 >ref|YP_530796.1| pseudouridine synthase Rsu [Rhodopseudomonas palustris BisB18] gb|ABD86477.1| Pseudouridine synthase, Rsu [Rhodopseudomonas palustris BisB18] Length = 743 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 221/259 (85%), Positives = 233/259 (89%), Gaps = 2/259 (0%) Query: 1 MYHKPRGLMTTHADPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGLARTLEH 60 MYHKPRGLMTTHADPEGRPTVFD+LP+GLPRLISIGRLDFNTEGLLLLTNDGGLARTLE Sbjct: 486 MYHKPRGLMTTHADPEGRPTVFDHLPDGLPRLISIGRLDFNTEGLLLLTNDGGLARTLEL 545 Query: 61 PDTGWLRRYRVRAHGEVTQGQLDQLKGGVEVDGVKYGPIDATLERDQSANVWVVFAIREG 120 PDTGWLRRYRVRAHGEVTQGQLD+LK GVEVDGVKYG IDATLERDQ ANVW+VFAIREG Sbjct: 546 PDTGWLRRYRVRAHGEVTQGQLDELKKGVEVDGVKYGSIDATLERDQGANVWLVFAIREG 605 Query: 121 KNREVRNVMAHLGLEVNRLIRISYGPFQLGELEEGKVEEVKTRVLREQLGEKIAKIAGAD 180 KNREVRNV+AHLGLEVNRLIR+SYGPFQLGELEEG+VEEVKTRVLREQLGEKIA +GAD Sbjct: 606 KNREVRNVLAHLGLEVNRLIRVSYGPFQLGELEEGQVEEVKTRVLREQLGEKIAAASGAD 665 Query: 181 FTRP-EQRHAADGDDVPARKPKPSKRETINDRKGRRVLVQRTGSEEARARNEDEASGYGP 239 F R + D D V +KP KR T+ DRKGRRVLVQRTGSEEARARNE EA+GYGP Sbjct: 666 FARQIPSKGDVDLDPVVVKKPV-YKRGTVEDRKGRRVLVQRTGSEEARARNEAEANGYGP 724 Query: 240 PRRPKRGYHGKRDLKPRDE 258 PRRP RGY GKRDLKPRDE Sbjct: 725 PRRPTRGYKGKRDLKPRDE 743 >ref|YP_779866.1| pseudouridine synthase Rsu [Rhodopseudomonas palustris BisA53] gb|ABJ04886.1| Pseudouridine synthase, Rsu [Rhodopseudomonas palustris BisA53] Length = 787 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/259 (82%), Positives = 232/259 (89%), Gaps = 2/259 (0%) Query: 1 MYHKPRGLMTTHADPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGLARTLEH 60 +YHKPRGLMTTHADPEGRPTVFD+LPEGLPRLISIGRLDFNTEGLLLLTNDGGLARTLE Sbjct: 530 LYHKPRGLMTTHADPEGRPTVFDHLPEGLPRLISIGRLDFNTEGLLLLTNDGGLARTLEL 589 Query: 61 PDTGWLRRYRVRAHGEVTQGQLDQLKGGVEVDGVKYGPIDATLERDQSANVWVVFAIREG 120 PDTGWLRRYRVRAHGEVTQ QL++LK GVEVDGVKYGPIDATLERDQ ANVW+VFAIREG Sbjct: 590 PDTGWLRRYRVRAHGEVTQAQLNELKDGVEVDGVKYGPIDATLERDQGANVWLVFAIREG 649 Query: 121 KNREVRNVMAHLGLEVNRLIRISYGPFQLGELEEGKVEEVKTRVLREQLGEKIAKIAGAD 180 KNREVRNV+AHLGLEVNRLIR+SYGPFQLGE+EEG+VEEVKTRVLREQLGEKIA AGA+ Sbjct: 650 KNREVRNVLAHLGLEVNRLIRVSYGPFQLGEIEEGQVEEVKTRVLREQLGEKIALAAGAN 709 Query: 181 FTRP-EQRHAADGDDVPARKPKPSKRETINDRKGRRVLVQRTGSEEARARNEDEASGYGP 239 F R + D D V +KP KR T+ DRKGRRVLVQR+GSEEAR RNE EA+G+GP Sbjct: 710 FARQIPSKGDTDLDPVVVKKPV-LKRSTVEDRKGRRVLVQRSGSEEARERNELEAAGFGP 768 Query: 240 PRRPKRGYHGKRDLKPRDE 258 P+RPKRGY GKRDL PR+E Sbjct: 769 PKRPKRGYKGKRDLAPREE 787 >ref|ZP_08627371.1| ribosomal large subunit pseudouridine synthase B [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09997.1| ribosomal large subunit pseudouridine synthase B [Bradyrhizobiaceae bacterium SG-6C] Length = 709 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 207/261 (79%), Positives = 227/261 (86%), Gaps = 5/261 (1%) Query: 1 MYHKPRGLMTTHADPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGLARTLEH 60 +YHKPRGLMTTH DPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGL+R LEH Sbjct: 446 LYHKPRGLMTTHDDPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGLSRALEH 505 Query: 61 PDTGWLRRYRVRAHGEVTQGQLDQLKGGVEVDGVKYGPIDATLERDQSANVWVVFAIREG 120 PDTGWLRRYRVRAHG+VTQ QLDQLK GVEVDGVKYG I+ATLERD+ +NVW+VFAIREG Sbjct: 506 PDTGWLRRYRVRAHGDVTQAQLDQLKNGVEVDGVKYGSIEATLERDKGSNVWIVFAIREG 565 Query: 121 KNREVRNVMAHLGLEVNRLIRISYGPFQLGELEEGKVEEVKTRVLREQLGEKIAKIAGAD 180 KNREVRNVMAHLGLEVNRLIR+SYGPFQLGE+EEG+VEE+K+RVLREQLGEKI ++GA Sbjct: 566 KNREVRNVMAHLGLEVNRLIRVSYGPFQLGEIEEGQVEEIKSRVLREQLGEKIVAMSGAQ 625 Query: 181 FTRPEQRHAADGDDVPAR----KPKPSKRETINDRKGRRVLVQRTGSEEARARNEDEASG 236 F +P +HAA+ DD P KP +K I DRKGR++LV R GSEEARARNE EA G Sbjct: 626 FDKP-VKHAAEDDDAPRGKGRVKPAGTKNALIADRKGRKILVTRAGSEEARARNEGEAGG 684 Query: 237 YGPPRRPKRGYHGKRDLKPRD 257 Y PRRP RGY GKRDLKPRD Sbjct: 685 YSAPRRPTRGYKGKRDLKPRD 705 >ref|YP_578366.1| pseudouridine synthase, Rsu [Nitrobacter hamburgensis X14] gb|ABE63906.1| Pseudouridine synthase, Rsu [Nitrobacter hamburgensis X14] Length = 687 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/265 (79%), Positives = 227/265 (85%), Gaps = 8/265 (3%) Query: 1 MYHKPRGLMTTHADPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGLARTLEH 60 +YHKPRGLMTTHADPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGLAR LE Sbjct: 423 LYHKPRGLMTTHADPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGLARALEL 482 Query: 61 PDTGWLRRYRVRAHGEVTQGQLDQLKGGVEVDGVKYGPIDATLERDQSANVWVVFAIREG 120 PDTGWLRRYRVRAHGEVTQ QLD LK GVEVDGVKYG IDATLERDQ ANVW+VFAIREG Sbjct: 483 PDTGWLRRYRVRAHGEVTQAQLDALKNGVEVDGVKYGSIDATLERDQGANVWLVFAIREG 542 Query: 121 KNREVRNVMAHLGLEVNRLIRISYGPFQLGELEEGKVEEVKTRVLREQLGEKIAKIAGAD 180 KNREVRNVMAHLGLEVNRLIR+SYGPFQL E+ EG+VEEVKTRVLREQLG+KIA +A A+ Sbjct: 543 KNREVRNVMAHLGLEVNRLIRVSYGPFQLAEIAEGQVEEVKTRVLREQLGDKIAALANAN 602 Query: 181 F------TRPEQRHAADGDDVPARKPKP--SKRETINDRKGRRVLVQRTGSEEARARNED 232 F E + DG + ++K +KR I DRKGR V+VQRTGS+EARARNE Sbjct: 603 FAGTAAEAETEPKLGRDGTPLRSKKDNKARAKRSLIEDRKGRNVVVQRTGSDEARARNEA 662 Query: 233 EASGYGPPRRPKRGYHGKRDLKPRD 257 EA+GYGPPRRPKRGYHGKRDL PRD Sbjct: 663 EANGYGPPRRPKRGYHGKRDLTPRD 687 >ref|ZP_07027415.1| RNA-binding S4 domain protein [Afipia sp. 1NLS2] gb|EFI51171.1| RNA-binding S4 domain protein [Afipia sp. 1NLS2] Length = 695 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/263 (77%), Positives = 226/263 (85%), Gaps = 6/263 (2%) Query: 1 MYHKPRGLMTTHADPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGGLARTLEH 60 +YHKPRGLMTTH DPEGRPTVFD+LPEGLPRLISIGRLDFNTEGLLLLTNDGGL+R LEH Sbjct: 433 LYHKPRGLMTTHDDPEGRPTVFDHLPEGLPRLISIGRLDFNTEGLLLLTNDGGLSRALEH 492 Query: 61 PDTGWLRRYRVRAHGEVTQGQLDQLKGGVEVDGVKYGPIDATLERDQSANVWVVFAIREG 120 PDTGWLRRYRVRAHGEVTQ QLD+LK GVEVDG+KYG IDATLERDQ ANVWV FAIREG Sbjct: 493 PDTGWLRRYRVRAHGEVTQAQLDELKNGVEVDGIKYGSIDATLERDQGANVWVTFAIREG 552 Query: 121 KNREVRNVMAHLGLEVNRLIRISYGPFQLGELEEGKVEEVKTRVLREQLGEKIAKIAGAD 180 KNREVRNVMAHLGLEVNRLIR+SYGPFQLGE+ EG+VEE+K+RVLREQLGEKIA ++GA Sbjct: 553 KNREVRNVMAHLGLEVNRLIRVSYGPFQLGEIPEGQVEEIKSRVLREQLGEKIATMSGAQ 612 Query: 181 FTRP---EQRHAADGDDVPARKP---KPSKRETINDRKGRRVLVQRTGSEEARARNEDEA 234 F +P ++ D P R K KR I DRKGR V+VQR+GS+E RARNE EA Sbjct: 613 FDKPVREDEGPKVGRDGTPLRSKADNKKIKRSKIEDRKGRTVVVQRSGSDEKRARNEAEA 672 Query: 235 SGYGPPRRPKRGYHGKRDLKPRD 257 +GYGPPR+PKRGYHGKRDL P+D Sbjct: 673 NGYGPPRKPKRGYHGKRDLTPKD 695