BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0093.0024.p (509 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203364.1| ABC transporter substrate-binding protein [B... 813 0.0 ref|NP_773739.1| ABC transporter substrate-binding protein [Brad... 812 0.0 ref|YP_001242625.1| putative ABC transporter substrate-binding p... 806 0.0 ref|YP_001769778.1| extracellular solute-binding protein [Methyl... 688 0.0 ref|YP_002945569.1| family 1 extracellular solute-binding protei... 665 0.0 >ref|YP_001203364.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL75127.1| probable ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] Length = 476 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/438 (87%), Positives = 412/438 (94%), Gaps = 1/438 (0%) Query: 72 PALAQGKTITVWWGKGFYKSEDDALLETIKKFEAKTGIKVELSQYAIQDMIPKTVAALDS 131 PA+AQ TIT+WW KGFYKSEDDALL +KKFEAKTGIKVELSQYAIQDMIPKTVAALDS Sbjct: 40 PAVAQD-TITIWWSKGFYKSEDDALLNVVKKFEAKTGIKVELSQYAIQDMIPKTVAALDS 98 Query: 132 GTVPDVAYSDSYDVQAQGKWAYEGKLEDLSDILLPMKDAFAPNTLETALLYNDVAKKKAY 191 GTVPDVAY+D+YDVQAQGKWAYEGKLEDLSDIL PMK AFAPNT+ETA LYN+V KKKAY Sbjct: 99 GTVPDVAYADTYDVQAQGKWAYEGKLEDLSDILEPMKQAFAPNTIETAYLYNNVTKKKAY 158 Query: 192 YGFPLKQQSMHVQIWGDMLEKAGFKAADIPTKWEDYWSFWCDKVQPAVRKATGQRIYGVG 251 YGFPLKQQSMHVQIWGDMLEKAGFK +DIPTKWEDYW+FWCDKVQP +RKATGQRIYGVG Sbjct: 159 YGFPLKQQSMHVQIWGDMLEKAGFKQSDIPTKWEDYWTFWCDKVQPGIRKATGQRIYGVG 218 Query: 252 QPMGVESTDSFQSFYTFMDAYHVKLVDDDGKLLVDDPKVRDGLIHALKDYTDTYIKACSP 311 QPMGVESTDSFQSFYTFMDAY+VKLVDDDGKLLVDDPKVR+GL ALKDYTDTYIK C+P Sbjct: 219 QPMGVESTDSFQSFYTFMDAYNVKLVDDDGKLLVDDPKVREGLTKALKDYTDTYIKGCTP 278 Query: 312 PSSTTWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTNPALTDAQRAAGKQAYEQDII 371 PSSTTWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTNPALT QRAAGK+AYE+DII Sbjct: 279 PSSTTWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTNPALTPEQRAAGKKAYEEDII 338 Query: 372 TASFPKAPDGSTIRYRSDVKTGLIFANARNKAEGKQFIAFLLQEENVRPYIEGALGRWFP 431 TASFP PDG+ I+YRSDVKTGLIF+NA+NKA+ K+FI FL+QEEN+ PY+EGALGRWFP Sbjct: 339 TASFPNKPDGTPIKYRSDVKTGLIFSNAKNKAQAKEFIKFLMQEENLGPYVEGALGRWFP 398 Query: 432 VTKASQASPFWQADRHRKAVYNQFTGGTAPFDFTKNWKFTILNNENVWAKAMNRVVSEKV 491 VT A Q SPFWQADRHRKAVY QFTGGT+PFDFTKN+KFTILNNENVWAKAMNRVVSEKV Sbjct: 399 VTTAGQKSPFWQADRHRKAVYTQFTGGTSPFDFTKNYKFTILNNENVWAKAMNRVVSEKV 458 Query: 492 PVDKAVDELIARIKQVAG 509 PV+KAVDELIARIK+VAG Sbjct: 459 PVEKAVDELIARIKEVAG 476 >ref|NP_773739.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52364.1| blr7099 [Bradyrhizobium japonicum USDA 110] Length = 461 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/434 (88%), Positives = 407/434 (93%) Query: 76 QGKTITVWWGKGFYKSEDDALLETIKKFEAKTGIKVELSQYAIQDMIPKTVAALDSGTVP 135 Q KTITVWWGKGFY+SEDDAL+ETIKKFEAKTGIKVELSQYAIQDMIPKTVAALD+GTVP Sbjct: 28 QQKTITVWWGKGFYRSEDDALIETIKKFEAKTGIKVELSQYAIQDMIPKTVAALDAGTVP 87 Query: 136 DVAYSDSYDVQAQGKWAYEGKLEDLSDILLPMKDAFAPNTLETALLYNDVAKKKAYYGFP 195 DVAYSDSYDVQAQGKWAYEGKLEDL+D++ P+KD F NTL+ ++LYNDV KKKAYYGFP Sbjct: 88 DVAYSDSYDVQAQGKWAYEGKLEDLTDVMEPIKDRFVQNTLDASILYNDVTKKKAYYGFP 147 Query: 196 LKQQSMHVQIWGDMLEKAGFKAADIPTKWEDYWSFWCDKVQPAVRKATGQRIYGVGQPMG 255 LKQQSMHVQIW DMLEKAGFK ADIPT WE YWSFWCDKVQP +RKATGQRIY VGQPMG Sbjct: 148 LKQQSMHVQIWNDMLEKAGFKLADIPTDWEGYWSFWCDKVQPGIRKATGQRIYAVGQPMG 207 Query: 256 VESTDSFQSFYTFMDAYHVKLVDDDGKLLVDDPKVRDGLIHALKDYTDTYIKACSPPSST 315 VESTD+FQSFYTFMDAYHVKLVDDDGKLLVDDPKVR+ LI A+KDYTDTYIK C+PPSST Sbjct: 208 VESTDAFQSFYTFMDAYHVKLVDDDGKLLVDDPKVRENLIKAMKDYTDTYIKGCTPPSST 267 Query: 316 TWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTNPALTDAQRAAGKQAYEQDIITASF 375 TWKDPDNNVAFHNKTIVMTHNFTISIAAKW+EDS N ALT QR AGK+AYEQDI+TASF Sbjct: 268 TWKDPDNNVAFHNKTIVMTHNFTISIAAKWYEDSQNQALTPEQREAGKKAYEQDIVTASF 327 Query: 376 PKAPDGSTIRYRSDVKTGLIFANARNKAEGKQFIAFLLQEENVRPYIEGALGRWFPVTKA 435 PKAPDGSTIRYRSDVKTGL+F A+NKAE KQFI+FLLQE+NVRPYIEGALGRWFPVTK Sbjct: 328 PKAPDGSTIRYRSDVKTGLVFTAAKNKAEAKQFISFLLQEDNVRPYIEGALGRWFPVTKE 387 Query: 436 SQASPFWQADRHRKAVYNQFTGGTAPFDFTKNWKFTILNNENVWAKAMNRVVSEKVPVDK 495 SQASPFWQAD+HRKAVY QFTGGTA FDFTKNWKFTILNNENVWAKAMNRVVSEKVPVDK Sbjct: 388 SQASPFWQADKHRKAVYAQFTGGTAAFDFTKNWKFTILNNENVWAKAMNRVVSEKVPVDK 447 Query: 496 AVDELIARIKQVAG 509 AVDELIARIKQVAG Sbjct: 448 AVDELIARIKQVAG 461 >ref|YP_001242625.1| putative ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38719.1| carbohydrate ABC transporter substrate-binding protein, CUT1 family [Bradyrhizobium sp. BTAi1] Length = 460 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/438 (86%), Positives = 411/438 (93%), Gaps = 1/438 (0%) Query: 72 PALAQGKTITVWWGKGFYKSEDDALLETIKKFEAKTGIKVELSQYAIQDMIPKTVAALDS 131 PA+AQ TIT+WW KGFYKSEDDALL +KKFEAKTGIKVELSQYAIQDMIPKTVAALDS Sbjct: 24 PAIAQ-DTITIWWSKGFYKSEDDALLNVVKKFEAKTGIKVELSQYAIQDMIPKTVAALDS 82 Query: 132 GTVPDVAYSDSYDVQAQGKWAYEGKLEDLSDILLPMKDAFAPNTLETALLYNDVAKKKAY 191 GTVPDVAY+D+YDVQAQGKWAYEGKLEDL+DIL PMK AFAPNT+ETA LYN+V KKKAY Sbjct: 83 GTVPDVAYADTYDVQAQGKWAYEGKLEDLTDILEPMKSAFAPNTIETAYLYNNVTKKKAY 142 Query: 192 YGFPLKQQSMHVQIWGDMLEKAGFKAADIPTKWEDYWSFWCDKVQPAVRKATGQRIYGVG 251 YGFPLKQQSMHVQIWGDMLEKAGFK +DIPTKWEDYW+FWCDKVQP +RKATGQRIYGVG Sbjct: 143 YGFPLKQQSMHVQIWGDMLEKAGFKQSDIPTKWEDYWTFWCDKVQPGIRKATGQRIYGVG 202 Query: 252 QPMGVESTDSFQSFYTFMDAYHVKLVDDDGKLLVDDPKVRDGLIHALKDYTDTYIKACSP 311 QPMGVESTDSFQSFYTFMDAY+VKLVDDDGKLLVDDPKVR+GL+ ALKDYTDTYIK C+P Sbjct: 203 QPMGVESTDSFQSFYTFMDAYNVKLVDDDGKLLVDDPKVREGLVKALKDYTDTYIKGCTP 262 Query: 312 PSSTTWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTNPALTDAQRAAGKQAYEQDII 371 PSSTTWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTN ALT QRAAGK+AYE+DII Sbjct: 263 PSSTTWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTNQALTPEQRAAGKKAYEEDII 322 Query: 372 TASFPKAPDGSTIRYRSDVKTGLIFANARNKAEGKQFIAFLLQEENVRPYIEGALGRWFP 431 TASFP PDG+ I+YRSDVKTGLIF++A+NKA+ K+FI FL+QEEN+ PY+EGALGRWFP Sbjct: 323 TASFPNKPDGTPIKYRSDVKTGLIFSSAKNKAQAKEFIKFLMQEENLGPYVEGALGRWFP 382 Query: 432 VTKASQASPFWQADRHRKAVYNQFTGGTAPFDFTKNWKFTILNNENVWAKAMNRVVSEKV 491 VT A Q SPFWQADRHRKAVY QFTGGT PFDFTKN+KFTILNNENVWAKAMNRVVSEKV Sbjct: 383 VTSAGQKSPFWQADRHRKAVYTQFTGGTTPFDFTKNYKFTILNNENVWAKAMNRVVSEKV 442 Query: 492 PVDKAVDELIARIKQVAG 509 PV+KAVDELIAR+K+VAG Sbjct: 443 PVEKAVDELIARLKEVAG 460 >ref|YP_001769778.1| extracellular solute-binding protein [Methylobacterium sp. 4-46] gb|ACA17344.1| extracellular solute-binding protein family 1 [Methylobacterium sp. 4-46] Length = 458 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/446 (72%), Positives = 378/446 (84%) Query: 64 GGLFAATAPALAQGKTITVWWGKGFYKSEDDALLETIKKFEAKTGIKVELSQYAIQDMIP 123 G A PA+AQ KT+TVW+ KGFY+SEDD+L TIKKFE KTGIKVELSQYAIQDMIP Sbjct: 12 GAWVLAAMPAVAQDKTLTVWFSKGFYRSEDDSLWATIKKFEQKTGIKVELSQYAIQDMIP 71 Query: 124 KTVAALDSGTVPDVAYSDSYDVQAQGKWAYEGKLEDLSDILLPMKDAFAPNTLETALLYN 183 KTVAALDSG+ PDV YSD+Y+ QA GKWA+EGKLEDL+DIL PM FAP T+E LLYN Sbjct: 72 KTVAALDSGSPPDVGYSDTYNNQAAGKWAFEGKLEDLTDILQPMMPRFAPQTVEHVLLYN 131 Query: 184 DVAKKKAYYGFPLKQQSMHVQIWGDMLEKAGFKAADIPTKWEDYWSFWCDKVQPAVRKAT 243 D +KAY+GFPLK+Q++H +IWGDM+EKAGFK +DIPT W +YWSFWCDKVQPA RKA+ Sbjct: 132 DQIHRKAYFGFPLKRQTLHTEIWGDMIEKAGFKQSDIPTSWAEYWSFWCDKVQPAYRKAS 191 Query: 244 GQRIYGVGQPMGVESTDSFQSFYTFMDAYHVKLVDDDGKLLVDDPKVRDGLIHALKDYTD 303 G R YG+G PMGVESTDSFQSFY FMDAY V+LVD DGKLLVDDPK RDGLI ALKDYTD Sbjct: 192 GSRTYGIGAPMGVESTDSFQSFYAFMDAYDVRLVDSDGKLLVDDPKARDGLIKALKDYTD 251 Query: 304 TYIKACSPPSSTTWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTNPALTDAQRAAGK 363 Y+K C PPS+TTWKDPDNNVAFHN+T VMTHNFTISIAAKW+EDS NP+ TD QRAA K Sbjct: 252 PYVKGCVPPSATTWKDPDNNVAFHNRTTVMTHNFTISIAAKWYEDSLNPSATDEQRAAAK 311 Query: 364 QAYEQDIITASFPKAPDGSTIRYRSDVKTGLIFANARNKAEGKQFIAFLLQEENVRPYIE 423 +AYE+ IITA FP PDG + YR+DVK G++FA A+NKA K+F+ F+++E+N+RPY+E Sbjct: 312 KAYEETIITAPFPNRPDGKPMTYRADVKHGVVFAGAKNKAAAKEFVKFIMEEDNLRPYVE 371 Query: 424 GALGRWFPVTKASQASPFWQADRHRKAVYNQFTGGTAPFDFTKNWKFTILNNENVWAKAM 483 GALGRWFPVT AS S FWQAD+HRKAVYNQF GT PFD+ KN+KFT++NNENV+AKAM Sbjct: 372 GALGRWFPVTNASIESTFWQADKHRKAVYNQFKSGTEPFDYVKNYKFTLINNENVFAKAM 431 Query: 484 NRVVSEKVPVDKAVDELIARIKQVAG 509 NRVVSEKVPV+KA DE++ARI+QVA Sbjct: 432 NRVVSEKVPVEKAADEMLARIRQVAA 457 >ref|YP_002945569.1| family 1 extracellular solute-binding protein [Variovorax paradoxus S110] gb|ACS20303.1| extracellular solute-binding protein family 1 [Variovorax paradoxus S110] Length = 461 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/448 (69%), Positives = 366/448 (81%), Gaps = 2/448 (0%) Query: 63 AGGLFAATAPALAQGKTITVWWGKGFYKSEDDALLETIKKFEAKT-GIKVELSQYAIQDM 121 A GL A+ PA AQ K +TVWW KGFYK+EDDAL IKKFE K +K+ELSQY IQDM Sbjct: 14 ALGLLASAGPAAAQEK-LTVWWVKGFYKAEDDALFAAIKKFEDKNKDVKIELSQYPIQDM 72 Query: 122 IPKTVAALDSGTVPDVAYSDSYDVQAQGKWAYEGKLEDLSDILLPMKDAFAPNTLETALL 181 IPKTV+ALDSG+ PDVAY+D YD Q GKWAY+GKLED+ +L PMKD FAPNTLETA L Sbjct: 73 IPKTVSALDSGSPPDVAYADVYDFQVTGKWAYDGKLEDIGSVLAPMKDRFAPNTLETAFL 132 Query: 182 YNDVAKKKAYYGFPLKQQSMHVQIWGDMLEKAGFKAADIPTKWEDYWSFWCDKVQPAVRK 241 YND KKKAYY FP+KQQ+MH++ W DML +AGFK +DIPT W+DYWSFWC+KVQ RK Sbjct: 133 YNDQTKKKAYYAFPIKQQTMHIEYWNDMLNEAGFKESDIPTAWKDYWSFWCEKVQSGSRK 192 Query: 242 ATGQRIYGVGQPMGVESTDSFQSFYTFMDAYHVKLVDDDGKLLVDDPKVRDGLIHALKDY 301 TG+R +G+G PMGV+S+DSF SF TFMDAY+VKLV D GKLLVDDPKVR GLI AL DY Sbjct: 193 QTGKRTFGIGMPMGVDSSDSFYSFLTFMDAYNVKLVADSGKLLVDDPKVRAGLISALTDY 252 Query: 302 TDTYIKACSPPSSTTWKDPDNNVAFHNKTIVMTHNFTISIAAKWFEDSTNPALTDAQRAA 361 T Y K C+PPSST+WKDPDNNVAFHNKT VMTHN TISIAAKW +DS N +LT QR Sbjct: 253 TTPYTKGCTPPSSTSWKDPDNNVAFHNKTTVMTHNATISIAAKWLDDSNNASLTPEQREE 312 Query: 362 GKQAYEQDIITASFPKAPDGSTIRYRSDVKTGLIFANARNKAEGKQFIAFLLQEENVRPY 421 ++ Y + I TA FP PDGS + YRS VKTG++F +A+NKA K+F+AFL+QEEN+ PY Sbjct: 313 ARKNYTERIHTAGFPNKPDGSKMVYRSAVKTGVVFKDAKNKARAKEFVAFLMQEENLTPY 372 Query: 422 IEGALGRWFPVTKASQASPFWQADRHRKAVYNQFTGGTAPFDFTKNWKFTILNNENVWAK 481 +EG+LGRWFPVTKA+QASPFW+ADRHR +V+NQ+ GT F+FTKN+KFT+LNNENVWAK Sbjct: 373 VEGSLGRWFPVTKAAQASPFWKADRHRLSVFNQYAAGTVTFEFTKNYKFTVLNNENVWAK 432 Query: 482 AMNRVVSEKVPVDKAVDELIARIKQVAG 509 AM+RVV++KVPVDKAVDELIARIK VA Sbjct: 433 AMSRVVTDKVPVDKAVDELIARIKTVAA 460