BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0093.0023.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773740.1| ABC transporter permease [Bradyrhizobium japoni... 489 e-136 ref|YP_001203363.1| ABC transporter permease [Bradyrhizobium sp.... 489 e-136 ref|YP_001242626.1| putative ABC transporter permease [Bradyrhiz... 483 e-134 ref|YP_001769777.1| binding-protein-dependent transport systems ... 436 e-120 ref|YP_002945568.1| binding-protein-dependent transport systems ... 409 e-112 >ref|NP_773740.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110] dbj|BAC52365.1| blr7100 [Bradyrhizobium japonicum USDA 110] Length = 290 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/261 (91%), Positives = 254/261 (97%) Query: 2 LLAPYLLVFLAFVVYPVGYGLWLARHPASYVALYHDPIFARAAINTLIFLVIGINIKMLI 61 LLAPYLLVFLAFVVYPV YGLWLAR PA+YVALY+DPIFARAA+NTLIFLVIGINIKMLI Sbjct: 30 LLAPYLLVFLAFVVYPVCYGLWLARAPANYVALYNDPIFARAAVNTLIFLVIGINIKMLI 89 Query: 62 ALFLSGFFAQQRPWIRWLSVIFILPWAVPSIPTILSVRFMLNPEWGVVNQLIFKFTGDDG 121 ALFLSGFFAQQR WI+WLSVIFILPWAVPSIPTILSVRFMLNPEWGV+N LIF FTGDDG Sbjct: 90 ALFLSGFFAQQRTWIKWLSVIFILPWAVPSIPTILSVRFMLNPEWGVINHLIFSFTGDDG 149 Query: 122 PNWLNDPSVALAMAIGVHIWKSLPFWTLILLTGRLAISHDLYEASDVDGANWWQKFRYIT 181 PNWLNDP+VAL MAIGVHIWKSLPFWTLIL+TGRLAI HDL+EA++VDGA+WWQKFR+IT Sbjct: 150 PNWLNDPTVALTMAIGVHIWKSLPFWTLILITGRLAIPHDLFEAAEVDGASWWQKFRFIT 209 Query: 182 WPSMQTLYVTCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMAS 241 WPSMQTLY+TCTLLSMIWTLGDFNSVYLLTGGGPADLTHVL+TLGIRYLRLDQLSLAMAS Sbjct: 210 WPSMQTLYITCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLATLGIRYLRLDQLSLAMAS 269 Query: 242 IVCAMPFVLPLVYFMMKRLSR 262 IVCAMPFVLPLVYFMMKRLSR Sbjct: 270 IVCAMPFVLPLVYFMMKRLSR 290 >ref|YP_001203363.1| ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL75126.1| probable ABC transporter permease protein [Bradyrhizobium sp. ORS 278] Length = 291 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/262 (91%), Positives = 255/262 (97%) Query: 1 VLLAPYLLVFLAFVVYPVGYGLWLARHPASYVALYHDPIFARAAINTLIFLVIGINIKML 60 V+LAPYLLVFLAFVVYPVGYGLWLAR PASYVAL++DPIFARAA+NTLIFL++GIN+KML Sbjct: 30 VMLAPYLLVFLAFVVYPVGYGLWLARDPASYVALFNDPIFARAAVNTLIFLLVGINLKML 89 Query: 61 IALFLSGFFAQQRPWIRWLSVIFILPWAVPSIPTILSVRFMLNPEWGVVNQLIFKFTGDD 120 IALFLSGFF QQR WI+WLSVIFILPWAVPSIPTILSVRFMLNPEWGVVNQLIFKFTG+D Sbjct: 90 IALFLSGFFVQQRGWIKWLSVIFILPWAVPSIPTILSVRFMLNPEWGVVNQLIFKFTGED 149 Query: 121 GPNWLNDPSVALAMAIGVHIWKSLPFWTLILLTGRLAISHDLYEASDVDGANWWQKFRYI 180 GPNWLNDP+VALAMAIG+HIWKSLPFWTLIL+TGRLAIS DL+EA++VDGA W QKFRYI Sbjct: 150 GPNWLNDPTVALAMAIGMHIWKSLPFWTLILMTGRLAISQDLFEAAEVDGATWMQKFRYI 209 Query: 181 TWPSMQTLYVTCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMA 240 TWPSMQTLY+TCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMA Sbjct: 210 TWPSMQTLYITCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMA 269 Query: 241 SIVCAMPFVLPLVYFMMKRLSR 262 SIVCAMP VLPLVYFMMKRLSR Sbjct: 270 SIVCAMPLVLPLVYFMMKRLSR 291 >ref|YP_001242626.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ38720.1| carbohydrate ABC transporter membrane protein 1, CUT1 family [Bradyrhizobium sp. BTAi1] Length = 291 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 232/262 (88%), Positives = 253/262 (96%) Query: 1 VLLAPYLLVFLAFVVYPVGYGLWLARHPASYVALYHDPIFARAAINTLIFLVIGINIKML 60 V+LAPYLL+F+AFVVYPVGYGLWLAR PASYVAL++DPIFARAA+NTLIFL++GIN+KM+ Sbjct: 30 VMLAPYLLIFIAFVVYPVGYGLWLARDPASYVALFNDPIFARAAVNTLIFLLVGINLKMV 89 Query: 61 IALFLSGFFAQQRPWIRWLSVIFILPWAVPSIPTILSVRFMLNPEWGVVNQLIFKFTGDD 120 IALFLSGFF QQR WI+WLSVIFILPWAVPSIPTILSVRFMLNPEWG+VN LIF TGDD Sbjct: 90 IALFLSGFFIQQRGWIKWLSVIFILPWAVPSIPTILSVRFMLNPEWGMVNHLIFNLTGDD 149 Query: 121 GPNWLNDPSVALAMAIGVHIWKSLPFWTLILLTGRLAISHDLYEASDVDGANWWQKFRYI 180 GPNWLNDP++AL+MAIG+HIWKSLPFWTLIL+TGRLAIS DL+EA++VDGA WWQKFRYI Sbjct: 150 GPNWLNDPTIALSMAIGMHIWKSLPFWTLILITGRLAISQDLFEAAEVDGATWWQKFRYI 209 Query: 181 TWPSMQTLYVTCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMA 240 TWPSMQTLY+TCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMA Sbjct: 210 TWPSMQTLYITCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMA 269 Query: 241 SIVCAMPFVLPLVYFMMKRLSR 262 SIVCAMP VLPLVYFMMKRLSR Sbjct: 270 SIVCAMPLVLPLVYFMMKRLSR 291 >ref|YP_001769777.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] gb|ACA17343.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] Length = 293 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/262 (78%), Positives = 236/262 (90%) Query: 1 VLLAPYLLVFLAFVVYPVGYGLWLARHPASYVALYHDPIFARAAINTLIFLVIGINIKML 60 +L+APYLLVFL FV+YP+GYGLWLAR PASY L DPIFARA +NTLIFL++GIN+KM Sbjct: 32 ILIAPYLLVFLLFVIYPIGYGLWLARSPASYAHLAADPIFARAVVNTLIFLIVGINVKMA 91 Query: 61 IALFLSGFFAQQRPWIRWLSVIFILPWAVPSIPTILSVRFMLNPEWGVVNQLIFKFTGDD 120 IALFLSGFF +R WIRWLSV+FILPWAVPSIPTILS+RFMLNPEWG+VNQ IF+FTG+D Sbjct: 92 IALFLSGFFTHERLWIRWLSVLFILPWAVPSIPTILSIRFMLNPEWGIVNQTIFRFTGED 151 Query: 121 GPNWLNDPSVALAMAIGVHIWKSLPFWTLILLTGRLAISHDLYEASDVDGANWWQKFRYI 180 GPNWLNDP + L +AI VHIWKSLPFWTLILL GRLAIS DLYEA+ VDGA WQKF ++ Sbjct: 152 GPNWLNDPGLGLTLAIAVHIWKSLPFWTLILLAGRLAISSDLYEAASVDGATSWQKFLHV 211 Query: 181 TWPSMQTLYVTCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMA 240 TWPSM+ LYVTCT+LSMIWTLGDFNS+YLLTGGGPADLTHVL+TLGIRYLRLDQ+ +MA Sbjct: 212 TWPSMRALYVTCTILSMIWTLGDFNSIYLLTGGGPADLTHVLATLGIRYLRLDQIDHSMA 271 Query: 241 SIVCAMPFVLPLVYFMMKRLSR 262 ++VCAMPFVLPLVY +M+RLS+ Sbjct: 272 AVVCAMPFVLPLVYVLMRRLSK 293 >ref|YP_002945568.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS20302.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 291 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/262 (75%), Positives = 229/262 (87%) Query: 1 VLLAPYLLVFLAFVVYPVGYGLWLARHPASYVALYHDPIFARAAINTLIFLVIGINIKML 60 V++ PYLLVF+ FV+YPVGYGLWLARHP SYV L DPIF R+ INT IFLV+ INIKML Sbjct: 30 VMVVPYLLVFVVFVLYPVGYGLWLARHPQSYVKLVEDPIFFRSVINTAIFLVVAINIKML 89 Query: 61 IALFLSGFFAQQRPWIRWLSVIFILPWAVPSIPTILSVRFMLNPEWGVVNQLIFKFTGDD 120 +AL LSGFF R WI+ +S IFILPWA+PSIPTILSVRFMLNPEWGV+N IF+ TG D Sbjct: 90 VALVLSGFFVTSRWWIKIVSAIFILPWAMPSIPTILSVRFMLNPEWGVINSTIFRLTGAD 149 Query: 121 GPNWLNDPSVALAMAIGVHIWKSLPFWTLILLTGRLAISHDLYEASDVDGANWWQKFRYI 180 GPNWLNDPS+ALA+A+ VH+WKSLPFWTLIL+ GRLAI + YEA+ VDGA+ WQKFR++ Sbjct: 150 GPNWLNDPSLALALAMVVHVWKSLPFWTLILVAGRLAIPAEQYEAASVDGASTWQKFRFV 209 Query: 181 TWPSMQTLYVTCTLLSMIWTLGDFNSVYLLTGGGPADLTHVLSTLGIRYLRLDQLSLAMA 240 +WP+++TLYVT +LSMIWTLGDFNSVYLLTGGGPADLTHVL+TLGIRYLRLDQ+ L+MA Sbjct: 210 SWPALKTLYVTSLILSMIWTLGDFNSVYLLTGGGPADLTHVLATLGIRYLRLDQVDLSMA 269 Query: 241 SIVCAMPFVLPLVYFMMKRLSR 262 SIV A+P VLPLVYFMMKRLS+ Sbjct: 270 SIVVALPLVLPLVYFMMKRLSK 291