BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0093.0021.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242629.1| putrescine ABC transporter membrane protein ... 449 e-124 ref|NP_773743.1| ABC transporter permease protein [Bradyrhizobiu... 439 e-121 ref|YP_001203360.1| putrescine ABC transporter membrane protein ... 439 e-121 ref|YP_317622.1| binding-protein dependent transport system inne... 432 e-119 ref|YP_576531.1| binding-protein-dependent transport systems inn... 423 e-116 >ref|YP_001242629.1| putrescine ABC transporter membrane protein [Bradyrhizobium sp. BTAi1] gb|ABQ38723.1| putrescine transport protein (ABC superfamily, membrane) [Bradyrhizobium sp. BTAi1] Length = 274 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 230/266 (86%), Positives = 247/266 (92%) Query: 6 TRLTRFNMTSLALGLAFLYLPIVILVIYSFNASRLVTVWGGWSLRWYREFFGDRAMLEAA 65 +RL+RFN+ SL LGLAFLYLPI+ILVIYSFNASRLVTVWGGWSLRWY EFF DRAM++AA Sbjct: 9 SRLSRFNVASLTLGLAFLYLPILILVIYSFNASRLVTVWGGWSLRWYHEFFNDRAMIDAA 68 Query: 66 WMSLSVAAVSATLATLLGTLAAVGLARGERFRGRALFSGMLYSPLVMPEVISGLSLLLLF 125 WMSL V A SAT AT+LGTLAAV L+RG+ FRGR LFSGMLY+PLVMPEVI+GLSLLLLF Sbjct: 69 WMSLRVGATSATAATVLGTLAAVALSRGQGFRGRMLFSGMLYAPLVMPEVITGLSLLLLF 128 Query: 126 VALNAERGFWTVTIAHTTLTMCFVTVVVQSRLSTLDRSLEEAAMDLGCDPVRAFLLVTLP 185 VAL AERGFWTVTIAHTTLTMCFV VVVQSRL +LDRSLEEAAMDLGCDP+RAF+LVTLP Sbjct: 129 VALEAERGFWTVTIAHTTLTMCFVAVVVQSRLVSLDRSLEEAAMDLGCDPLRAFVLVTLP 188 Query: 186 LIVPAIVAGWMLAFTLSLDDVVIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTLVIA 245 LI PA+VAGWMLAFTLSLDD+VIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTLVI Sbjct: 189 LIAPAVVAGWMLAFTLSLDDLVIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTLVIG 248 Query: 246 LIAAIIVVASFASKLSSARGESAAPL 271 LIA +IVVAS ASKLSS RGESAAPL Sbjct: 249 LIAVVIVVASLASKLSSDRGESAAPL 274 >ref|NP_773743.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52368.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 270 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/269 (86%), Positives = 251/269 (93%) Query: 3 RTVTRLTRFNMTSLALGLAFLYLPIVILVIYSFNASRLVTVWGGWSLRWYREFFGDRAML 62 R V+RL+RFN+ SLALGLAFLYLPI+ILVIYSFNASRLVTVWGGWSLRWY EFF DRAM+ Sbjct: 2 RKVSRLSRFNIASLALGLAFLYLPILILVIYSFNASRLVTVWGGWSLRWYHEFFNDRAMI 61 Query: 63 EAAWMSLSVAAVSATLATLLGTLAAVGLARGERFRGRALFSGMLYSPLVMPEVISGLSLL 122 EAAWMSL VA SA++ATLLGTLAAV L+RGERFRGR LFSGMLY+PLVMPEVI+GLSLL Sbjct: 62 EAAWMSLRVAVSSASIATLLGTLAAVALSRGERFRGRTLFSGMLYAPLVMPEVITGLSLL 121 Query: 123 LLFVALNAERGFWTVTIAHTTLTMCFVTVVVQSRLSTLDRSLEEAAMDLGCDPVRAFLLV 182 LLFVALNAERGFWTVTIAHTTLTMCFV VVVQSRL +LDRSLEEAAMDLGC+PV AF V Sbjct: 122 LLFVALNAERGFWTVTIAHTTLTMCFVAVVVQSRLGSLDRSLEEAAMDLGCNPVCAFAAV 181 Query: 183 TLPLIVPAIVAGWMLAFTLSLDDVVIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTL 242 TLPLI PAIVAGWMLAFTLSLDD+VIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTL Sbjct: 182 TLPLIAPAIVAGWMLAFTLSLDDLVIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTL 241 Query: 243 VIALIAAIIVVASFASKLSSARGESAAPL 271 VI LIA +IV+AS ASKLSS++GESAAPL Sbjct: 242 VIGLIAVVIVIASLASKLSSSQGESAAPL 270 >ref|YP_001203360.1| putrescine ABC transporter membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL75123.1| putrescine transport protein (ABC superfamily, membrane) [Bradyrhizobium sp. ORS 278] Length = 270 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/266 (86%), Positives = 248/266 (93%) Query: 6 TRLTRFNMTSLALGLAFLYLPIVILVIYSFNASRLVTVWGGWSLRWYREFFGDRAMLEAA 65 +RL+RFN+ SL LGLAFLYLPI+ILVIYSFNASRLVTVWGGWSLRWY EFF DRAM++AA Sbjct: 5 SRLSRFNVASLTLGLAFLYLPILILVIYSFNASRLVTVWGGWSLRWYHEFFNDRAMIDAA 64 Query: 66 WMSLSVAAVSATLATLLGTLAAVGLARGERFRGRALFSGMLYSPLVMPEVISGLSLLLLF 125 WMSL V A SATLAT+LGTLAAV L+RG+ FRGR LFSGMLY+PLVMPEVI+GLSLLLLF Sbjct: 65 WMSLGVGATSATLATVLGTLAAVALSRGQAFRGRILFSGMLYAPLVMPEVITGLSLLLLF 124 Query: 126 VALNAERGFWTVTIAHTTLTMCFVTVVVQSRLSTLDRSLEEAAMDLGCDPVRAFLLVTLP 185 VAL+AERGFWTVTIAHTTLTMCFV VVVQSRL +LDRSLEEAAMDLGCDP RAF++VTLP Sbjct: 125 VALSAERGFWTVTIAHTTLTMCFVAVVVQSRLVSLDRSLEEAAMDLGCDPFRAFVMVTLP 184 Query: 186 LIVPAIVAGWMLAFTLSLDDVVIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTLVIA 245 LI PA+VAGWMLAFTLSLDD+VIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTLVI Sbjct: 185 LIAPAVVAGWMLAFTLSLDDLVIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTLVIG 244 Query: 246 LIAAIIVVASFASKLSSARGESAAPL 271 LIA +IVVAS ASKLSS RGESAAPL Sbjct: 245 LIAVVIVVASLASKLSSDRGESAAPL 270 >ref|YP_317622.1| binding-protein dependent transport system inner membrane protein [Nitrobacter winogradskyi Nb-255] gb|ABA04270.1| Binding-protein-dependent transport systems inner membrane component [Nitrobacter winogradskyi Nb-255] Length = 273 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 221/272 (81%), Positives = 242/272 (88%), Gaps = 1/272 (0%) Query: 1 MAR-TVTRLTRFNMTSLALGLAFLYLPIVILVIYSFNASRLVTVWGGWSLRWYREFFGDR 59 MAR + RL+ FN+TSLALGLAFLYLPIVILVIYSFNASRLVTVWGGWSLRWY EFF D Sbjct: 2 MARPALARLSPFNITSLALGLAFLYLPIVILVIYSFNASRLVTVWGGWSLRWYVEFFNDE 61 Query: 60 AMLEAAWMSLSVAAVSATLATLLGTLAAVGLARGERFRGRALFSGMLYSPLVMPEVISGL 119 AML A MSL VAA+SAT AT+LGTLAAV L R F GR LFSGMLY+PLVMPEVI+GL Sbjct: 62 AMLSALAMSLRVAAMSATAATILGTLAAVALTRAGSFHGRTLFSGMLYAPLVMPEVITGL 121 Query: 120 SLLLLFVALNAERGFWTVTIAHTTLTMCFVTVVVQSRLSTLDRSLEEAAMDLGCDPVRAF 179 SLLLLFVA++A+RGFWTVTIAHTTLTMCFVTVVVQSRL +LDRSLEEAAMDLGCDP AF Sbjct: 122 SLLLLFVAVDAQRGFWTVTIAHTTLTMCFVTVVVQSRLGSLDRSLEEAAMDLGCDPFWAF 181 Query: 180 LLVTLPLIVPAIVAGWMLAFTLSLDDVVIASFTTGPGSATLPIRIYSEVRLGVKPEINAI 239 + VTLPLI+P++VAGWMLAFTLS+DDVVIASFTTGPGS TLPIRIYSEVRLGVKPEINAI Sbjct: 182 VKVTLPLILPSVVAGWMLAFTLSMDDVVIASFTTGPGSTTLPIRIYSEVRLGVKPEINAI 241 Query: 240 CTLVIALIAAIIVVASFASKLSSARGESAAPL 271 CTL++ IA +IVVAS SKLSS +GE+AAPL Sbjct: 242 CTLIVGSIAVVIVVASLVSKLSSRQGENAAPL 273 >ref|YP_576531.1| binding-protein-dependent transport systems inner membrane component [Nitrobacter hamburgensis X14] gb|ABE62071.1| binding-protein-dependent transport systems inner membrane component [Nitrobacter hamburgensis X14] Length = 272 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/265 (82%), Positives = 240/265 (90%) Query: 7 RLTRFNMTSLALGLAFLYLPIVILVIYSFNASRLVTVWGGWSLRWYREFFGDRAMLEAAW 66 RL+ FN+TSLALGLAFLYLPIV+LVIYSFNASRLVTVWGGWSLRWY EFF D AML AA Sbjct: 8 RLSPFNVTSLALGLAFLYLPIVVLVIYSFNASRLVTVWGGWSLRWYFEFFNDAAMLSAAA 67 Query: 67 MSLSVAAVSATLATLLGTLAAVGLARGERFRGRALFSGMLYSPLVMPEVISGLSLLLLFV 126 MSL V AVSAT AT+LGT AAV L R + FRGR LFSGMLY+PLVMPEVI+GLSLLLLFV Sbjct: 68 MSLRVGAVSATAATILGTFAAVALTRADNFRGRTLFSGMLYAPLVMPEVITGLSLLLLFV 127 Query: 127 ALNAERGFWTVTIAHTTLTMCFVTVVVQSRLSTLDRSLEEAAMDLGCDPVRAFLLVTLPL 186 A++AERGFWTVTIAHTTLTMCFV VVVQSRL +LDRSLEEAAMDLGCDP+RAF+ VTLPL Sbjct: 128 AVDAERGFWTVTIAHTTLTMCFVAVVVQSRLGSLDRSLEEAAMDLGCDPLRAFVKVTLPL 187 Query: 187 IVPAIVAGWMLAFTLSLDDVVIASFTTGPGSATLPIRIYSEVRLGVKPEINAICTLVIAL 246 I+P+I AGWMLAFTLSLDD+VIASFTTGPGS TLPIRIYSEVRLGVKPE+NAICTL+I L Sbjct: 188 ILPSIAAGWMLAFTLSLDDLVIASFTTGPGSTTLPIRIYSEVRLGVKPEVNAICTLIIGL 247 Query: 247 IAAIIVVASFASKLSSARGESAAPL 271 +A +I+ AS ASKLSS +GESAAPL Sbjct: 248 LAVVIIAASLASKLSSRQGESAAPL 272