BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0093.0020.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242630.1| putrescine ABC transporter membrane protein ... 489 e-136 ref|NP_773744.1| ABC transporter permease protein [Bradyrhizobiu... 487 e-135 ref|ZP_08627296.1| putrescine transport system permease protein ... 478 e-133 ref|YP_001203359.1| putrescine ABC transporter membrane protein ... 471 e-131 ref|YP_533798.1| binding-protein-dependent transport systems inn... 461 e-128 >ref|YP_001242630.1| putrescine ABC transporter membrane protein [Bradyrhizobium sp. BTAi1] gb|ABQ38724.1| putrescine transport protein (ABC superfamily, membrane) [Bradyrhizobium sp. BTAi1] Length = 304 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 250/304 (82%), Positives = 276/304 (90%) Query: 1 MSARRIFARPARLAAIAPYLWMVLFFLVPFGFVLKISLSQTAIAQPPYTPVFDFTAGRAA 60 MSARRIF+RPAR AIAPY+WMVLFFLVPF FV KISLSQTAIAQPPYTPVF G +A Sbjct: 1 MSARRIFSRPARFGAIAPYVWMVLFFLVPFAFVAKISLSQTAIAQPPYTPVFSLAGGLSA 60 Query: 61 LAAAFAQLSFDNFRLLLQDNLYILSYLRSLVVAVSSTLILLLIGYPIAYGMARLPQRWQG 120 L+ A A LS DNFRLLL D+LY+ SYLRS+VVA +ST ILLLIGYPIAYGMARLP+RWQG Sbjct: 61 LSDALAGLSLDNFRLLLSDDLYLASYLRSVVVAATSTAILLLIGYPIAYGMARLPKRWQG 120 Query: 121 VAMMLVIVPFWTSFLIRIYAWINILQHDGLLNQMLLALHIVSAPVVWLSTDSAMYLGIVY 180 VAMMLVIVPFWTSFLIRIYAW+NILQHDGLLNQ+LLALH+VSAPVVWLSTDSAMY+GIVY Sbjct: 121 VAMMLVIVPFWTSFLIRIYAWVNILQHDGLLNQILLALHLVSAPVVWLSTDSAMYVGIVY 180 Query: 181 SYLPFMILPLYATLSRMDASLLEAAGDLGASPLQAFWLVTFPLSLPGVGAGALLCFIPVV 240 SYLPFMILPL+ATL++++ +L EAA DLGASP + FWLVTFPLSLPGVGAG+LLCFIP+V Sbjct: 181 SYLPFMILPLFATLTKLEPALEEAAADLGASPRETFWLVTFPLSLPGVGAGSLLCFIPIV 240 Query: 241 GEFVIPDLLAGSNSLMIGQTLWLEFFTNKDWPVASAAAVALLLLLVPPLVLYDRLQRRQL 300 GEFVIPDLLAGS SLMIGQTLWLEFFTNKDWPVAS+ AV LL +L+ PL+LYDRLQRRQL Sbjct: 241 GEFVIPDLLAGSRSLMIGQTLWLEFFTNKDWPVASSIAVVLLAVLLIPLLLYDRLQRRQL 300 Query: 301 EAGR 304 E GR Sbjct: 301 EEGR 304 >ref|NP_773744.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52369.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 304 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 247/304 (81%), Positives = 275/304 (90%) Query: 1 MSARRIFARPARLAAIAPYLWMVLFFLVPFGFVLKISLSQTAIAQPPYTPVFDFTAGRAA 60 MS RRIFARPAR AAIAPY+WMVL FLVPF FVLKISLSQTAIAQPPY PVFD AG + Sbjct: 1 MSGRRIFARPARFAAIAPYVWMVLLFLVPFAFVLKISLSQTAIAQPPYEPVFDLAAGWES 60 Query: 61 LAAAFAQLSFDNFRLLLQDNLYILSYLRSLVVAVSSTLILLLIGYPIAYGMARLPQRWQG 120 L AAFA LS DNFRLL D++Y+ +Y+RSL VAV++T +LLLIGYPIAYGMARLP+RWQ Sbjct: 61 LKAAFAALSLDNFRLLGSDDIYVYAYVRSLTVAVTATALLLLIGYPIAYGMARLPKRWQA 120 Query: 121 VAMMLVIVPFWTSFLIRIYAWINILQHDGLLNQMLLALHIVSAPVVWLSTDSAMYLGIVY 180 VAM+LVIVPFWTSFLIRIYAWINILQHDGLLNQ+LLALH+VS PVVWLSTD+AMY+GIVY Sbjct: 121 VAMVLVIVPFWTSFLIRIYAWINILQHDGLLNQILLALHLVSQPVVWLSTDTAMYIGIVY 180 Query: 181 SYLPFMILPLYATLSRMDASLLEAAGDLGASPLQAFWLVTFPLSLPGVGAGALLCFIPVV 240 SYLPFMILPLYATL++M+ +L EAA DLGA P Q FWLVTFPLSLPGVGAG LLCFIP+V Sbjct: 181 SYLPFMILPLYATLAKMEPALEEAASDLGAPPWQVFWLVTFPLSLPGVGAGVLLCFIPIV 240 Query: 241 GEFVIPDLLAGSNSLMIGQTLWLEFFTNKDWPVASAAAVALLLLLVPPLVLYDRLQRRQL 300 GEFVIPDLLAGSNSLMIGQTLWLEFFTNKDWPVASAAA+ LL++L+ PL+LY+RLQ+RQL Sbjct: 241 GEFVIPDLLAGSNSLMIGQTLWLEFFTNKDWPVASAAAIVLLVVLLVPLLLYERLQKRQL 300 Query: 301 EAGR 304 E GR Sbjct: 301 EQGR 304 >ref|ZP_08627296.1| putrescine transport system permease protein PotH [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09922.1| putrescine transport system permease protein PotH [Bradyrhizobiaceae bacterium SG-6C] Length = 303 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 243/302 (80%), Positives = 271/302 (89%) Query: 1 MSARRIFARPARLAAIAPYLWMVLFFLVPFGFVLKISLSQTAIAQPPYTPVFDFTAGRAA 60 MS RRIF RPARLAA+APYLWMVLFFLVPFGFVLKI+LSQTAIAQPPY PVFD AG Sbjct: 1 MSGRRIFTRPARLAALAPYLWMVLFFLVPFGFVLKIALSQTAIAQPPYVPVFDLAAGWDK 60 Query: 61 LAAAFAQLSFDNFRLLLQDNLYILSYLRSLVVAVSSTLILLLIGYPIAYGMARLPQRWQG 120 AA + LS DNFRLL+ D+LYILSY+RSLVVA++ST ILL+IGYP+AYGMARLPQRWQ Sbjct: 61 FTAALSALSPDNFRLLMSDDLYILSYVRSLVVALTSTAILLVIGYPVAYGMARLPQRWQP 120 Query: 121 VAMMLVIVPFWTSFLIRIYAWINILQHDGLLNQMLLALHIVSAPVVWLSTDSAMYLGIVY 180 VAMMLVIVPFWTSFLIRIYAWIN+LQHDGLLN++LLAL I+ P+ WLSTDSAMYLGIVY Sbjct: 121 VAMMLVIVPFWTSFLIRIYAWINVLQHDGLLNKVLLALGIIGKPMAWLSTDSAMYLGIVY 180 Query: 181 SYLPFMILPLYATLSRMDASLLEAAGDLGASPLQAFWLVTFPLSLPGVGAGALLCFIPVV 240 SY PFMILPLYATLS+MD +LLEAA DLGAS L+AFWLVTFPLSLPGVGAG LLCFIP+V Sbjct: 181 SYFPFMILPLYATLSKMDDALLEAASDLGASRLKAFWLVTFPLSLPGVGAGLLLCFIPIV 240 Query: 241 GEFVIPDLLAGSNSLMIGQTLWLEFFTNKDWPVASAAAVALLLLLVPPLVLYDRLQRRQL 300 GEFVIPDLLAGS+ +MIGQTLWLEFFTNKDWPVASA A+ LL +L+ PL++Y++LQRR L Sbjct: 241 GEFVIPDLLAGSDRMMIGQTLWLEFFTNKDWPVASAIAIVLLAVLLIPLLVYEKLQRRHL 300 Query: 301 EA 302 EA Sbjct: 301 EA 302 >ref|YP_001203359.1| putrescine ABC transporter membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL75122.1| putrescine transport protein (ABC superfamily, membrane) [Bradyrhizobium sp. ORS 278] Length = 310 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 251/304 (82%), Positives = 280/304 (92%) Query: 1 MSARRIFARPARLAAIAPYLWMVLFFLVPFGFVLKISLSQTAIAQPPYTPVFDFTAGRAA 60 MSARRIF+RPAR AAIAPY+WMVLFFLVPF FVLKISLSQTAIAQPPYTPVF + G ++ Sbjct: 7 MSARRIFSRPARFAAIAPYVWMVLFFLVPFAFVLKISLSQTAIAQPPYTPVFSWADGLSS 66 Query: 61 LAAAFAQLSFDNFRLLLQDNLYILSYLRSLVVAVSSTLILLLIGYPIAYGMARLPQRWQG 120 L AFA LSFDNFRLLL D+LY+ SYLRS+VVA++ST +LLLIGYPIAYGMARLP+RWQG Sbjct: 67 LRDAFAALSFDNFRLLLSDDLYLSSYLRSVVVALTSTAVLLLIGYPIAYGMARLPKRWQG 126 Query: 121 VAMMLVIVPFWTSFLIRIYAWINILQHDGLLNQMLLALHIVSAPVVWLSTDSAMYLGIVY 180 VAMMLVIVPFWTSFLIRIYAW+NILQHDGLLNQ+LLALHIVSAPVVWLSTDSAMY+GIVY Sbjct: 127 VAMMLVIVPFWTSFLIRIYAWVNILQHDGLLNQILLALHIVSAPVVWLSTDSAMYVGIVY 186 Query: 181 SYLPFMILPLYATLSRMDASLLEAAGDLGASPLQAFWLVTFPLSLPGVGAGALLCFIPVV 240 SYLPFMILPL+ATL++++ +L EA+ DLGA+P + FWLVTFPLSLPGVGAGALLCFIP+V Sbjct: 187 SYLPFMILPLFATLTKLEPALEEASADLGATPRETFWLVTFPLSLPGVGAGALLCFIPIV 246 Query: 241 GEFVIPDLLAGSNSLMIGQTLWLEFFTNKDWPVASAAAVALLLLLVPPLVLYDRLQRRQL 300 GEFVIPDLLAGS SLMIGQTLWLEFFTNKDWPVAS+ AV LL +L+ PL+LYDRLQRRQL Sbjct: 247 GEFVIPDLLAGSKSLMIGQTLWLEFFTNKDWPVASSIAVVLLAVLLLPLLLYDRLQRRQL 306 Query: 301 EAGR 304 E R Sbjct: 307 EESR 310 >ref|YP_533798.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] gb|ABD89479.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] Length = 304 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 245/304 (80%), Positives = 270/304 (88%) Query: 1 MSARRIFARPARLAAIAPYLWMVLFFLVPFGFVLKISLSQTAIAQPPYTPVFDFTAGRAA 60 MSAR+IF RPARLAAIAP++WM+L FLVPFGFV+KISLSQ IAQPPY P FD +AG A+ Sbjct: 1 MSARQIFTRPARLAAIAPFVWMLLLFLVPFGFVVKISLSQAVIAQPPYVPQFDLSAGWAS 60 Query: 61 LAAAFAQLSFDNFRLLLQDNLYILSYLRSLVVAVSSTLILLLIGYPIAYGMARLPQRWQG 120 L AAFA LS DNF+LL D LY SYLRSL VA S+T +L+LIGYPIAY MARLP+RWQ Sbjct: 61 LQAAFATLSLDNFKLLAADQLYWRSYLRSLAVAASATAVLILIGYPIAYAMARLPRRWQA 120 Query: 121 VAMMLVIVPFWTSFLIRIYAWINILQHDGLLNQMLLALHIVSAPVVWLSTDSAMYLGIVY 180 VAMMLVIVPFWTSFLIRIYAWINILQHDGLLNQ+LLALH+VSAPVVWLSTD AM LG+VY Sbjct: 121 VAMMLVIVPFWTSFLIRIYAWINILQHDGLLNQILLALHLVSAPVVWLSTDWAMMLGLVY 180 Query: 181 SYLPFMILPLYATLSRMDASLLEAAGDLGASPLQAFWLVTFPLSLPGVGAGALLCFIPVV 240 SYLPFMILPLYATL+++ ASLLEAA DLGASP +AFWLVTFPLSLPGVGAG LLCFIP+V Sbjct: 181 SYLPFMILPLYATLAKIPASLLEAAQDLGASPRRAFWLVTFPLSLPGVGAGVLLCFIPIV 240 Query: 241 GEFVIPDLLAGSNSLMIGQTLWLEFFTNKDWPVASAAAVALLLLLVPPLVLYDRLQRRQL 300 GEFVIPDLLAGS S+MIGQTLWLEFFTNKDWPVASA AV LL LL+ PL++Y+RLQRRQL Sbjct: 241 GEFVIPDLLAGSGSMMIGQTLWLEFFTNKDWPVASALAVLLLALLLVPLLVYERLQRRQL 300 Query: 301 EAGR 304 E R Sbjct: 301 EGRR 304