BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0093.0016.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_779180.1| putative PAS/PAC sensor protein [Rhodopseudomon...   115   2e-24
ref|YP_567288.1| hypothetical protein RPD_0147 [Rhodopseudomonas...   112   2e-23
ref|YP_004107013.1| PAS fold-4 domain-containing protein [Rhodop...   112   2e-23
ref|NP_945914.1| hypothetical protein RPA0561 [Rhodopseudomonas ...   107   5e-22
ref|YP_001989598.1| PAS fold-4 domain-containing protein [Rhodop...   107   6e-22

>ref|YP_779180.1| putative PAS/PAC sensor protein [Rhodopseudomonas palustris BisA53]
 gb|ABJ04200.1| putative PAS/PAC sensor protein [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 67/85 (78%)

Query: 7   VAGEKMFDIFPDNPNDAAADGVANLFESLNVVATTGQSHAMRIQRYDVRDANGVFVKRYW 66
           V G+ +F++ PDNP+   ADGV+NL++SL++V  TG+ HAM +QRYD+R  NG FV+R+W
Sbjct: 112 VVGKPLFEVLPDNPDLENADGVSNLYQSLSIVVKTGEPHAMAVQRYDIRAPNGQFVERHW 171

Query: 67  QPVNSPVLDDSGKIAFLLHQVIDVT 91
           QP+N+P+ DD+GK+  LLH V DVT
Sbjct: 172 QPINTPIHDDTGKLVCLLHHVEDVT 196


>ref|YP_567288.1| hypothetical protein RPD_0147 [Rhodopseudomonas palustris BisB5]
 gb|ABE37387.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 202

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 62/89 (69%)

Query: 3   DASKVAGEKMFDIFPDNPNDAAADGVANLFESLNVVATTGQSHAMRIQRYDVRDANGVFV 62
           D   + G ++F++FPDNP    ADGV+NL+ SL  V  TGQ HAM +QRYDVRD  G F+
Sbjct: 108 DRRDIVGRQLFEVFPDNPAIGTADGVSNLYASLRTVVETGQPHAMIVQRYDVRDRTGGFI 167

Query: 63  KRYWQPVNSPVLDDSGKIAFLLHQVIDVT 91
           +RYWQP+N+PV D   ++  LLH V DVT
Sbjct: 168 ERYWQPINTPVHDSGERLICLLHHVEDVT 196


>ref|YP_004107013.1| PAS fold-4 domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gb|ADU42280.1| PAS fold-4 domain protein [Rhodopseudomonas palustris DX-1]
          Length = 201

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 64/85 (75%)

Query: 7   VAGEKMFDIFPDNPNDAAADGVANLFESLNVVATTGQSHAMRIQRYDVRDANGVFVKRYW 66
           V G  +F+IFPDNP    ADGV+NL+ESL  V  TGQ HA+ +QRYDVR+A+GVFV+RYW
Sbjct: 111 VVGMSLFEIFPDNPAIVTADGVSNLYESLRTVVETGQPHALAVQRYDVRNADGVFVERYW 170

Query: 67  QPVNSPVLDDSGKIAFLLHQVIDVT 91
           Q +++PV D  G++  LLH + DVT
Sbjct: 171 QSISTPVQDLDGRLICLLHTIEDVT 195


>ref|NP_945914.1| hypothetical protein RPA0561 [Rhodopseudomonas palustris CGA009]
 emb|CAE26005.1| hypothetical protein RPA0561 [Rhodopseudomonas palustris CGA009]
          Length = 201

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 62/85 (72%)

Query: 7   VAGEKMFDIFPDNPNDAAADGVANLFESLNVVATTGQSHAMRIQRYDVRDANGVFVKRYW 66
           + G+ +F+IFPDNP    ADGV+N++ SL  V  TG+ HA+ +QRYD+R+  GVFV+RYW
Sbjct: 111 IVGKPLFEIFPDNPAIDTADGVSNVYNSLRAVVETGEPHALAVQRYDMRNTEGVFVERYW 170

Query: 67  QPVNSPVLDDSGKIAFLLHQVIDVT 91
           Q +N+PV D  GK+  LLH V DVT
Sbjct: 171 QSINTPVRDAGGKLICLLHNVEDVT 195


>ref|YP_001989598.1| PAS fold-4 domain-containing protein [Rhodopseudomonas palustris
           TIE-1]
 gb|ACE99122.1| PAS fold-4 domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 201

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 62/85 (72%)

Query: 7   VAGEKMFDIFPDNPNDAAADGVANLFESLNVVATTGQSHAMRIQRYDVRDANGVFVKRYW 66
           + G+ +F+IFPDNP    ADGV+N++ SL  V  TG+ HA+ +QRYD+R+  GVFV+RYW
Sbjct: 111 IVGKPLFEIFPDNPAIDTADGVSNVYNSLRAVVETGEPHALAVQRYDMRNTEGVFVERYW 170

Query: 67  QPVNSPVLDDSGKIAFLLHQVIDVT 91
           Q +N+PV D  GK+  LLH V DVT
Sbjct: 171 QSINTPVRDAGGKLICLLHNVEDVT 195