BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0093.0012.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773746.1| glycerol-3-phosphate dehydrogenase [Bradyrhizob... 469 e-130 ref|YP_001242632.1| glycerol-3-phosphate dehydrogenase [Bradyrhi... 431 e-119 ref|YP_001203357.1| glycerol-3-phosphate dehydrogenase [Bradyrhi... 386 e-105 ref|ZP_08627298.1| glycerol-3-phosphate dehydrogenase [Bradyrhiz... 313 4e-83 ref|YP_001768874.1| glycerol-3-phosphate dehydrogenase [Methylob... 297 2e-78 >ref|NP_773746.1| glycerol-3-phosphate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC52371.1| glycerol-3-phosphate dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 499 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 236/335 (70%), Positives = 274/335 (81%), Gaps = 2/335 (0%) Query: 1 VILLEQGDLGSGASQASPRLVHGDLAGLERREFFRVRRALRERDVLLRIAPHLVRPVRFV 60 VIL EQGDLG AS A+PRL+HGDL+ LERR F+RVRRAL ER + LRIAPHLVRP+RFV Sbjct: 29 VILFEQGDLGGAASSATPRLIHGDLSVLERRGFWRVRRALAERRIWLRIAPHLVRPMRFV 88 Query: 61 IPVHAEERPPWQLRSLLLLYEPLASRSGLPRSATLDVTHHPVGNALKRPFGTAFEYSDCV 120 IP H+EERPPW LR+ L +Y+ L +R GLP SATLD+THHPVGNALKRPFGTAFEYSDCV Sbjct: 89 IPAHSEERPPWLLRAGLYVYDGLTNRGGLPPSATLDITHHPVGNALKRPFGTAFEYSDCV 148 Query: 121 VDDSRLVVLTAVDAAARGADIRTGARVTRAERSETWRLIVIDRGYRRVITARALVNATGA 180 VDDSRLVVLTA+DAA RGA I TGAR RA+R++TWRL V+DRG+RR ITARAL NATG Sbjct: 149 VDDSRLVVLTALDAAERGAAIHTGARCVRADRTDTWRLAVVDRGHRRTITARALANATGG 208 Query: 181 WTASVADTVLRVPAPQLATVQISQIVVRRLFDCDNVYVFQNPDGRLIFASPYERDFTLIG 240 WT+ VADTVLR P P +A +Q+SQI+V RLFD +NVYVFQN DGRLIFA P ERDFTLIG Sbjct: 209 WTSMVADTVLREPQPAMAAMQMSQIIVPRLFDSENVYVFQNNDGRLIFARPLERDFTLIG 268 Query: 241 SVSHPFKGDPAVVAMDVREVAYLCDAANRYFREQIALVDVLRTVCGANSVVAPARRHKSD 300 +V+H F GDPA+VAM +V+YLC+AA+RYFRE++A DV+RTV G N +A AR D Sbjct: 269 TVTHAFTGDPAIVAMPGADVSYLCEAASRYFRERVAPTDVVRTVSGVNLTLASAR--GRD 326 Query: 301 GAALLDVGRGKAPLLTIFGGDVTTARRRAERAXDR 335 G AL R KAPL+T+FGGDVTT+R RAERA R Sbjct: 327 GTALFHARRRKAPLITMFGGDVTTSRLRAERAVTR 361 >ref|YP_001242632.1| glycerol-3-phosphate dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ38726.1| Glycerol-3-phosphate dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 515 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 234/335 (69%), Positives = 265/335 (79%) Query: 1 VILLEQGDLGSGASQASPRLVHGDLAGLERREFFRVRRALRERDVLLRIAPHLVRPVRFV 60 VIL+EQGDLGS AS AS RLVHGDLA LERR RVR AL ERDV LRIAPHLVRP+RF Sbjct: 29 VILVEQGDLGSAASSASSRLVHGDLASLERRRVLRVRAALAERDVWLRIAPHLVRPIRFA 88 Query: 61 IPVHAEERPPWQLRSLLLLYEPLASRSGLPRSATLDVTHHPVGNALKRPFGTAFEYSDCV 120 IP HAEERP WQLR+ L LY+ LA+R LP + TLDVTHHP+G+ALKRP GTAF YSDCV Sbjct: 89 IPAHAEERPTWQLRTGLWLYDRLAARKRLPAATTLDVTHHPIGDALKRPIGTAFAYSDCV 148 Query: 121 VDDSRLVVLTAVDAAARGADIRTGARVTRAERSETWRLIVIDRGYRRVITARALVNATGA 180 VDDSRLVVLTA+DAA RGA IRTGAR RA+R WRL +IDRG+RR++T+RAL NATGA Sbjct: 149 VDDSRLVVLTALDAAERGAAIRTGARCVRADRDRIWRLAIIDRGHRRIVTSRALANATGA 208 Query: 181 WTASVADTVLRVPAPQLATVQISQIVVRRLFDCDNVYVFQNPDGRLIFASPYERDFTLIG 240 W+ S A+TVLR P P + QISQIVV RLFD D VYVFQN DGRLIFA PYERDFTLIG Sbjct: 209 WSVSTAETVLRQPPPWVVARQISQIVVPRLFDVDAVYVFQNHDGRLIFAQPYERDFTLIG 268 Query: 241 SVSHPFKGDPAVVAMDVREVAYLCDAANRYFREQIALVDVLRTVCGANSVVAPARRHKSD 300 +V+H FKGDPAVVAM +VAYLC AANRYFR I VDV+RTV GAN ++ A + + Sbjct: 269 TVAHEFKGDPAVVAMPAPDVAYLCRAANRYFRSDIQPVDVVRTVSGANMMLRAAGGERLE 328 Query: 301 GAALLDVGRGKAPLLTIFGGDVTTARRRAERAXDR 335 L+ R +APLLT+ GGDVTTARRRAE+A +R Sbjct: 329 TVVSLEASRTQAPLLTMCGGDVTTARRRAEQAINR 363 >ref|YP_001203357.1| glycerol-3-phosphate dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL75120.1| Glycerol-3-phosphate dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 516 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 218/336 (64%), Positives = 252/336 (75%), Gaps = 1/336 (0%) Query: 1 VILLEQGDLGSGASQASPRLVHGDLAGLERREFFRVRRALRERDVLLRIAPHLVRPVRFV 60 V+L+EQGDLG AS A+ RLVHGDLA LERR RVRR+L ERDV L IAPH+VRPVRF Sbjct: 29 VLLVEQGDLGGAASSATSRLVHGDLAALERRSLLRVRRSLAERDVWLTIAPHVVRPVRFA 88 Query: 61 IPVHAEERPPWQLRSLLLLYEPLASRSGLPRSATLDVTHHPVGNALKRPFGTAFEYSDCV 120 IP H+ ERP WQLR+ L LY+ LA+R LP ++TLDVTHHP+G+ALKRP GTAFEYSDCV Sbjct: 89 IPAHSNERPHWQLRTGLWLYDRLAARRRLPAASTLDVTHHPIGDALKRPIGTAFEYSDCV 148 Query: 121 VDDSRLVVLTAVDAAARGADIRTGARVTRAERSETWRLIVIDRGYRRVITARALVNATGA 180 VDDSRLV LTA+DAA RGA IRTGAR RA+R WRL +IDRG+RR++TA AL NA GA Sbjct: 149 VDDSRLVALTALDAAERGAAIRTGARCIRADRDRLWRLAIIDRGHRRIVTAGALANAAGA 208 Query: 181 WTASVADTVLRVPAPQLATVQISQIVVRRLFDCDNVYVFQNPDGRLIFASPYERDFTLIG 240 W+ S A+TVLR P + QI+QIVV RLFD D VYVFQN DGRLIFA PY FTLIG Sbjct: 209 WSVSTAETVLRQPPLRATARQINQIVVPRLFDVDAVYVFQNSDGRLIFAQPYAGAFTLIG 268 Query: 241 SVSHPFKGDPAVVAMDVREVAYLCDAANRYFREQIALVDVLRTVCGANSVVAPARRHKSD 300 +V+H F GDPAVV + +V+YLC AANRYFR I DVLRTV GAN ++ + Sbjct: 269 TVAHGFTGDPAVVTVPAADVSYLCKAANRYFRSDIQPADVLRTVSGANMMLLRGEKAGQP 328 Query: 301 GAAL-LDVGRGKAPLLTIFGGDVTTARRRAERAXDR 335 A + D R KAPLLT+ GGDVTT RRRAE+A R Sbjct: 329 EAVVSFDASRSKAPLLTMCGGDVTTVRRRAEQAVSR 364 >ref|ZP_08627298.1| glycerol-3-phosphate dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09924.1| glycerol-3-phosphate dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] Length = 481 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 176/332 (53%), Positives = 222/332 (66%), Gaps = 6/332 (1%) Query: 1 VILLEQGDLGSGASQASPRLVHGDLAGLERREFFRVRRALRERDVLLRIAPHLVRPVRFV 60 V L EQ DLGSGA+ A L+HGD LER VR +L ERD+ LR APHLVRP+R+V Sbjct: 29 VALFEQNDLGSGAAMAGSHLIHGDFIALERGRARHVRISLAERDIALRAAPHLVRPIRYV 88 Query: 61 IPVHAEERPPWQLRSLLLLYEPLASRSGLPRSATLDVTHHPVGNALKRPFGTAFEYSDCV 120 +P+HAE RPP LR+ L Y+ LA +SGLPR LD+T G+ LKR G A +SDC+ Sbjct: 89 MPIHAEGRPPAMLRAGLFFYDRLAGQSGLPRPEILDLTIDEAGHPLKRSLGLALGWSDCI 148 Query: 121 VDDSRLVVLTAVDAAARGADIRTGARVTRAERSETWRLIVIDRGYRRVITARALVNATGA 180 D++R VVL AVDAAARGA I TGAR AERS+TW+L +++RG R +TAR LV+A+GA Sbjct: 149 ADETRFVVLNAVDAAARGAAIHTGARCVWAERSDTWKLTILNRGRREHVTARVLVDASGA 208 Query: 181 WTASVADTVLRVPAPQLATVQISQIVVRRLFDCDNVYVFQNPDGRLIFASPYERDFTLIG 240 WT VA++VL +PA Q + +ISQIVVRRLFD DNVYV QN D R+I+A P+ RDFTLIG Sbjct: 209 WTRRVAESVLHLPAVQASFAKISQIVVRRLFDHDNVYVLQNDDRRMIYAIPFHRDFTLIG 268 Query: 241 SVSHPFKGDPAVVAMDVREVAYLCDAANRYFREQIALVDVLRTVCGANSVVAPARRHKSD 300 F GDPA V+ V ++AYLC A +RYFRE + DV+ G + + Sbjct: 269 LSERVFDGDPATVSPGVDDLAYLCTAVSRYFRELVIPADVVHAAAGCVA------GESGE 322 Query: 301 GAALLDVGRGKAPLLTIFGGDVTTARRRAERA 332 G ++ RG+APLLT+ GG ARR A +A Sbjct: 323 GFVKMNRRRGEAPLLTVGGGATAGARRLAVQA 354 >ref|YP_001768874.1| glycerol-3-phosphate dehydrogenase [Methylobacterium sp. 4-46] gb|ACA16440.1| FAD dependent oxidoreductase [Methylobacterium sp. 4-46] Length = 509 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 177/350 (50%), Positives = 211/350 (60%), Gaps = 8/350 (2%) Query: 1 VILLEQGDLGSGASQASPRLVHGDLAGLERREFFRVRRALRERDVLLRIAPHLVRPVRFV 60 V+L EQGDL G S AS +L+HG L LE REF VR AL ER+VL APH+V P+RFV Sbjct: 36 VVLFEQGDLAGGTSSASTKLIHGGLRYLEHREFRLVREALMEREVLWASAPHIVWPLRFV 95 Query: 61 IPVHAEERPPWQLRSLLLLYEPLASRSGLPRSATLDVTHHPVGNALKRPFGTAFEYSDCV 120 +P RP W LR L LY+ L R LP + +LD+ G LK F AFEYSDC Sbjct: 96 LPHLPGLRPAWLLRLGLFLYDHLGGRRLLPGTRSLDLARDEAGAPLKAGFRRAFEYSDCW 155 Query: 121 VDDSRLVVLTAVDAAARGADIRTGARVTRAERSET-WRLIVIDRGYRRVITARALVNATG 179 V+D+RLVVL A DAAARGA+IRT RV A R W L V G R + AR LVNA G Sbjct: 156 VEDARLVVLNARDAAARGAEIRTRTRVVAAARGPAHWELTVEAGGRRETVRARILVNAAG 215 Query: 180 AWTASVADTVLRV-PAPQLATVQISQIVVRRLFDCDNVYVFQNPDGRLIFASPYERDFTL 238 W + V V+R A + VQ S IVVRRLF D Y+FQNPDGR++FA PYERDFTL Sbjct: 216 PWVSEVLTGVVRANAAAGVRLVQGSHIVVRRLFRHDRAYIFQNPDGRIVFAIPYERDFTL 275 Query: 239 IGSVSHPFKGDPAVVAMDVREVAYLCDAANRYFREQIALVDVLRTVCGANSV----VAPA 294 IG+ ++GDPA VA E+AYLC AA+ YFRE I DV+ T G + A Sbjct: 276 IGTTDRDYRGDPAAVAASEEEIAYLCAAASEYFREAIRPQDVVWTYSGVRPLYDDGAGKA 335 Query: 295 RRHKSDGAALLDVGRGKAPLLTIFGGDVTTARRRAERAXD--RDSAAAGR 342 + D LD G +APLL++FGG +TT RR AE A + RD A R Sbjct: 336 QEATRDYVLTLDAGGDRAPLLSVFGGKITTYRRLAEAALEQLRDHLGAAR 385