BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0093.0002.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08631081.1| DnaJ-class molecular chaperone CbpA [Bradyrhi... 478 e-133 ref|YP_002967056.1| putative cbpA-like protein [Methylobacterium... 461 e-128 ref|YP_002540911.1| DNAJ molecular chaperone protein [Agrobacter... 422 e-116 ref|YP_001243537.1| putative heat shock protein- DnaJ-like prote... 347 1e-93 ref|YP_003755117.1| chaperone DnaJ domain-containing protein [Hy... 341 7e-92 >ref|ZP_08631081.1| DnaJ-class molecular chaperone CbpA [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06182.1| DnaJ-class molecular chaperone CbpA [Bradyrhizobiaceae bacterium SG-6C] Length = 301 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 237/299 (79%), Positives = 265/299 (88%), Gaps = 1/299 (0%) Query: 3 NPYEVLGVAPTASSADIQKAYRKLAKKLHPDLNPGDKAAEDKFKEVAAANDLLSDAEKRK 62 NPYEVLGV P AS+ADIQKAYRKLAK+LHPDLNPGDK+AE+KFKEVA A DLLSDA+KRK Sbjct: 3 NPYEVLGVTPAASAADIQKAYRKLAKQLHPDLNPGDKSAEEKFKEVAGAYDLLSDADKRK 62 Query: 63 RFDAGEIDADGTERPQHRYYRDFATAGEGHPYADSSGYADYMDQDDAFAELLRRTEQARA 122 RFD GEIDA G ERPQH +YRD+AT+ GH Y D SGYAD+MD DDAFAELLR+ ++ARA Sbjct: 63 RFDNGEIDATGAERPQHNFYRDYATSDNGHHYTDHSGYADFMDTDDAFAELLRQGQRARA 122 Query: 123 NRRGRDLHYSLAIDFAESIAGASKRLTLPDGGTLDVTIPPGLIDGQVIRLRGKGMPGSGK 182 NRRGRDLHYSLAIDFA+SI GASKRLTLPDG TLDV IPPG++DGQV+RL+GKG PGSGK Sbjct: 123 NRRGRDLHYSLAIDFADSITGASKRLTLPDGDTLDVRIPPGVVDGQVLRLKGKGAPGSGK 182 Query: 183 GGPGDALIEVDVRADPRFTRDGDDISLELPISLSEAVLGGKVQVPTPTGAVTMTVPKGSN 242 G GDALIEV+V D RFTRDGD+ISLELPISLSEAVLGG+V+VPTPTG VTM+VPKGSN Sbjct: 183 GAAGDALIEVEVVPDRRFTRDGDNISLELPISLSEAVLGGRVRVPTPTGDVTMSVPKGSN 242 Query: 243 TGTTMRLRGKGAPRVGGGHGDEFVKLKVVLPKGPDPTLEAFVSNWDR-KGFNPREDGAS 300 TGTT+RL+GKGAP GGG GD+FVKLKVVLP+ PDP LEAFVSNW++ K FNPRED S Sbjct: 243 TGTTLRLKGKGAPHSGGGFGDQFVKLKVVLPRTPDPELEAFVSNWEKGKDFNPREDRTS 301 >ref|YP_002967056.1| putative cbpA-like protein [Methylobacterium extorquens AM1] gb|ACS43715.1| putative cbpA-like protein [Methylobacterium extorquens AM1] Length = 300 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/300 (75%), Positives = 261/300 (87%) Query: 1 VRNPYEVLGVAPTASSADIQKAYRKLAKKLHPDLNPGDKAAEDKFKEVAAANDLLSDAEK 60 +++PY+VLGVA T+S+A+IQKAYRKLAKKLHPDLNPGDKAAEDKFKEVAAA DLLSDA+K Sbjct: 1 MKDPYDVLGVAQTSSAAEIQKAYRKLAKKLHPDLNPGDKAAEDKFKEVAAAYDLLSDADK 60 Query: 61 RKRFDAGEIDADGTERPQHRYYRDFATAGEGHPYADSSGYADYMDQDDAFAELLRRTEQA 120 RKRFDAGEIDA G ERPQH YYRDFAT+ +G YAD+SG+AD+M QDDAFAELLRR+ +A Sbjct: 61 RKRFDAGEIDASGAERPQHHYYRDFATSDQGASYADASGFADFMGQDDAFAELLRRSSRA 120 Query: 121 RANRRGRDLHYSLAIDFAESIAGASKRLTLPDGGTLDVTIPPGLIDGQVIRLRGKGMPGS 180 R NRRG DLHY L IDFA+SI G +KRL LPDG T+DV IPPGLIDGQ +RL+GKG PGS Sbjct: 121 RPNRRGHDLHYHLEIDFADSITGGTKRLDLPDGSTIDVKIPPGLIDGQTLRLKGKGAPGS 180 Query: 181 GKGGPGDALIEVDVRADPRFTRDGDDISLELPISLSEAVLGGKVQVPTPTGAVTMTVPKG 240 GKG GDALIEV+VR D RFTR+GDDI+ ELP+S++EAVLGG+V+VPTPTG VTM+VPKG Sbjct: 181 GKGEAGDALIEVEVRPDRRFTREGDDITFELPVSITEAVLGGQVRVPTPTGEVTMSVPKG 240 Query: 241 SNTGTTMRLRGKGAPRVGGGHGDEFVKLKVVLPKGPDPTLEAFVSNWDRKGFNPREDGAS 300 SNTGT +RLRGKGAP+ GGG GD+FV LKVVLPK D LEAFVSNW +G++PRE AS Sbjct: 241 SNTGTRLRLRGKGAPKRGGGQGDQFVTLKVVLPKVADSELEAFVSNWKDRGYDPREGRAS 300 >ref|YP_002540911.1| DNAJ molecular chaperone protein [Agrobacterium radiobacter K84] gb|ACM29315.1| DNAJ molecular chaperone protein [Agrobacterium radiobacter K84] Length = 283 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 217/283 (76%), Positives = 247/283 (87%), Gaps = 1/283 (0%) Query: 19 IQKAYRKLAKKLHPDLNPGDKAAEDKFKEVAAANDLLSDAEKRKRFDAGEIDADGTERPQ 78 +Q AYRKLAKKLHPDLNPGDK AE+KFKEVA A DLL DAEKRKRFD+GEIDA G ERPQ Sbjct: 1 MQSAYRKLAKKLHPDLNPGDKTAEEKFKEVAGAYDLLGDAEKRKRFDSGEIDASGAERPQ 60 Query: 79 HRYYRDFATAGEGHPYADSSGYADYMDQDDAFAELLRRTEQARANRRGRDLHYSLAIDFA 138 H YYRDFA +GHPY+D++G+AD+MD DDAFAELLRR ++ RANRRG+D+H+ L IDF Sbjct: 61 HPYYRDFAGVDQGHPYSDTAGFADFMDADDAFAELLRRGQRGRANRRGQDMHFRLPIDFV 120 Query: 139 ESIAGASKRLTLPDGGTLDVTIPPGLIDGQVIRLRGKGMPGSGKGGPGDALIEVDVRADP 198 ESI GA+KRLTLPDGGTLDV IPPGL+DGQV+RL+GKG PG+GKG PGDALIEV+V D Sbjct: 121 ESIVGANKRLTLPDGGTLDVKIPPGLVDGQVLRLKGKGAPGAGKGTPGDALIEVEVLPDR 180 Query: 199 RFTRDGDDISLELPISLSEAVLGGKVQVPTPTGAVTMTVPKGSNTGTTMRLRGKGAPRVG 258 RFTR+GDDISLELPISLSEAVLGG+++VPTPTG VTM+VPKGSNTGTT+RL+GKGAP G Sbjct: 181 RFTREGDDISLELPISLSEAVLGGRIRVPTPTGDVTMSVPKGSNTGTTLRLKGKGAPHRG 240 Query: 259 GGHGDEFVKLKVVLPKGPDPTLEAFVSNWDR-KGFNPREDGAS 300 GG GD+FV+LKVVLPK PDP LEAFV+NW K FNPRED S Sbjct: 241 GGQGDQFVRLKVVLPKSPDPELEAFVANWSAGKDFNPREDRTS 283 >ref|YP_001243537.1| putative heat shock protein- DnaJ-like protein [Bradyrhizobium sp. BTAi1] gb|ABQ39631.1| putative Heat shock protein- DnaJ-like protein [Bradyrhizobium sp. BTAi1] Length = 336 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 183/295 (62%), Positives = 220/295 (74%), Gaps = 2/295 (0%) Query: 3 NPYEVLGVAPTASSADIQKAYRKLAKKLHPDLNPGDKAAEDKFKEVAAANDLLSDAEKRK 62 +PY VLGV AS DIQKAYRKLAKKLHPDLNPG+K AE++FK V+AA DLLSD EKR Sbjct: 37 DPYNVLGVKKDASQDDIQKAYRKLAKKLHPDLNPGNKQAEEQFKAVSAAYDLLSDPEKRA 96 Query: 63 RFDAGEIDADGTERPQHRYYRDFATAGEG-HPYADSSGYADYMDQDDAFAELLRRTEQAR 121 RFD GEIDA G ERP+ RYYRDFA G HPYA S G++D+ D+ D F+ L R + Sbjct: 97 RFDRGEIDASGQERPRQRYYRDFAGGAAGDHPYASSEGFSDFSDEGDLFSSLFGRGGRMN 156 Query: 122 ANRRGRDLHYSLAIDFAESIAGASKRLTLPDGGTLDVTIPPGLIDGQVIRLRGKGMPGSG 181 RG+D+HY L ++F E++ GA++R+TL DG T+DVT+PPG DGQ++RL GKG G G Sbjct: 157 LKMRGQDVHYRLPVEFLEAVNGATRRITLSDGSTVDVTVPPGARDGQLLRLAGKGGAGIG 216 Query: 182 KGGPGDALIEVDVRADPRFTRDGDDISLELPISLSEAVLGGKVQVPTPTGAVTMTVPKGS 241 G PGDA +E+ V+ P FTR DDI LELP+SL+EAVLGGK+ VPTPTGAV+M VPKGS Sbjct: 217 GGPPGDAFVEIVVKPHPLFTRKDDDIHLELPVSLTEAVLGGKISVPTPTGAVSMNVPKGS 276 Query: 242 NTGTTMRLRGKGAPRVGGGHGDEFVKLKVVLPKGPDPTLEAFVSNWDR-KGFNPR 295 NTGT +RLRGKG R G GDE+VKLKVVLP+ PDP LE FV +W K +PR Sbjct: 277 NTGTVLRLRGKGVARSNGTRGDEYVKLKVVLPEKPDPELEKFVQSWTAGKAHDPR 331 >ref|YP_003755117.1| chaperone DnaJ domain-containing protein [Hyphomicrobium denitrificans ATCC 51888] gb|ADJ22796.1| chaperone DnaJ domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 302 Score = 341 bits (875), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 169/289 (58%), Positives = 218/289 (75%), Gaps = 3/289 (1%) Query: 3 NPYEVLGVAPTASSADIQKAYRKLAKKLHPDLNPGDKAAEDKFKEVAAANDLLSDAEKRK 62 +PY+VLGVA AS DIQKAYRKLAKKLHPDLNPG+KAAED+FK+V+AA +L+ DA+KR Sbjct: 4 DPYKVLGVARDASQNDIQKAYRKLAKKLHPDLNPGNKAAEDEFKKVSAAYELVGDADKRA 63 Query: 63 RFDAGEIDADGTERPQHRYYRDFATAGEGHPYADSSGYADYMDQDDAFAELLRRTEQARA 122 RFD GEIDA G E P+ YYR++A G+ YA++ GY+D+ DD F+ + RR+ +R+ Sbjct: 64 RFDKGEIDASGAETPKREYYRNYA-GGDADSYANAGGYSDFASDDDLFSSMFRRSSTSRS 122 Query: 123 N--RRGRDLHYSLAIDFAESIAGASKRLTLPDGGTLDVTIPPGLIDGQVIRLRGKGMPGS 180 N RG+D HY LA+DF +++ GAS+++TLPDG LDV+IP G DGQ +RLRGKG PG Sbjct: 123 NVRMRGQDEHYKLALDFLDAVNGASRQVTLPDGSVLDVSIPAGTRDGQTLRLRGKGSPGF 182 Query: 181 GKGGPGDALIEVDVRADPRFTRDGDDISLELPISLSEAVLGGKVQVPTPTGAVTMTVPKG 240 G PGDAL+EV++R P FTR GDDI +EL + L++AVLGGK++VPT G VTMTVPK Sbjct: 183 NGGEPGDALVEVEIRPHPVFTRKGDDIQVELQLPLADAVLGGKIKVPTIDGTVTMTVPKW 242 Query: 241 SNTGTTMRLRGKGAPRVGGGHGDEFVKLKVVLPKGPDPTLEAFVSNWDR 289 SN+G T+RL+GKG R GDE+V LK++LP+ PDP LE VS W + Sbjct: 243 SNSGRTLRLKGKGIKRADTLPGDEYVTLKIMLPEKPDPELEKLVSEWQQ 291