BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0091.0006.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771900.1| transcriptional regulator [Bradyrhizobium japon...   195   2e-48
ref|ZP_07028384.1| transcriptional regulator, LysR family [Afipi...   174   3e-42
ref|ZP_08630303.1| transcriptional regulator, LysR family [Brady...   155   2e-36
ref|YP_001240822.1| LysR family transcriptional regulator [Brady...   145   3e-33
ref|YP_002872040.1| putative LysR family regulatory protein [Pse...   129   1e-28

>ref|NP_771900.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50525.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 283

 Score =  195 bits (495), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 128/138 (92%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           VRQEGSRRGGEKL EDEF WFA++RF  P+G+ LPLATLAPPCGVRA+AVRALDKAG+AW
Sbjct: 146 VRQEGSRRGGEKLAEDEFCWFASRRFTLPKGEPLPLATLAPPCGVRAIAVRALDKAGLAW 205

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
            E FVGGGVTAVVAAALAGLA+APL RRIAPPGL+DIGPAHKLP+LG+SKVMLHSKV DP
Sbjct: 206 RERFVGGGVTAVVAAALAGLAIAPLARRIAPPGLIDIGPAHKLPKLGSSKVMLHSKVSDP 265

Query: 121 AKLAALRTLAATFRSVAS 138
           AKLAALR +AATF+SVA+
Sbjct: 266 AKLAALRAVAATFKSVAA 283


>ref|ZP_07028384.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gb|EFI50374.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 284

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 116/140 (82%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           VR EGS RGGEKLTEDEFGWFAA  F W  G+ LP+ATLAP CGVRA+AVRALDKA + W
Sbjct: 145 VRPEGSHRGGEKLTEDEFGWFAAPSFNWAVGERLPIATLAPSCGVRAIAVRALDKAKLPW 204

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
           TE+F+GGGVTAVVAAA AGL  APL RRIAPPGL+DIG  +KLP+LG SKVML+S+V D 
Sbjct: 205 TETFIGGGVTAVVAAAEAGLGAAPLARRIAPPGLIDIGATYKLPKLGRSKVMLYSRVSDA 264

Query: 121 AKLAALRTLAATFRSVASAA 140
           A+LAALRT++A FR +  AA
Sbjct: 265 AQLAALRTISAAFRKIVLAA 284


>ref|ZP_08630303.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP06682.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 283

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 113/138 (81%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           VRQEGSRRGGE L  D+FGWFA+  F W +G+ LP+A LA PCGVRA+AVRALDKA + W
Sbjct: 145 VRQEGSRRGGETLCTDDFGWFASPSFRWSKGETLPVAALAAPCGVRAMAVRALDKARLKW 204

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
           TE+F+GGGV+AVVAAA AGLAVAPL +RIAP G+VD+G A  LP+LG SKVML+S+V D 
Sbjct: 205 TEAFIGGGVSAVVAAAAAGLAVAPLAKRIAPAGMVDVGTAFGLPKLGVSKVMLYSRVSDA 264

Query: 121 AKLAALRTLAATFRSVAS 138
           +K AALR LAATFR  A+
Sbjct: 265 SKRAALRILAATFRKEAA 282


>ref|YP_001240822.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ36916.1| putative transcriptional regulator, LysR family [Bradyrhizobium sp.
           BTAi1]
          Length = 285

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 100/122 (81%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           VRQE SRRGGE L EDEFGW+A+ RF +  G  +PLATLA PCGVRA+AVRALDKA + +
Sbjct: 146 VRQEASRRGGETLAEDEFGWYASPRFGFALGSPVPLATLAAPCGVRAIAVRALDKARLPF 205

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
            ESFVGGGV AV AAA AGLA+APL RRIAPPGLVD+GPA  LPRLG SKV+LH+KV D 
Sbjct: 206 VESFVGGGVAAVAAAAQAGLAIAPLARRIAPPGLVDVGPALGLPRLGRSKVILHAKVSDA 265

Query: 121 AK 122
           AK
Sbjct: 266 AK 267


>ref|YP_002872040.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 emb|CAY48669.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 288

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 86/134 (64%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           VR EG R+ GE L  + FGWFAA  +    G  L +AT+A PCGVR LA RALD A I W
Sbjct: 150 VRNEGDRQDGEVLAVERFGWFAAPTWQHSPGTPLRMATMAAPCGVRHLATRALDAARIDW 209

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
           TE FVGGGV AV AA  AGL VA L  R+AP G VD+   + LP L  S+V+L+S++ D 
Sbjct: 210 TEVFVGGGVMAVGAAVSAGLGVAALAHRVAPSGAVDVSEQYGLPTLPVSEVVLYSRISDG 269

Query: 121 AKLAALRTLAATFR 134
                LR L+ATFR
Sbjct: 270 RSKETLRALSATFR 283