BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0090.0030.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004333717.1| ABC transporter integral membrane subunit [P... 261 1e-67 ref|YP_001229963.1| binding-protein-dependent transport systems ... 243 2e-62 ref|YP_994926.1| binding-protein-dependent transport systems inn... 242 6e-62 ref|YP_995733.1| binding-protein-dependent transport systems inn... 234 1e-59 ref|ZP_08154937.1| oligopeptide ABC superfamily ATP binding cass... 227 2e-57 >ref|YP_004333717.1| ABC transporter integral membrane subunit [Pseudonocardia dioxanivorans CB1190] gb|AEA25864.1| ABC-type transporter, integral membrane subunit [Pseudonocardia dioxanivorans CB1190] Length = 321 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 147/295 (49%), Positives = 191/295 (64%), Gaps = 5/295 (1%) Query: 1 MATLELSLEE----EAGATPVRRRRGLGMLFW-IAVGWMALVFAVAIFADLLPLPSPTDM 55 + +++L L E PV+ RR + W +A W+A V AIFA LLPL P Sbjct: 27 VTSVDLDLVEPITGNTATEPVKARRTRTPIGWYLAWFWIAAVVISAIFAPLLPLWDPAVP 86 Query: 56 DMLERRAPISAEHWLGTDGLGRDELSRLIYGARISLIVGLCAPMIGVTIGGALGMLAGYF 115 D I+ EHWLG D LGRD LSR+IYGAR SL+VG+CA ++G +GG LGM+AGYF Sbjct: 87 DYNNVFGGITPEHWLGGDTLGRDNLSRIIYGARASLLVGICAVLLGAVVGGILGMMAGYF 146 Query: 116 RGRFESFVVGSMDVLLAFPPLILALAVTAYLGQSIFNLTCILGVLGIPAFMRVARAATLS 175 RGR E + DV+LAFP L+L +A+ A LG S+ NL L +L +P F+R+ARA TL Sbjct: 147 RGRTERVLSLVTDVVLAFPGLVLIIAIVAILGASLTNLIVGLAILSVPTFIRLARATTLV 206 Query: 176 LARREFVIAAQALGATHARILLRELLPNVMLPLLAFFLLGVAVTIVVEGSLSFLGLGVPP 235 + +REFV AA+A GA RI+LRE+ PNV++P+ A+ + V V IVVEGSLSFLGLG+PP Sbjct: 207 VTQREFVHAARAYGAKPMRIILREIAPNVVMPIAAYGFIMVGVFIVVEGSLSFLGLGIPP 266 Query: 236 PISSWGSMIGEGRESLEVAPRLAFIPAIAMFLTVLSFNLIGDTMRALTDPRQGAL 290 P SWG MI GR L P ++ IPA MFLTVL+ N +G+ R L + R+ L Sbjct: 267 PTPSWGGMIAGGRTQLIEYPHISLIPAAVMFLTVLAINYVGERSRKLFEVRESNL 321 >ref|YP_001229963.1| binding-protein-dependent transport systems inner membrane component [Geobacter uraniireducens Rf4] gb|ABQ25390.1| binding-protein-dependent transport systems inner membrane component [Geobacter uraniireducens Rf4] Length = 273 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/271 (47%), Positives = 173/271 (63%), Gaps = 1/271 (0%) Query: 21 RGLGMLFWIAVGWMALVFAVAIFADLLPLPSPTDMDMLERRA-PISAEHWLGTDGLGRDE 79 + G++FW+A W+ + A+ A +P P +D + A P H LGTD +GRD Sbjct: 3 KKTGIVFWLATAWIGFMMVCAVSAGFWSVPPPDQIDWINLAAKPGVGGHLLGTDNMGRDI 62 Query: 80 LSRLIYGARISLIVGLCAPMIGVTIGGALGMLAGYFRGRFESFVVGSMDVLLAFPPLILA 139 +RL++GARISL VG +P IG+ G LG+LAG++R E + G++D LAFP L+ Sbjct: 63 AARLLFGARISLTVGFFSPCIGLFFGCLLGVLAGFYRDYPEKMIGGAIDTFLAFPRLVFL 122 Query: 140 LAVTAYLGQSIFNLTCILGVLGIPAFMRVARAATLSLARREFVIAAQALGATHARILLRE 199 L T G S+ LT LGV+ IP+F RVARA T+ A REFV+AA+ GA+ A I+LRE Sbjct: 123 LMATFVFGSSLPTLTIALGVVAIPSFARVARANTIRFAEREFVLAARGAGASDAAIILRE 182 Query: 200 LLPNVMLPLLAFFLLGVAVTIVVEGSLSFLGLGVPPPISSWGSMIGEGRESLEVAPRLAF 259 +LPNV++P+L + LL + I+ EG L FLGL VP P SWG MI EGRE LE AP ++ Sbjct: 183 ILPNVLMPMLVYMLLVMGFVIIAEGGLGFLGLSVPSPTPSWGGMIAEGREVLEQAPHVSM 242 Query: 260 IPAIAMFLTVLSFNLIGDTMRALTDPRQGAL 290 IP I MFLT++S NL+GD MR D R+ L Sbjct: 243 IPTIVMFLTIMSLNLVGDRMRGWFDGRESQL 273 >ref|YP_994926.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM55908.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 285 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 133/253 (52%), Positives = 169/253 (66%) Query: 33 WMALVFAVAIFADLLPLPSPTDMDMLERRAPISAEHWLGTDGLGRDELSRLIYGARISLI 92 W+ V +A+ AD LPLPSPTDMD H LG D GRD +RL +GAR+SLI Sbjct: 30 WLLGVLFLALAADWLPLPSPTDMDFAAAGQGPGTAHLLGLDLDGRDIFARLAHGARVSLI 89 Query: 93 VGLCAPMIGVTIGGALGMLAGYFRGRFESFVVGSMDVLLAFPPLILALAVTAYLGQSIFN 152 V AP+IG+ G ALG+LA Y+ G + ++ +D +LAFP L+ AL +T LG S+ N Sbjct: 90 VCSVAPLIGLVFGSALGLLAAYYGGVLRTAILALLDAMLAFPSLVFALGLTVVLGPSVHN 149 Query: 153 LTCILGVLGIPAFMRVARAATLSLARREFVIAAQALGATHARILLRELLPNVMLPLLAFF 212 + LGV+ IPAF R+ARA L L REFV+AA+ GA+ +I+LRE+LPN+ L LL + Sbjct: 150 VALALGVMSIPAFARIARANALPLIGREFVLAARTAGASDWQIMLREILPNMALSLLTYA 209 Query: 213 LLGVAVTIVVEGSLSFLGLGVPPPISSWGSMIGEGRESLEVAPRLAFIPAIAMFLTVLSF 272 L +V IV EGSLSFLG+GVPPP SWG MI +GRESLE P ++ IPA AMFLTVLS Sbjct: 210 LTITSVMIVAEGSLSFLGVGVPPPTPSWGGMIADGRESLERVPHVSLIPAAAMFLTVLSL 269 Query: 273 NLIGDTMRALTDP 285 NL+GD +R P Sbjct: 270 NLLGDGLRQRRSP 282 >ref|YP_995733.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM56715.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 281 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/253 (54%), Positives = 175/253 (69%), Gaps = 1/253 (0%) Query: 39 AVAIFADLLPLPSPTDM-DMLERRAPISAEHWLGTDGLGRDELSRLIYGARISLIVGLCA 97 A A+ A L LP P D E P S HWLGTD +GRD LSR+I+G RISL VGL A Sbjct: 29 AAALLAPWLGLPDPAGAADFAELSVPPSPAHWLGTDDVGRDLLSRVIWGTRISLTVGLGA 88 Query: 98 PMIGVTIGGALGMLAGYFRGRFESFVVGSMDVLLAFPPLILALAVTAYLGQSIFNLTCIL 157 +IG+ GGALG+ AGY RGR+E V+ +DV+L+FPPL+ AL ++A LG S+ N+T + Sbjct: 89 TLIGLLAGGALGLTAGYLRGRYEQAVLWLLDVILSFPPLVAALTISAVLGPSLANVTLAI 148 Query: 158 GVLGIPAFMRVARAATLSLARREFVIAAQALGATHARILLRELLPNVMLPLLAFFLLGVA 217 + +PAF RV RAATL A+REFV+AA +LGA+H +LLRELLPNV+L +L + L VA Sbjct: 149 AFIKVPAFARVTRAATLLHAQREFVLAAHSLGASHGDVLLRELLPNVLLAILGYALTNVA 208 Query: 218 VTIVVEGSLSFLGLGVPPPISSWGSMIGEGRESLEVAPRLAFIPAIAMFLTVLSFNLIGD 277 V I EG+L+FLGL VPPP +SWG++I +GR L AP +A IPA+ MF+TVL+ NLIGD Sbjct: 209 VAIATEGALAFLGLSVPPPAASWGALIAQGRPVLAEAPHVALIPALVMFVTVLTLNLIGD 268 Query: 278 TMRALTDPRQGAL 290 D R L Sbjct: 269 AWHRRFDTRGAVL 281 >ref|ZP_08154937.1| oligopeptide ABC superfamily ATP binding cassette transporter, permease protein [Rhodococcus equi ATCC 33707] gb|EGD23635.1| oligopeptide ABC superfamily ATP binding cassette transporter, permease protein [Rhodococcus equi ATCC 33707] Length = 307 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 120/249 (48%), Positives = 167/249 (67%), Gaps = 1/249 (0%) Query: 33 WMALVFAVAIFADLLPLPSPTDMDMLERRAPI-SAEHWLGTDGLGRDELSRLIYGARISL 91 W+ L+ A+ A +LPLP+P + AP + H LGTD LGRD+LSR+++GA++SL Sbjct: 50 WLVLIAGAAVLAPVLPLPAPDHVGDQYSLAPFRTMTHLLGTDQLGRDQLSRVVFGAQVSL 109 Query: 92 IVGLCAPMIGVTIGGALGMLAGYFRGRFESFVVGSMDVLLAFPPLILALAVTAYLGQSIF 151 V + A ++ +T+G A+G+ AGYFRG + + + LAFPPLIL +A+ A + S+ Sbjct: 110 AVAVGATLLALTVGTAVGLAAGYFRGVTDVVFDITTNTTLAFPPLILLVALVAVMQPSVT 169 Query: 152 NLTCILGVLGIPAFMRVARAATLSLARREFVIAAQALGATHARILLRELLPNVMLPLLAF 211 LT LG++G P F R+ARA +S + REFV A+++LG++ RIL RE+LPN++LP+ +F Sbjct: 170 TLTLGLGIVGAPTFARIARANAISFSGREFVTASKSLGSSTFRILRREILPNILLPVFSF 229 Query: 212 FLLGVAVTIVVEGSLSFLGLGVPPPISSWGSMIGEGRESLEVAPRLAFIPAIAMFLTVLS 271 + A +V EGSLSFLGLG+PPP SWG MI GRESL P L +P + FLTVLS Sbjct: 230 ATVVAASLVVAEGSLSFLGLGIPPPTPSWGGMIAAGRESLYDHPHLVLVPGLFFFLTVLS 289 Query: 272 FNLIGDTMR 280 NLIGD R Sbjct: 290 LNLIGDWAR 298