BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0090.0027.p (410 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769419.1| hypothetical protein blr2779 [Bradyrhizobium ja... 592 e-167 ref|YP_004110322.1| L-carnitine dehydratase/bile acid-inducible ... 585 e-165 ref|YP_001990678.1| L-carnitine dehydratase/bile acid-inducible ... 573 e-161 ref|NP_946836.1| L-carnitine dehydratase/bile acid-inducible pro... 571 e-161 ref|YP_001204516.1| putative formyl-coenzyme A transferase [Brad... 551 e-154 >ref|NP_769419.1| hypothetical protein blr2779 [Bradyrhizobium japonicum USDA 110] dbj|BAC48044.1| blr2779 [Bradyrhizobium japonicum USDA 110] Length = 390 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 282/384 (73%), Positives = 320/384 (83%) Query: 12 IAADDEGNLTPSFDGLRVLDFSTTIAGPHCTRMLADMGAEVIKIEPAEGETMRTRPPVRN 71 +A E T +F GLRVLDFSTTIAGPHCTRMLADMGAEVIKIE GETMRTRPP+R Sbjct: 3 LADKHESTTTKAFAGLRVLDFSTTIAGPHCTRMLADMGAEVIKIETDGGETMRTRPPLRK 62 Query: 72 NCSTAFGQLNIGKNSLVLDLKSPAGVEAVRRLIATADVLVENFRPGVMRRLKLDYASVRD 131 CST FGQLN+GK S+VLDLKS G EA+ RL ATAD+LVENFRPGVM RL+LDY +R Sbjct: 63 GCSTVFGQLNVGKKSVVLDLKSEDGREAILRLAATADILVENFRPGVMHRLRLDYDRMRP 122 Query: 132 INPKLIFCSISGYGQTGPSAELPAYAPVIHAASGYEMAHLAYQPGRSRPDYCGIYHADVL 191 +NP+LI+CSISGYGQ+GPSAELPAYAPVIHAASGY+MAHLAYQPGR+RPDYCGIYHADV+ Sbjct: 123 VNPRLIYCSISGYGQSGPSAELPAYAPVIHAASGYDMAHLAYQPGRNRPDYCGIYHADVV 182 Query: 192 TGVYAFGAISAALYQRAASGKGQHIDVSMLESMLSLTLNELQWSQFEVKQTQRPMFGPIE 251 TG Y FGAI++ALYQR +G GQHIDVSMLESML+LTL ELQ SQF VK RPMFGP E Sbjct: 183 TGTYGFGAIASALYQRTVTGLGQHIDVSMLESMLTLTLIELQSSQFAVKPPPRPMFGPTE 242 Query: 252 TTDGYVMVAIASEKTFQNLMQVIGRPDWVSDPRFAKYSDRRDNWAGLMEGVEAWSRSVST 311 T +GYVM+ +ASEKTFQ LM VIGRPDW+SDPRF+ Y+ RR+NWA LM+GVEAWSR +ST Sbjct: 243 TANGYVMITVASEKTFQCLMGVIGRPDWISDPRFSAYAARRENWADLMDGVEAWSRQLST 302 Query: 312 QACLAALNEYGVPSSAYRTVREALADPQVAHRGALAEVADGGGSFKVLNLPFRMSGAAVG 371 +ACL AL GVP+SAYRTV EALADPQ+AHR AL+ V DGGGSF+VLNLPFRMSGA Sbjct: 303 EACLVALGAAGVPASAYRTVSEALADPQLAHRQALSSVEDGGGSFQVLNLPFRMSGADTT 362 Query: 372 ARKRMSTLGEHTLFYLKEIGLSED 395 + M+ LGEHT EIGL++D Sbjct: 363 PARAMAALGEHTGALRDEIGLADD 386 >ref|YP_004110322.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris DX-1] gb|ADU45589.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris DX-1] Length = 413 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 271/379 (71%), Positives = 324/379 (85%), Gaps = 1/379 (0%) Query: 26 GLRVLDFSTTIAGPHCTRMLADMGAEVIKIEPAEGETMRTRPPVRNNCSTAFGQLNIGKN 85 GLRVLDFSTTIAGPHCTRML+DMGAEVIKIE A+G+TMR RPPVR CSTAFGQLN+GK Sbjct: 35 GLRVLDFSTTIAGPHCTRMLSDMGAEVIKIEAADGDTMRNRPPVRGACSTAFGQLNVGKK 94 Query: 86 SLVLDLKSPAGVEAVRRLIATADVLVENFRPGVMRRLKLDYASVRDINPKLIFCSISGYG 145 S+VLDLKSPAG+EAV+RL+A+ADVLVENFRPGVM+RL++DYAS+R NP+LI+CSISGYG Sbjct: 95 SIVLDLKSPAGLEAVQRLVASADVLVENFRPGVMQRLQMDYASLRSFNPELIYCSISGYG 154 Query: 146 QTGPSAELPAYAPVIHAASGYEMAHLAYQPGRSRPDYCGIYHADVLTGVYAFGAISAALY 205 QTGPSAELPAYAP IHAASG+++AHLAYQPGR RPDYCGIY ADV++GVYA+GAI++ALY Sbjct: 155 QTGPSAELPAYAPAIHAASGFDLAHLAYQPGRDRPDYCGIYLADVVSGVYAYGAITSALY 214 Query: 206 QRAASGKGQHIDVSMLESMLSLTLNELQWSQFEVKQTQRPMFGPIETTDGYVMVAIASEK 265 QR SG+GQHIDVSMLESML+LTLNE+QWSQF V RP FGP+ET+DGYVM+A+ASEK Sbjct: 215 QRTRSGEGQHIDVSMLESMLTLTLNEMQWSQFPVTLPARPQFGPVETSDGYVMIAVASEK 274 Query: 266 TFQNLMQVIGRPDWVSDPRFAKYSDRRDNWAGLMEGVE-AWSRSVSTQACLAALNEYGVP 324 +F+N M RPD ++DPRF KY+DRR NW LM+ +E +WSR++++Q CLAAL+++GVP Sbjct: 275 SFRNFMLAAERPDLITDPRFEKYADRRLNWGELMDTIETSWSRTLTSQQCLAALDKFGVP 334 Query: 325 SSAYRTVREALADPQVAHRGALAEVADGGGSFKVLNLPFRMSGAAVGARKRMSTLGEHTL 384 SAYRTV EA+ADPQ AHR ALAEV D GSFKVLNLPFRMS A ++ LGEHT Sbjct: 335 CSAYRTVAEAMADPQTAHRQALAEVHDDAGSFKVLNLPFRMSAADPSPNPVVARLGEHTR 394 Query: 385 FYLKEIGLSEDQIAGFAAQ 403 L++ G S+D+I F A+ Sbjct: 395 LVLQQAGYSDDEIVRFGAR 413 >ref|YP_001990678.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris TIE-1] gb|ACF00203.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 270/403 (66%), Positives = 331/403 (82%), Gaps = 8/403 (1%) Query: 2 TKVEEALPTTIAADDEGNLTPSFDGLRVLDFSTTIAGPHCTRMLADMGAEVIKIEPAEGE 61 T+ ++ L TT A + DGLRVLDFSTTIAGPHCTRML+DMGAEVIKIE A+G+ Sbjct: 5 TRTQKPLATTANAR-------ALDGLRVLDFSTTIAGPHCTRMLSDMGAEVIKIEAADGD 57 Query: 62 TMRTRPPVRNNCSTAFGQLNIGKNSLVLDLKSPAGVEAVRRLIATADVLVENFRPGVMRR 121 TMR RPPVR CSTAFGQLN+GK S+VLDLKSP G+EAV+RL+A AD+LVENFRPGVM+R Sbjct: 58 TMRNRPPVREACSTAFGQLNVGKKSIVLDLKSPDGLEAVQRLVAGADILVENFRPGVMQR 117 Query: 122 LKLDYASVRDINPKLIFCSISGYGQTGPSAELPAYAPVIHAASGYEMAHLAYQPGRSRPD 181 L++DYAS+R NP+LI+CSISGYGQTGPSAELPAYAP IHAASG+++AHLAYQPGR RPD Sbjct: 118 LQMDYASLRGFNPELIYCSISGYGQTGPSAELPAYAPAIHAASGFDLAHLAYQPGRDRPD 177 Query: 182 YCGIYHADVLTGVYAFGAISAALYQRAASGKGQHIDVSMLESMLSLTLNELQWSQFEVKQ 241 YCGIY ADV++G+YA+GAI++ALYQR +G+GQHIDVSMLE+ML+LTLNE+QWSQF V Sbjct: 178 YCGIYLADVVSGIYAYGAITSALYQRVRTGEGQHIDVSMLEAMLTLTLNEMQWSQFPVTL 237 Query: 242 TQRPMFGPIETTDGYVMVAIASEKTFQNLMQVIGRPDWVSDPRFAKYSDRRDNWAGLMEG 301 RP FGP+ET+DGYVM+A+ASEK+F++ M RPD ++DPRF KY+DRR W LM+ Sbjct: 238 PGRPQFGPVETSDGYVMIAVASEKSFRSFMLAAERPDLITDPRFEKYADRRLAWGELMDT 297 Query: 302 VE-AWSRSVSTQACLAALNEYGVPSSAYRTVREALADPQVAHRGALAEVADGGGSFKVLN 360 +E +WSR ++++ CLAAL+++GVP SAYRTV EA+ADPQ AHR ALAEV D GSFKVLN Sbjct: 298 IETSWSRKLTSKQCLAALDKFGVPCSAYRTVAEAMADPQTAHRQALAEVHDDAGSFKVLN 357 Query: 361 LPFRMSGAAVGARKRMSTLGEHTLFYLKEIGLSEDQIAGFAAQ 403 LPFRMS A R++ LGEHT L++ G S++ IA F A+ Sbjct: 358 LPFRMSAANPSPNPRVARLGEHTKAVLQQAGYSDEDIAQFGAR 400 >ref|NP_946836.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris CGA009] emb|CAE26930.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris CGA009] Length = 400 Score = 571 bits (1471), Expect = e-161, Method: Compositional matrix adjust. Identities = 269/403 (66%), Positives = 330/403 (81%), Gaps = 8/403 (1%) Query: 2 TKVEEALPTTIAADDEGNLTPSFDGLRVLDFSTTIAGPHCTRMLADMGAEVIKIEPAEGE 61 T+ ++ L TT A + DGLRVLDFSTTIAGPHCTRML+DMGAEVIKIE A+G+ Sbjct: 5 TRTQKPLATTANAR-------ALDGLRVLDFSTTIAGPHCTRMLSDMGAEVIKIEAADGD 57 Query: 62 TMRTRPPVRNNCSTAFGQLNIGKNSLVLDLKSPAGVEAVRRLIATADVLVENFRPGVMRR 121 TMR RPPVR CSTAFGQLN+GK S+VLDLKSP G+EAV+RL+A AD+LVENFRP VM+R Sbjct: 58 TMRNRPPVREACSTAFGQLNVGKKSIVLDLKSPDGLEAVQRLVAGADILVENFRPSVMQR 117 Query: 122 LKLDYASVRDINPKLIFCSISGYGQTGPSAELPAYAPVIHAASGYEMAHLAYQPGRSRPD 181 L++DYAS+R NP+LI+CSISGYGQTGPSAELPAYAP IHAASG+++AHLAYQPGR RPD Sbjct: 118 LQMDYASLRGFNPELIYCSISGYGQTGPSAELPAYAPAIHAASGFDLAHLAYQPGRDRPD 177 Query: 182 YCGIYHADVLTGVYAFGAISAALYQRAASGKGQHIDVSMLESMLSLTLNELQWSQFEVKQ 241 YCGIY ADV++G+YA+GAI++ALYQR +G+GQHIDVSMLE+ML+LTLNE+QWSQF V Sbjct: 178 YCGIYLADVVSGIYAYGAITSALYQRVRTGEGQHIDVSMLEAMLTLTLNEMQWSQFPVTL 237 Query: 242 TQRPMFGPIETTDGYVMVAIASEKTFQNLMQVIGRPDWVSDPRFAKYSDRRDNWAGLMEG 301 RP FGP+ET+DGYVM+A+ASEK+F++ M RPD ++DPRF KY+DRR W LM+ Sbjct: 238 PGRPQFGPVETSDGYVMIAVASEKSFRSFMLAAERPDLITDPRFEKYADRRLAWGELMDT 297 Query: 302 VE-AWSRSVSTQACLAALNEYGVPSSAYRTVREALADPQVAHRGALAEVADGGGSFKVLN 360 +E +WSR ++++ CLAAL+++GVP SAYRTV EA+ADPQ AHR ALAEV D GSFKVLN Sbjct: 298 IETSWSRKLTSKQCLAALDKFGVPCSAYRTVAEAMADPQTAHRQALAEVHDDAGSFKVLN 357 Query: 361 LPFRMSGAAVGARKRMSTLGEHTLFYLKEIGLSEDQIAGFAAQ 403 LPFRMS A R++ LGEHT L++ G S++ IA F A+ Sbjct: 358 LPFRMSAANPSPNPRVARLGEHTKAVLQQAGYSDEDIARFGAR 400 >ref|YP_001204516.1| putative formyl-coenzyme A transferase [Bradyrhizobium sp. ORS 278] emb|CAL76279.1| putative formyl-coenzyme A transferase [Bradyrhizobium sp. ORS 278] Length = 355 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/346 (76%), Positives = 294/346 (84%) Query: 44 MLADMGAEVIKIEPAEGETMRTRPPVRNNCSTAFGQLNIGKNSLVLDLKSPAGVEAVRRL 103 MLADMGAEVIKIE AEGETMRTRPP+R+ CSTAFGQLN+GK S+VLDLKS GV+AV RL Sbjct: 1 MLADMGAEVIKIESAEGETMRTRPPMRHGCSTAFGQLNVGKKSVVLDLKSREGVDAVCRL 60 Query: 104 IATADVLVENFRPGVMRRLKLDYASVRDINPKLIFCSISGYGQTGPSAELPAYAPVIHAA 163 +A ADVLVENFRPGVM+RL LDYA++ NP+LI+CSISGYGQTGPSAELPAYAPVIHAA Sbjct: 61 VADADVLVENFRPGVMQRLGLDYAALSARNPRLIYCSISGYGQTGPSAELPAYAPVIHAA 120 Query: 164 SGYEMAHLAYQPGRSRPDYCGIYHADVLTGVYAFGAISAALYQRAASGKGQHIDVSMLES 223 SGY+MAHLAYQPGR RPDYCGIYHADV+TG YAFGAI++ALYQR +G+GQHID SMLES Sbjct: 121 SGYDMAHLAYQPGRDRPDYCGIYHADVVTGTYAFGAIASALYQRERTGRGQHIDCSMLES 180 Query: 224 MLSLTLNELQWSQFEVKQTQRPMFGPIETTDGYVMVAIASEKTFQNLMQVIGRPDWVSDP 283 MLSLTLNE+QWSQF V Q RP FGP DGYVM+AIASEKTFQNLM VIG P+W SD Sbjct: 181 MLSLTLNEIQWSQFPVVQPSRPTFGPAACRDGYVMIAIASEKTFQNLMSVIGHPEWTSDA 240 Query: 284 RFAKYSDRRDNWAGLMEGVEAWSRSVSTQACLAALNEYGVPSSAYRTVREALADPQVAHR 343 RFA+YSDRR NW LM+GVEAWS +S C+AALN GVPSSAYR+V EALADPQ+AHR Sbjct: 241 RFARYSDRRANWGALMDGVEAWSGRLSVADCVAALNSGGVPSSAYRSVAEALADPQIAHR 300 Query: 344 GALAEVADGGGSFKVLNLPFRMSGAAVGARKRMSTLGEHTLFYLKE 389 GALA+V D GSFKV+NLPFRMS A V A R ++LGEHT L+E Sbjct: 301 GALADVEDDAGSFKVVNLPFRMSEAKVAAGPRAASLGEHTAEVLRE 346