BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0090.0024.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_579101.1| hypothetical protein Nham_3965 [Nitrobacter ham... 629 e-178 ref|NP_768888.1| hypothetical protein blr2248 [Bradyrhizobium ja... 626 e-177 ref|ZP_01044842.1| hypothetical protein NB311A_06853 [Nitrobacte... 612 e-173 ref|YP_001204433.1| hypothetical protein BRADO2369 [Bradyrhizobi... 582 e-164 ref|YP_780426.1| hypothetical protein RPE_1496 [Rhodopseudomonas... 562 e-158 >ref|YP_579101.1| hypothetical protein Nham_3965 [Nitrobacter hamburgensis X14] gb|ABE64641.1| peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family [Nitrobacter hamburgensis X14] Length = 520 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 356/546 (65%), Positives = 421/546 (77%), Gaps = 34/546 (6%) Query: 1 MVNRTTTAQITGAMRRWGRPAFVTFAAMVTVASLTGGVAAKEQRPSAAVEATAPRTAGEP 60 MVNR T+A+ T A+RRWG V A M + + AK+ R + E TAPR AGEP Sbjct: 1 MVNRLTSAKSTLALRRWGNRVVVMLAGMAALIAPISDATAKQARRAQPAETTAPREAGEP 60 Query: 61 IMAIVSIKAQKVTFYDAEGWIYRAPVSSGVKGRETPAGVFALIEKDKDHHSTLYDDAWMP 120 IMAIVS+K+Q+VTFYDAEGWI RAPVS+G+K RETPAGVFA+IEKDKDHHST+YDDAWMP Sbjct: 61 IMAIVSLKSQQVTFYDAEGWILRAPVSTGIKERETPAGVFAIIEKDKDHHSTMYDDAWMP 120 Query: 121 NMQRITWNGIALHGGPLPGYAASHGCVRMPYDFAEKLFDKTRIGMRVIIAPNDPAPVDFT 180 NMQRITWNG+ALHGGPLPGYAASHGCVRMPY FAEKLFDKTRIGMRVII+PND APVDF+ Sbjct: 121 NMQRITWNGLALHGGPLPGYAASHGCVRMPYGFAEKLFDKTRIGMRVIISPNDAAPVDFS 180 Query: 181 HP--ALFVPNAQAIAAAPAHAEKLTREAADAAKAADEAKKASIAASKEAALFTPASLRKL 238 HP +LF PNA+ I AA A AE L REA DAA ADEA+K + A++E+A ASLRKL Sbjct: 181 HPTLSLFAPNAEIITAASAKAEALAREAMDAATTADEARKTATIAARESAPLA-ASLRKL 239 Query: 239 QQMKTRADAAVALADKTLAAAKTDQAKARAEDLKQKAVAKAAEATTQFEAAQGDARPKLD 298 ++ K RADA + ADK LAAAKTDQA+A+AED +QKA AKAAE TQF+ A+ DA KLD Sbjct: 240 ERFKARADAELVSADKALAAAKTDQARAKAEDRQQKAAAKAAELGTQFDTAKADATSKLD 299 Query: 299 AAAAAKGAAKAAETKKADTQKAATEAKLALEPVSVYISRATQKLYVRRNTHKPWADGG-E 357 AA+AAK AAK A+TK ADT KAA +AKLALEPVS+YISRAT+ LYVRRNTHKP DGG E Sbjct: 300 AASAAKEAAKTAQTKNADTAKAALDAKLALEPVSIYISRATRTLYVRRNTHKPAPDGGGE 359 Query: 358 VFDSSIEVPVTIRDPDKPIGTHIYTAMARNDAGGLRWTQVTIDDGDHAKDALDRITIPQD 417 VFD++IEV VTIRDP KP+GTH++TA+ARNDAG LRWT VTI++GD AK+ALDRITIP++ Sbjct: 360 VFDATIEVSVTIRDPGKPLGTHVFTAVARNDAG-LRWTAVTIENGDGAKNALDRITIPKE 418 Query: 418 VLDRIAPTAVARSSIIISDEPLSAETNYRTEFVAVLSNQPQGGFITRKPTRPMMTDDMV- 476 VLDRIAPTA+ +SSI++SDEPLS ETNYRTEFVAVLS+QPQGGFITR+P+ +M DD Sbjct: 419 VLDRIAPTALPQSSIVVSDEPLSEETNYRTEFVAVLSDQPQGGFITREPSEVLMADDNGW 478 Query: 477 ---ASRDEDGFGFFYQRSWNPQAPTNYGSPQYGAPQFGSPQIYGNPQAANPRRRGGQYYW 533 +++D FGFF+ P+ PT PQ +N RR G Q++ Sbjct: 479 GDGNQQEDDSFGFFF-----PRNPT--------------------PQPSNARRGGRQFFP 513 Query: 534 QSQQDW 539 Q+ W Sbjct: 514 PLQRGW 519 >ref|NP_768888.1| hypothetical protein blr2248 [Bradyrhizobium japonicum USDA 110] dbj|BAC47513.1| blr2248 [Bradyrhizobium japonicum USDA 110] Length = 520 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 370/540 (68%), Positives = 419/540 (77%), Gaps = 30/540 (5%) Query: 1 MVNRTTTAQITGAMRRWGRPAFVTFAAMVTVASLTGGVAAKEQRPSAAVEATAPRTAGEP 60 M NR TTAQ T AMRRW P + A+ +A + AAK+ R EA APR AGEP Sbjct: 1 MKNRLTTAQSTLAMRRWAPPGRIALTALAVLAVVNPATAAKQAR--QPTEAVAPREAGEP 58 Query: 61 IMAIVSIKAQKVTFYDAEGWIYRAPVSSGVKGRETPAGVFALIEKDKDHHSTLYDDAWMP 120 IMAIVSIK+Q+VTFYDA+GWI RAPVS+G GRETPAGVFA++EKDKDHHST+YDDAWMP Sbjct: 59 IMAIVSIKSQQVTFYDADGWILRAPVSTGTTGRETPAGVFAIVEKDKDHHSTMYDDAWMP 118 Query: 121 NMQRITWNGIALHGGPLPGYAASHGCVRMPYDFAEKLFDKTRIGMRVIIAPNDPAPVDFT 180 NMQRITWNGIALHGGPLPGYAASHGCVRMP+ FAE LFDKT IGMRVII+PND APVDF Sbjct: 119 NMQRITWNGIALHGGPLPGYAASHGCVRMPFGFAEGLFDKTNIGMRVIISPNDAAPVDFN 178 Query: 181 HPALFVPNAQAIAAAPAHAEKLTREAADAAKAADEAKKASIAASKEAALFTPASLRKLQQ 240 HP+LFVP +AIAA P+ A+KL+ EA +A +AADEAKKA+ A+KEAA PASLRKL+Q Sbjct: 179 HPSLFVPKREAIAAVPSRADKLSAEAEEATRAADEAKKAAAIAAKEAASL-PASLRKLEQ 237 Query: 241 MKTRADAAVALADKTLAAAKTDQAKARAEDLKQKAVAKAAEATTQFEAAQGDARPKLDAA 300 K RADA +A ADK+LAAAKTDQA+A+AE+LKQKA KAA+A +Q + A+ A+PK DA Sbjct: 238 QKARADAELAFADKSLAAAKTDQARAKAEELKQKAATKAADAASQLDTAKAAAQPKRDAV 297 Query: 301 AAAKGAAKAAETKKADTQKAATEAKLALEPVSVYISRATQKLYVRRNTHKPWAD-GGEVF 359 AA K AAKAA TKKA+ KAAT+AKLALEPVSVYISRATQKLYVRRNTHKP D GGEVF Sbjct: 298 AATKEAAKAAATKKAEIVKAATDAKLALEPVSVYISRATQKLYVRRNTHKPAPDGGGEVF 357 Query: 360 DSSIEVPVTIRDPDKPIGTHIYTAMARNDAGGLRWTQVTIDDGDHAKDALDRITIPQDVL 419 D+SIEVPVTIR+PD+P+GTHI+TAMA+ND GLRW+ VTI+ GD AKDALDRITIPQDV Sbjct: 358 DTSIEVPVTIRNPDQPLGTHIFTAMAKNDT-GLRWSVVTIESGDDAKDALDRITIPQDVW 416 Query: 420 DRIAPTAVARSSIIISDEPLSAETNYRTEFVAVLSNQPQGGFITRKPTRPMMTDDMVASR 479 DRIAPTA+ RSSIIISDEPLS+ETNYRTEFVAVLSN PQGGFITRKPT P M +AS Sbjct: 417 DRIAPTALPRSSIIISDEPLSSETNYRTEFVAVLSNHPQGGFITRKPTAPPMD---IASD 473 Query: 480 DEDGFGFFYQRSWNPQAPTNYGSPQYGAPQFGSPQIYGNPQAANPRR-RGGQY-YWQSQQ 537 D SW+ Q NPQ NPRR RGGQY Y+Q Q Sbjct: 474 D----------SWDNGGNGFGFFFQRDP----------NPQPVNPRRQRGGQYPYYQPAQ 513 >ref|ZP_01044842.1| hypothetical protein NB311A_06853 [Nitrobacter sp. Nb-311A] gb|EAQ36847.1| hypothetical protein NB311A_06853 [Nitrobacter sp. Nb-311A] Length = 506 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 351/526 (66%), Positives = 415/526 (78%), Gaps = 34/526 (6%) Query: 14 MRRWGRPAFVTFAAMVTVASLTGGVAAKEQRPSAAVEATAPRTAGEPIMAIVSIKAQKVT 73 M WGR A V FAA+ T+ S AAK+ R + E TAPR AGEPIMAIVSIK+Q+VT Sbjct: 1 MSHWGRSAVVMFAAIATLISPIAEAAAKQARRAQPAETTAPREAGEPIMAIVSIKSQQVT 60 Query: 74 FYDAEGWIYRAPVSSGVKGRETPAGVFALIEKDKDHHSTLYDDAWMPNMQRITWNGIALH 133 FYDAEGWI RAPVS+G+KGRETPAGVFA++EKDKDHHST+YDDAWMPNM RITWNG+ALH Sbjct: 61 FYDAEGWILRAPVSTGIKGRETPAGVFAIVEKDKDHHSTMYDDAWMPNMLRITWNGLALH 120 Query: 134 GGPLPGYAASHGCVRMPYDFAEKLFDKTRIGMRVIIAPNDPAPVDFTHP--ALFVPNAQA 191 GGPLPG+AASHGCVRMPY FAEKLFDKTRIGMRVII+P D APV+F+HP +L VPNA Sbjct: 121 GGPLPGHAASHGCVRMPYGFAEKLFDKTRIGMRVIISPVDAAPVNFSHPTLSLIVPNADI 180 Query: 192 IAAAPAHAEKLTREAADAAKAADEAKKASIAASKEAALFTPASLRKLQQMKTRADAAVAL 251 +A APA+AE+L REAA+AAKAADEAKK + AA++E+A ASLRKL++ K RA AA+ Sbjct: 181 VANAPANAERLAREAAEAAKAADEAKKTAAAAARESAPLA-ASLRKLERSKARAGAALLS 239 Query: 252 ADKTLAAAKTDQAKARAEDLKQKAVAKAAEATTQFEAAQGDARPKLDAAAAAKGAAKAAE 311 AD+ LAAAKTDQA+A+AED KQKAVAKAAE T E A+ DA+ KLDAA+ AK AA+ A+ Sbjct: 240 ADRALAAAKTDQARAKAEDRKQKAVAKAAELDTLLETAKADAKSKLDAASIAKEAARTAQ 299 Query: 312 TKKADTQKAATEAKLALEPVSVYISRATQKLYVRRNTHKPWAD-GGEVFDSSIEVPVTIR 370 TKK D KAA +AKLA+EP S+YISRATQ LYVRRNTHKP D GGEVFD++IEVPVTIR Sbjct: 300 TKKGDIAKAALDAKLAIEPFSIYISRATQMLYVRRNTHKPAPDGGGEVFDATIEVPVTIR 359 Query: 371 DPDKPIGTHIYTAMARNDAGGLRWTQVTIDDGDHAKDALDRITIPQDVLDRIAPTAVARS 430 DP KP+GTH++TA+ARND G LRWT VTI++GD AK+ALDRITIP++VLDRIAP A+ RS Sbjct: 360 DPGKPLGTHVFTAVARND-GSLRWTAVTIENGDDAKNALDRITIPKEVLDRIAPAALPRS 418 Query: 431 SIIISDEPLSAETNYRTEFVAVLSNQPQGGFITRKPTRPMMTDDMVASRD----EDGFGF 486 SI++SDEPLS ETNYRTEFVAVLS+QPQGGFITRKP++ ++ DD S +DGFGF Sbjct: 419 SIVVSDEPLSKETNYRTEFVAVLSDQPQGGFITRKPSQVLVADDGGWSNGSPQADDGFGF 478 Query: 487 FYQRSWNPQAPTNYGSPQYGAPQFGSPQIYGNPQAANPRRRGGQYY 532 F+QRS P P+ +N RR GGQ++ Sbjct: 479 FFQRS-----PI--------------------PRPSNTRRGGGQFF 499 >ref|YP_001204433.1| hypothetical protein BRADO2369 [Bradyrhizobium sp. ORS 278] emb|CAL76196.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 453 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 331/453 (73%), Positives = 376/453 (83%), Gaps = 12/453 (2%) Query: 62 MAIVSIKAQKVTFYDAEGWIYRAPVSSGVKGRETPAGVFALIEKDKDHHSTLYDDAWMPN 121 MAIVSIK QKVTFYD+EGWI+RAPVS+GV GRETPAGVFA+IEKDKDHHSTLYDDAWMPN Sbjct: 1 MAIVSIKTQKVTFYDSEGWIWRAPVSTGVSGRETPAGVFAIIEKDKDHHSTLYDDAWMPN 60 Query: 122 MQRITWNGIALHGGPLPGYAASHGCVRMPYDFAEKLFDKTRIGMRVIIAPNDPAPVDFTH 181 MQRITWNG+ALHGGPLPGYAASHGCVRMPY FAEKLFD+T IGMRVIIAP DP PV+F+H Sbjct: 61 MQRITWNGVALHGGPLPGYAASHGCVRMPYGFAEKLFDRTWIGMRVIIAPGDPVPVEFSH 120 Query: 182 PALFVPNAQAIAAAPAHAEKLTREAADAAKAADEAKKASIAASKEAALFTPASLRKLQQM 241 PALF P+A+A+AAAP+ A L REA DAA+ ADEAK A+ AA ++A A+LRKL+Q Sbjct: 121 PALFNPSAEALAAAPSRAATLGREAEDAARIADEAKTAAAAAERDAKSLK-AALRKLEQA 179 Query: 242 KTRADAAVALADKTLAAAKTDQAKARAEDLKQKAVAKAAEATTQFEAAQGDARPKLDAAA 301 K RA+A + ADK LAAAKTDQAKA+AE+ +QKA KA EA QFE A+ D KL AAA Sbjct: 180 KARAEAELKSADKKLAAAKTDQAKAQAEEARQKADTKATEAAAQFETAKTDTAAKLAAAA 239 Query: 302 AAKGAAKAAETKKADTQKAATEAKLALEPVSVYISRATQKLYVRRNTHKPWAD-GGEVFD 360 K AAKAA KK++T KAATEAKLA EPVSVYISR+TQ LYVRRNTHKP D GGEVFD Sbjct: 240 TTKDAAKAAAAKKSETSKAATEAKLAGEPVSVYISRSTQMLYVRRNTHKPAPDGGGEVFD 299 Query: 361 SSIEVPVTIRDPDKPIGTHIYTAMARNDAGGLRWTQVTIDDGDHAKDALDRITIPQDVLD 420 +SIE PVTIRDPD+P+GTHI+TA+A+N A GLRWT VTIDDGD AKDALDRITIP+DVL Sbjct: 300 TSIESPVTIRDPDRPLGTHIFTAVAQNGA-GLRWTAVTIDDGDDAKDALDRITIPKDVLA 358 Query: 421 RIAPTAVARSSIIISDEPLSAETNYRTEFVAVLSNQPQGGFITRKPTRPMMTDDMVASRD 480 RIAPTAV RSSII+SDEPLS+ETNYRTEFVAVLSNQPQGGF+TR+PT T+ +AS D Sbjct: 359 RIAPTAVPRSSIIVSDEPLSSETNYRTEFVAVLSNQPQGGFVTRRPT----TNVDMASDD 414 Query: 481 --EDGFGFFYQRSWN--PQAPT-NYGSPQYGAP 508 ++GFG F+QRSW+ P AP+ G P Y P Sbjct: 415 GSDEGFGNFFQRSWDGQPMAPSRRRGPPVYYRP 447 >ref|YP_780426.1| hypothetical protein RPE_1496 [Rhodopseudomonas palustris BisA53] gb|ABJ05446.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 503 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 336/490 (68%), Positives = 391/490 (79%), Gaps = 5/490 (1%) Query: 1 MVNRTTTAQITGAMRRWGRPAFVTFAAMVTVASLTGGVAAKEQRPSAAVEATAPRTAGEP 60 M + TTA MRR A VT +A G AA ++ A +EATAPR AGEP Sbjct: 1 MGKQLTTAHGGWVMRRLKTSAVVT--LAAMLALALPGDAAAKRARPAPIEATAPREAGEP 58 Query: 61 IMAIVSIKAQKVTFYDAEGWIYRAPVSSGVKGRETPAGVFALIEKDKDHHSTLYDDAWMP 120 IMAIVSI+AQKVT YDA+GWI RAPVS+G GRETPAG+FA++EKDKDH ST+YDDAWMP Sbjct: 59 IMAIVSIEAQKVTLYDADGWILRAPVSTGTTGRETPAGIFAIVEKDKDHRSTMYDDAWMP 118 Query: 121 NMQRITWNGIALHGGPLPGYAASHGCVRMPYDFAEKLFDKTRIGMRVIIAPNDPAPVDFT 180 NMQRITWNGIALHGGPLPGYAASHGCVRMPYDFAEKLFDKTRIGMRVIIAP+D APV+F Sbjct: 119 NMQRITWNGIALHGGPLPGYAASHGCVRMPYDFAEKLFDKTRIGMRVIIAPHDAAPVEFA 178 Query: 181 HPALFVPNAQAIAAAPAHAEKLTREAADAAKAADEAKKASIAASKEAALFTPASLRKLQQ 240 HP+LF P +A+AAAPA AE L REAA+A K A E K+A+ A +EAA ASLRKL++ Sbjct: 179 HPSLFSPKPEALAAAPARAETLGREAAEAVKTAAETKQAAAAEKREAASLA-ASLRKLER 237 Query: 241 MKTRADAAVALADKTLAAAKTDQAKARAEDLKQKAVAKAAEATTQFEAAQGDARPKLDAA 300 +K RADAA+ ADK LAAAKTD+AK RA++ +QKA AAEA TQ +AA+ DA K AA Sbjct: 238 LKARADAALRSADKALAAAKTDEAKTRADERQQKASQNAAEAATQLDAAKADAEAKRVAA 297 Query: 301 AAAKGAAKAAETKKADTQKAATEAKLALEPVSVYISRATQKLYVRRNTHKPWADGGEVFD 360 AA AAKAAE K + KAA EAKLALEPVS+YISRATQKLYVRRNT KPW DGGEVFD Sbjct: 298 LAATDAAKAAEANKVNAAKAANEAKLALEPVSIYISRATQKLYVRRNTRKPWPDGGEVFD 357 Query: 361 SSIEVPVTIRDPDKPIGTHIYTAMARNDAGGLRWTQVTIDDGDHAKDALDRITIPQDVLD 420 ++IE+PVTI++PD+PIGTH++TAMARN+A GLRW+ VTID+GD AK ALDRIT P++ L+ Sbjct: 358 ATIELPVTIQNPDRPIGTHVFTAMARNEA-GLRWSAVTIDNGDDAKTALDRITFPREALE 416 Query: 421 RIAPTAVARSSIIISDEPLSAETNYRTEFVAVLSNQPQGGFITRKPTRPMMTDDMVASRD 480 RIAPTAV RSSII+SDEPLS ETNYRTEFVAVLS+QPQGGF+TR+PT P + D D Sbjct: 417 RIAPTAVPRSSIIVSDEPLSKETNYRTEFVAVLSDQPQGGFVTRQPTPPAIVADR-DDWD 475 Query: 481 EDGFGFFYQR 490 ++GFG F+QR Sbjct: 476 DNGFGSFFQR 485