BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0090.0021.p         (193 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769395.1| hypothetical protein blr2755 [Bradyrhizobium ja...   194   8e-48
ref|YP_001204492.1| putative signal peptide [Bradyrhizobium sp. ...   186   2e-45
ref|YP_001238823.1| hypothetical protein BBta_2784 [Bradyrhizobi...   182   3e-44
ref|YP_575770.1| PRC-barrel [Nitrobacter hamburgensis X14] >gi|9...   178   4e-43
ref|ZP_01044467.1| hypothetical protein NB311A_03034 [Nitrobacte...   175   3e-42

>ref|NP_769395.1| hypothetical protein blr2755 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48020.1| blr2755 [Bradyrhizobium japonicum USDA 110]
          Length = 126

 Score =  194 bits (492), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 90/116 (77%), Positives = 105/116 (90%)

Query: 73  KEPSPPPSVTVIGARDAHGILGRDVRSSANENMGRIVDVIVDRDGKVRAAVIDFGGFLGV 132
           K+ +PPPSVT+IGA DAHG+LGRDV S+ANE+MGRIVDVIVDR G VRAAVIDFGGFLGV
Sbjct: 6   KDAAPPPSVTIIGASDAHGVLGRDVLSAANEDMGRIVDVIVDRSGHVRAAVIDFGGFLGV 65

Query: 133 GSRKIVVDWNALRFAGVSSKSDSITLDLNKQQVSAAPEYKEDTPLIVLGAAGSLHP 188
           GSRKIVVDWNA+RF  +++K DSITL+L K QV+AAPEYKEDTP++VLGA+GSL P
Sbjct: 66  GSRKIVVDWNAMRFGKIANKKDSITLELTKAQVAAAPEYKEDTPMVVLGASGSLQP 121


>ref|YP_001204492.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL76255.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 169

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 113/139 (81%), Gaps = 1/139 (0%)

Query: 55  AAQAAPKEQAKEPSKESSKEPSPPPSVTVIGARDAHGILGRDVRSSANENMGRIVDVIVD 114
           A QA+P    KE +   +KEP+PPPSVT++GARDAHG+LGRDVRSS  E+MG IVDVIVD
Sbjct: 32  AQQASPIPATKE-TPAPAKEPAPPPSVTILGARDAHGVLGRDVRSSTGEDMGHIVDVIVD 90

Query: 115 RDGKVRAAVIDFGGFLGVGSRKIVVDWNALRFAGVSSKSDSITLDLNKQQVSAAPEYKED 174
             G VRAAVIDFGGFLGVGSRKIVVDW AL F  ++ KSD +TLDL K+QV AAPEYKED
Sbjct: 91  LTGTVRAAVIDFGGFLGVGSRKIVVDWTALDFKHIADKSDQVTLDLTKEQVKAAPEYKED 150

Query: 175 TPLIVLGAAGSLHPWDYEH 193
            P++VLGAAG L PWD++H
Sbjct: 151 KPVVVLGAAGKLSPWDFDH 169


>ref|YP_001238823.1| hypothetical protein BBta_2784 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34917.1| hypothetical protein BBta_2784 [Bradyrhizobium sp. BTAi1]
          Length = 144

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 96/114 (84%)

Query: 80  SVTVIGARDAHGILGRDVRSSANENMGRIVDVIVDRDGKVRAAVIDFGGFLGVGSRKIVV 139
           SVT++GARDAHG+LGRDVRSS  E+MG IVDVIVD  G VRAAVIDFGGFLGVGSRKIVV
Sbjct: 31  SVTILGARDAHGVLGRDVRSSTGEDMGHIVDVIVDLTGTVRAAVIDFGGFLGVGSRKIVV 90

Query: 140 DWNALRFAGVSSKSDSITLDLNKQQVSAAPEYKEDTPLIVLGAAGSLHPWDYEH 193
           DW AL F  ++ KSD +TLDL K+QV AAPEYKED P++VLGAAG L PW ++H
Sbjct: 91  DWTALDFKHIADKSDQVTLDLTKEQVKAAPEYKEDKPVVVLGAAGKLSPWIFDH 144


>ref|YP_575770.1| PRC-barrel [Nitrobacter hamburgensis X14]
 gb|ABE61310.1| PRC-barrel [Nitrobacter hamburgensis X14]
          Length = 169

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/184 (53%), Positives = 117/184 (63%), Gaps = 26/184 (14%)

Query: 8   MLVAAALLTCAGVRAADDEAPAPTPSPPPAAQAPPATSTPPATPAPPAAQAAPKEQAKEP 67
           +L  A L+  A    ADD A          +QA PA S PP    P              
Sbjct: 10  VLSMAVLVFAATQVMADDTA---------QSQADPAPSNPPVAAKP-------------- 46

Query: 68  SKESSKEPSPPPSVTVIGARDAHGILGRDVRSSANENMGRIVDVIVDRDGKVRAAVIDFG 127
              S    +PPPS+TVI   DAHG+LGRDVRS + +NMGRIV+VIVDR G VRAAVIDFG
Sbjct: 47  ---SGGTTAPPPSITVISPADAHGVLGRDVRSMSGQNMGRIVEVIVDRAGVVRAAVIDFG 103

Query: 128 GFLGVGSRKIVVDWNALRFAGVSSKSDSITLDLNKQQVSAAPEYKEDTPLIVLGAAGSLH 187
           GFLGVGSRKI VDWNALRF GV   +DSI+L+L + QV AAPEYKE  P++VLGA+G+L 
Sbjct: 104 GFLGVGSRKIAVDWNALRFGGVKGTNDSISLELTQDQVKAAPEYKEGAPVVVLGASGTLQ 163

Query: 188 PWDY 191
           P ++
Sbjct: 164 PLNF 167


>ref|ZP_01044467.1| hypothetical protein NB311A_03034 [Nitrobacter sp. Nb-311A]
 gb|EAQ37248.1| hypothetical protein NB311A_03034 [Nitrobacter sp. Nb-311A]
          Length = 148

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 100/120 (83%)

Query: 72  SKEPSPPPSVTVIGARDAHGILGRDVRSSANENMGRIVDVIVDRDGKVRAAVIDFGGFLG 131
           S E + PPS+TVI   DAHG+LGRDVRS++ +NMGR+V+VIVDR G VRAAVIDFGGFLG
Sbjct: 27  SGETTAPPSITVIDPADAHGVLGRDVRSASGQNMGRVVEVIVDRAGAVRAAVIDFGGFLG 86

Query: 132 VGSRKIVVDWNALRFAGVSSKSDSITLDLNKQQVSAAPEYKEDTPLIVLGAAGSLHPWDY 191
           VGSRKIVVDWNALRF+GV   +DSI+L L + QV AAPEYKE  P++VLGA+G+L P ++
Sbjct: 87  VGSRKIVVDWNALRFSGVKGATDSISLALTQDQVKAAPEYKEGAPVVVLGASGTLQPLNF 146