BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0089.0005.p (566 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772107.1| hypothetical protein blr5467 [Bradyrhizobium ja... 756 0.0 ref|ZP_07027015.1| type I secretion outer membrane protein, TolC... 617 e-174 ref|YP_002289025.1| type I secretion outer membrane protein, Tol... 613 e-173 ref|ZP_08629861.1| agglutination protein [Bradyrhizobiaceae bact... 550 e-154 ref|YP_485252.1| Type I secretion outer membrane protein, TolC [... 493 e-137 >ref|NP_772107.1| hypothetical protein blr5467 [Bradyrhizobium japonicum USDA 110] dbj|BAC50732.1| blr5467 [Bradyrhizobium japonicum USDA 110] Length = 572 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/563 (68%), Positives = 450/563 (79%), Gaps = 14/563 (2%) Query: 1 MKSAYTVIACLCLAATPACAEVFSINDALRQAMQTNPGIGEASANRRATESELRQTQSTL 60 +K + A + A AE FSINDAL+QA++TNPG+GEASANRRATESELRQTQSTL Sbjct: 17 LKYIFVFTALAVVPCGGALAEPFSINDALKQAVRTNPGVGEASANRRATESELRQTQSTL 76 Query: 61 LPQVRIDASYGPEKFDQSPGFITPNIQAAPTVGSGPWRNGSQESVVVRQLLWDGFSSIYD 120 LPQVR++A +GPEKFDQS T P VG+G WRNGSQESVVVRQ+L+DGF+SI+D Sbjct: 77 LPQVRVEARWGPEKFDQSAAVSTGTALPVPIVGNGSWRNGSQESVVVRQILFDGFASIHD 136 Query: 121 VWRQTARVNAAASRVKERTELLALDAAEGYIDVTRYMRLVSLAQQNVANHEKIFSNVNSR 180 +WRQTARVNAAA RV+ERTEL+ALDAAE Y+DV RY+RLV+L++QNV HEKIFSNVN+R Sbjct: 137 IWRQTARVNAAAFRVRERTELIALDAAEAYVDVVRYLRLVTLSEQNVVTHEKIFSNVNTR 196 Query: 181 FSGGRAGEGDLEQARERVEAARAALAEFQRSLDDARAKYRKTVGLEPINVRFPAPLAGLP 240 FSGGRAGEGDLEQARERVE ARA LAEF+RSL+++RA++RK VGLEPIN+RFP PL GLP Sbjct: 197 FSGGRAGEGDLEQARERVENARATLAEFRRSLEESRARFRKVVGLEPINLRFPGPLGGLP 256 Query: 241 HSRDEALATTLRFNSTIAAAQSDADAAKHAFKATDGTFGPKFYLEGRATHYDNSYPYVAA 300 +RDEALATT+RFN TI AAQ+DADAAKHAF+ TDG F P F LEGRATH DN+YPY+ Sbjct: 257 TTRDEALATTVRFNPTIQAAQADADAAKHAFRVTDGAFVPTFSLEGRATHNDNTYPYLG- 315 Query: 301 PGTPSITHEDYSGKVVMSWDIFRGGQDAWNRSEKAERYTEATMRHARLQRDAYESIDKAW 360 +TH+DYSGKVVMSWD+FRGGQD W RSE +ERY E+T RHARLQRDA ESIDKAW Sbjct: 316 -----VTHDDYSGKVVMSWDVFRGGQDVWRRSEMSERYVESTARHARLQRDAIESIDKAW 370 Query: 361 NARTITATRIGALTRELEAARKTITAYQKEYELGQRSLIDLLNAQNQFFNTSVSLTSARG 420 ART+T TRI ALTR+LEA RKTI A+QKEYELGQRSLIDLLNAQNQ+FN VSLTSARG Sbjct: 371 AARTVTVTRIAALTRQLEADRKTIAAFQKEYELGQRSLIDLLNAQNQYFNALVSLTSARG 430 Query: 421 VVVFADYQLLAAMGTLIEYLKAPPPVDAAPTDMLSIGLPRYSFPTLRVNLPQTGSEPLRV 480 VVVFADYQLLAAMGTL+EYLK+PPPVDAAP D+ G P Y PTLRV LPQTGSEPL V Sbjct: 431 VVVFADYQLLAAMGTLLEYLKSPPPVDAAPVDLGVFGTPDYKAPTLRVKLPQTGSEPLNV 490 Query: 481 AVPAPVVRPAKT-YAAAQTKDVGFADRFTGATTTAAVPGSAEWMQQQKTAADGPNVIYAD 539 VPAP PA+ YA+ + F DR+ + + G++EW+ Q+++ D P ++ Sbjct: 491 PVPAPERVPARLGYASEGPEPDAFKDRWPTRSNLPTMVGASEWITQRRS-TDDPVILNTS 549 Query: 540 PSVTANASSYAST-KPHWLLSAF 561 P A++YA+ KPHWL +AF Sbjct: 550 P-----ATAYAADRKPHWLATAF 567 >ref|ZP_07027015.1| type I secretion outer membrane protein, TolC family [Afipia sp. 1NLS2] gb|EFI51858.1| type I secretion outer membrane protein, TolC family [Afipia sp. 1NLS2] Length = 560 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 335/571 (58%), Positives = 403/571 (70%), Gaps = 45/571 (7%) Query: 8 IACLCLAATPACAEVFSINDALRQAMQTNPGIGEASANRRATESELRQTQSTLLPQVRID 67 + L + AE FSINDAL+QA+QTNPG+GEASANRRATESELRQTQ TLLPQVR++ Sbjct: 9 LLALSFGVSSVQAEPFSINDALKQAIQTNPGVGEASANRRATESELRQTQGTLLPQVRLE 68 Query: 68 ASYGPEKFDQSPGFITPNIQAAPTVGSGPWRNGSQESVVVRQLLWDGFSSIYDVWRQTAR 127 A+ GPE+F Q NI A P GSG +G SVVVRQLL+DGF+SI +VWRQTAR Sbjct: 69 ANAGPERFTQ-------NI-ATPPAGSGMTMHGRYASVVVRQLLFDGFTSINEVWRQTAR 120 Query: 128 VNAAASRVKERTELLALDAAEGYIDVTRYMRLVSLAQQNVANHEKIFSNVNSRFSGGRAG 187 VNA+A RV+ERTEL+ALDAAE YIDV RY RLV LA+QNVANHE IF+NV SR+ GGR+G Sbjct: 121 VNASAFRVRERTELIALDAAEAYIDVVRYTRLVDLARQNVANHEAIFNNVESRYKGGRSG 180 Query: 188 EGDLEQARERVEAARAALAEFQRSLDDARAKYRKTVGLEPINVRFPAPLAGLPHSRDEAL 247 EGDL+QA ERVEAA+AAL+EF+RSL+DARAKYRK VG+EP N+RFP+ L G+P S+D +L Sbjct: 181 EGDLQQALERVEAAKAALSEFERSLEDARAKYRKVVGVEPYNLRFPSTLRGMPTSKDASL 240 Query: 248 ATTLRFNSTIAAAQSDADAAKHAFKATDGTFGPKFYLEGRATHYDNSYPYVAAPGTPSIT 307 A + N+T+ A+Q+D DAA+HAF AT G+F P LEGRA+ +S Y+ Sbjct: 241 AVAIHHNATLQASQADTDAARHAFHATAGSFVPTVSLEGRASRGIDSDTYIG-------R 293 Query: 308 HEDYSGKVVMSWDIFRGGQDAWNRSEKAERYTEATMRHARLQRDAYESIDKAWNARTITA 367 +D SGKVVMSWDIFRGGQD W R+E AERY + M HARLQRDA ESIDKAW+ARTIT Sbjct: 294 RDDVSGKVVMSWDIFRGGQDTWRRTEMAERYNQQNMAHARLQRDALESIDKAWSARTITV 353 Query: 368 TRIGALTRELEAARKTITAYQKEYELGQRSLIDLLNAQNQFFNTSVSLTSARGVVVFADY 427 +RIGALTR+L A RK I AY+KEYELGQRSLIDLLNA+NQ+FN +VSLTSARGV+VFADY Sbjct: 354 SRIGALTRQLAADRKAIDAYRKEYELGQRSLIDLLNAENQYFNAAVSLTSARGVIVFADY 413 Query: 428 QLLAAMGTLIEYLKAPPPVDAAPTDMLSIGLPRYSFPT----LRVNLPQTGSEPLRVAVP 483 QLLAAMGTL++YLKAPPPV+AAP D ++ G FPT NLP TGS PL V Sbjct: 414 QLLAAMGTLLDYLKAPPPVEAAPLDQVAFG----PFPTKIAPFIWNLPSTGSNPLNV-TG 468 Query: 484 APVVRPAKTYAAAQTKDVGFADRFTGATTTAAVPGSAE--WMQQQK------------TA 529 P P Y A V DR+ + T + S W++Q + TA Sbjct: 469 TPSAIP---YTPAAGAIVNSGDRWQVWSPTPTIQNSHNPAWLEQSRSPKPVDLRSSNQTA 525 Query: 530 ADGPNVIYADPSVTANASSYASTKPHWLLSA 560 +G + +A T +SS P W +A Sbjct: 526 GNGSALSFAAAEFTETSSSV----PAWFNAA 552 >ref|YP_002289025.1| type I secretion outer membrane protein, TolC [Oligotropha carboxidovorans OM5] ref|YP_004632935.1| secretion outer membrane protein, TolC family [Oligotropha carboxidovorans OM5] gb|ACI93160.1| type I secretion outer membrane protein, TolC [Oligotropha carboxidovorans OM5] gb|AEI03117.1| secretion outer membrane protein, TolC family [Oligotropha carboxidovorans OM4] gb|AEI06694.1| secretion outer membrane protein, TolC family [Oligotropha carboxidovorans OM5] Length = 555 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 326/509 (64%), Positives = 384/509 (75%), Gaps = 19/509 (3%) Query: 21 EVFSINDALRQAMQTNPGIGEASANRRATESELRQTQSTLLPQVRIDASYGPEKFDQSPG 80 E FSINDALRQA+QTNPG+GEASANRRATESELRQTQ TLLPQ+R++A+ GPE+F Q Sbjct: 22 EPFSINDALRQAIQTNPGVGEASANRRATESELRQTQGTLLPQIRLEANAGPERFTQ--- 78 Query: 81 FITPNIQAAPTVGSGPWRNGSQESVVVRQLLWDGFSSIYDVWRQTARVNAAASRVKERTE 140 N+ APT GSG W +G + SVV+RQLL+DGF+SI DVWRQTARVNA+A RV+ERTE Sbjct: 79 ----NVVPAPT-GSGTWMHGREGSVVIRQLLFDGFASINDVWRQTARVNASAYRVRERTE 133 Query: 141 LLALDAAEGYIDVTRYMRLVSLAQQNVANHEKIFSNVNSRFSGGRAGEGDLEQARERVEA 200 L+ALDAAE YIDV RY RLV LA+QNVANH+ IFSNV SR+ GGR+GEGDL+QA ERVE+ Sbjct: 134 LIALDAAEAYIDVVRYARLVELARQNVANHQSIFSNVRSRYEGGRSGEGDLQQALERVES 193 Query: 201 ARAALAEFQRSLDDARAKYRKTVGLEPINVRFPAPLAGLPHSRDEALATTLRFNSTIAAA 260 A+AALAEF+RS +DARAKYRK VGLE N+RFP PL G+P S+D +LA +R N+T+ AA Sbjct: 194 AKAALAEFERSQEDARAKYRKVVGLEAFNLRFPGPLRGMPPSKDASLAVAVRHNATLQAA 253 Query: 261 QSDADAAKHAFKATDGTFGPKFYLEGRATHYDNSYPYVAAPGTPSITHEDYSGKVVMSWD 320 Q+D DAA+HAF +T G F P LEGRA+ NS YV +D SGKVVMSWD Sbjct: 254 QADTDAARHAFHSTAGAFVPTVSLEGRASRGINSNTYVG-------RRDDVSGKVVMSWD 306 Query: 321 IFRGGQDAWNRSEKAERYTEATMRHARLQRDAYESIDKAWNARTITATRIGALTRELEAA 380 IFRGGQD W R+E AERY E TMRHARLQRDA ESIDKAW+ARTIT +R ALTR+L A Sbjct: 307 IFRGGQDTWRRTEMAERYNEQTMRHARLQRDALESIDKAWSARTITVSRAAALTRQLAAD 366 Query: 381 RKTITAYQKEYELGQRSLIDLLNAQNQFFNTSVSLTSARGVVVFADYQLLAAMGTLIEYL 440 RK I AY+KEYELGQRSLIDLLNA+NQ+FN +VSLTSARGV+VFADYQLLAAMGTL++YL Sbjct: 367 RKAIDAYRKEYELGQRSLIDLLNAENQYFNAAVSLTSARGVIVFADYQLLAAMGTLLDYL 426 Query: 441 KAPPPVDAAPTDMLSIGLPRYSFPTLRVNLPQTGSEPLRVAVPAPVVRPAKTYAAAQTKD 500 KAPPPV+AAP D L+ G LP TGS P+ A AP P A A Sbjct: 427 KAPPPVEAAPLDHLAFGPFPIKLTPFVFKLPPTGSNPIN-AAGAPTAVPYTPEAGAI--- 482 Query: 501 VGFADRFTGATTTAAVPGSAEWMQQQKTA 529 V +R+ +TT + G+ W+Q + A Sbjct: 483 VNSGERWQTWSTTPTIQGNPTWLQPNRQA 511 >ref|ZP_08629861.1| agglutination protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07504.1| agglutination protein [Bradyrhizobiaceae bacterium SG-6C] Length = 491 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 302/492 (61%), Positives = 364/492 (73%), Gaps = 22/492 (4%) Query: 25 INDALRQAMQTNPGIGEASANRRATESELRQTQSTLLPQVRIDASYGPEKFDQSPGFITP 84 INDAL+QAM TNPG+GEA+ANRRATESELRQ QSTLLPQVR++A GPEKF+Q I P Sbjct: 2 INDALKQAMTTNPGVGEAAANRRATESELRQQQSTLLPQVRVEARVGPEKFNQQ---IIP 58 Query: 85 NIQAAPTVGSGPWRNGSQESVVVRQLLWDGFSSIYDVWRQTARVNAAASRVKERTELLAL 144 AP +G+ WRNG SVV RQL++DG +S+ ++WRQ+ARV+AAA+RV ERTELLAL Sbjct: 59 ----AP-LGNDTWRNGRDVSVVGRQLVFDGLTSLNEIWRQSARVSAAAARVHERTELLAL 113 Query: 145 DAAEGYIDVTRYMRLVSLAQQNVANHEKIFSNVNSRFSGGRAGEGDLEQARERVEAARAA 204 DAAE YIDV RY RL+S+A+ NV H +FSNV +RF GGRAGEGDLEQ RERVE A AA Sbjct: 114 DAAEAYIDVIRYQRLISIAEDNVRVHRSLFSNVQARFKGGRAGEGDLEQTRERVENAVAA 173 Query: 205 LAEFQRSLDDARAKYRKTVGLEPINVRFPAPLAGLPHSRDEALATTLRFNSTIAAAQSDA 264 LA F+++LD+ARAKYRKTVGLEP N+R P L GLP ++DE+LA ++FN TI AA++DA Sbjct: 174 LAGFRQNLDEARAKYRKTVGLEPYNLRNPHRLGGLPSTKDESLAVAIKFNPTIKAAEADA 233 Query: 265 DAAKHAFKATDGTFGPKFYLEGRATHYDNSYPYVAAPGTPSITHEDYSGKVVMSWDIFRG 324 AAK+AF++T G F P YLEGRA+ ++ YV +D SGKVV+SWD+FRG Sbjct: 234 RAAKYAFRSTSGAFVPNVYLEGRASTGTDANGYVG-------KRDDISGKVVVSWDVFRG 286 Query: 325 GQDAWNRSEKAERYTEATMRHARLQRDAYESIDKAWNARTITATRIGALTRELEAARKTI 384 GQD W R+E AERY E TMRHARLQRDA ESIDKAW ART+TA RI AL R++ + RK I Sbjct: 287 GQDTWRRNEMAERYVEGTMRHARLQRDAVESIDKAWAARTLTADRIAALNRQIASDRKVI 346 Query: 385 TAYQKEYELGQRSLIDLLNAQNQFFNTSVSLTSARGVVVFADYQLLAAMGTLIEYLKAPP 444 T+YQKEYELGQRSL+DLLN QNQ FN +SL SA+ V +FADYQLLAAMG LIEY+K PP Sbjct: 347 TSYQKEYELGQRSLVDLLNGQNQLFNGFISLISAQSVAIFADYQLLAAMGNLIEYVKQPP 406 Query: 445 PVDAAPTDMLSIGLPRYSFPTLRVNLPQTGSEPLRVAVPAPVVRPAKTYAAAQ-----TK 499 P DA P ++ GL P + ++ P TG EPL V PV PA YAAA T+ Sbjct: 407 PADAIPLEVEPFGLFPTKLPPIILHDPMTGPEPLPVKRVEPV--PALNYAAASGAGFTTR 464 Query: 500 DVGFADRFTGAT 511 FA R+ G+ Sbjct: 465 GDTFATRWQGSN 476 >ref|YP_485252.1| Type I secretion outer membrane protein, TolC [Rhodopseudomonas palustris HaA2] gb|ABD06341.1| Type I secretion outer membrane protein, TolC [Rhodopseudomonas palustris HaA2] Length = 519 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/521 (54%), Positives = 348/521 (66%), Gaps = 25/521 (4%) Query: 5 YTVIACLCLAATPA-CAEVFSINDALRQAMQTNPGIGEASANRRATESELRQTQSTLLPQ 63 + +A + L A PA AE F+I DA+ QA++TNPG+GEA+ANRRATE+ELRQTQ TLLPQ Sbjct: 8 FAAVALIALGADPAGAAEPFTILDAINQAVKTNPGVGEAAANRRATEAELRQTQGTLLPQ 67 Query: 64 VRIDASYGPEKFDQSPGFITPNIQAAPTVGSGPWRNGSQESVVVRQLLWDGFSSIYDVWR 123 VR+ AS GPEK Q TPN + + G Q SVVVRQLL+DGF+SI +VWR Sbjct: 68 VRLQASAGPEKLRQY-DVATPN--------NDEYLRGRQGSVVVRQLLFDGFASINEVWR 118 Query: 124 QTARVNAAASRVKERTELLALDAAEGYIDVTRYMRLVSLAQQNVANHEKIFSNVNSRFSG 183 Q ARV+AAA RV ERTEL+ LDAAE YID+ RY +LV+LAQQN+ H ++ NV +RF G Sbjct: 119 QAARVDAAAFRVLERTELIGLDAAEAYIDMVRYTKLVALAQQNLKVHLELRKNVLARFQG 178 Query: 184 GRAGEGDLEQARERVEAARAALAEFQRSLDDARAKYRKTVGLEPINVRFPAPLAGLPHSR 243 GRAGEGD +QA ERV AA A AEF+ SLD ARAKYRK VGLEP N+RFP L+ LP ++ Sbjct: 179 GRAGEGDTQQAEERVAAAEAVAAEFRLSLDSARAKYRKVVGLEPYNLRFPGRLSDLPQTK 238 Query: 244 DEALATTLRFNSTIAAAQSDADAAKHAFKATDGTFGPKFYLEGRATHYDNSYPYVAAPGT 303 +E+L +FN TI AA +D AA AF AT G F P LEGRAT + Y Sbjct: 239 EESLEVAYKFNPTIRAAGADVVAANRAFDATTGAFLPTLALEGRATRGKETILY------ 292 Query: 304 PSITHEDYSGKVVMSWDIFRGGQDAWNRSEKAERYTEATMRHARLQRDAYESIDKAWNAR 363 + +++ SGK+VMSWDIF GGQ +W R+E AER + + ARLQRDA ES+DKAW AR Sbjct: 293 -NNQYDEVSGKLVMSWDIFNGGQSSWRRNEAAERMIQEQQKLARLQRDALESLDKAWAAR 351 Query: 364 TITATRIGALTRELEAARKTITAYQKEYELGQRSLIDLLNAQNQFFNTSVSLTSARGVVV 423 TIT R AL R++EAAR+T AY KEYELGQR+L+DLLN+QNQ+FN SVSL SARGV V Sbjct: 352 TITNDRAAALVRDVEAARRTFAAYTKEYELGQRTLVDLLNSQNQYFNASVSLVSARGVAV 411 Query: 424 FADYQLLAAMGTLIEYLKAPPPVDAAPTDMLSIGLPRYSFPTLRVNLPQTGSEPLRVAVP 483 FADYQLLA MG L+EYLK P + D+ G ++ +R+ P G EP+ A P Sbjct: 412 FADYQLLATMGQLLEYLKTGHPPEIQLVDVHPSGFIGFALAPVRLRPPGPGPEPVNAAGP 471 Query: 484 APVVR-PAKTYAAAQTKDVGFADRF-----TGATTTAAVPG 518 P +T A + + F DR+ T A +A PG Sbjct: 472 VRYFESPFET--AKLPRVISFDDRWASGHATNANASAIFPG 510