BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0089.0003.p (416 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772109.1| HlyD family secretion protein [Bradyrhizobium j... 676 0.0 ref|ZP_07027013.1| type I secretion membrane fusion protein, Hly... 629 e-178 ref|YP_002289023.1| type I secretion membrane fusion protein, Hl... 626 e-177 ref|YP_485859.1| Type I secretion membrane fusion protein, HlyD ... 599 e-169 ref|ZP_08629863.1| HlyD family secretion protein [Bradyrhizobiac... 593 e-167 >ref|NP_772109.1| HlyD family secretion protein [Bradyrhizobium japonicum USDA 110] dbj|BAC50734.1| blr5469 [Bradyrhizobium japonicum USDA 110] Length = 416 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/415 (86%), Positives = 390/415 (93%), Gaps = 1/415 (0%) Query: 3 SSDFTFANDIRSAALLRTPRTSRMLLWTSCALLATFLIWAHFAVLDEVKRGSGRVVPSRQ 62 SSDF FAND+R+AA LR PRTSRMLL S ALLATFL WAHFAVLDEVKRG+GRVVP+RQ Sbjct: 2 SSDFAFANDVRAAAALRAPRTSRMLLVASLALLATFLTWAHFAVLDEVKRGNGRVVPARQ 61 Query: 63 MQVVQSLEGGIVGDILIREGDIVQQGQSLMRIDDTKFASEFGEIRERRAAMAARVARLDA 122 MQVVQSLEGGIVGDIL++EG IVQQGQSLMRIDDTKFASEFGEIRERRAAMAARV RL+A Sbjct: 62 MQVVQSLEGGIVGDILVQEGSIVQQGQSLMRIDDTKFASEFGEIRERRAAMAARVTRLEA 121 Query: 123 EARGRTEITFPDDLDKMVPAAVATETSVFKMRGQKVAQDIDVLNQQVTRLTGSLKLLERE 182 EARG+ E+ FPD LD++VP+AVATE+SVFKMR QK+AQD+DVLNQQV RL G+LKLL+RE Sbjct: 122 EARGKGELIFPDQLDQVVPSAVATESSVFKMRAQKLAQDVDVLNQQVARLGGTLKLLDRE 181 Query: 183 QTLTRRLYEQKVVPEIEMLRLDRQATEMKGQLAEAQSKIANITASFRSQADEDLAKSRAD 242 LTR+LYEQKVVPEIEMLRLDRQATEM+GQLAEAQSKIA+ +SFRSQADEDLAKS+ D Sbjct: 182 LALTRKLYEQKVVPEIEMLRLDRQATEMRGQLAEAQSKIASTVSSFRSQADEDLAKSKGD 241 Query: 243 LAVLDENIKSAQDRVRRTDLKAPVHGIVNKLNISTIGAVVQPGANLMDIVPLDDTLLVEG 302 LAVLDENIKSAQDRVRRTDLKAPVHGIVNKLN++T+GAVVQPGAN+MDIVPLDDTLLVEG Sbjct: 242 LAVLDENIKSAQDRVRRTDLKAPVHGIVNKLNVTTVGAVVQPGANVMDIVPLDDTLLVEG 301 Query: 303 RIRPQDIAFIRPDQDAVVKISAYDSSVYGSLKGKVERISADTIVDDKAEKT-ERQETFYR 361 RI+PQDIAFIRP QDAVVKISAYDSSVYGSLKGKVERISADTIVDDKAEKT +RQE+FYR Sbjct: 302 RIKPQDIAFIRPGQDAVVKISAYDSSVYGSLKGKVERISADTIVDDKAEKTPDRQESFYR 361 Query: 362 VMVRTDKNHLGTEQHPLPIIPGMVTTVEVLTGEKSVLDYIVKPARLLRDEALRER 416 VMVRT+KNHLGTEQ PLPIIPGM+ TVEVLTGEKSVLDY+V+PAR LRDEALRER Sbjct: 362 VMVRTEKNHLGTEQKPLPIIPGMIATVEVLTGEKSVLDYLVRPARTLRDEALRER 416 >ref|ZP_07027013.1| type I secretion membrane fusion protein, HlyD family [Afipia sp. 1NLS2] gb|EFI51856.1| type I secretion membrane fusion protein, HlyD family [Afipia sp. 1NLS2] Length = 417 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 307/416 (73%), Positives = 362/416 (87%), Gaps = 1/416 (0%) Query: 1 MASSDFTFANDIRSAALLRTPRTSRMLLWTSCALLATFLIWAHFAVLDEVKRGSGRVVPS 60 M SSDF+FAND+R+AA L+TPR S +LL T+ AL+ +IWAHFAVLDEVKRG+ RV+PS Sbjct: 1 MRSSDFSFANDVRAAAELKTPRASLILLGTTVALMVVGIIWAHFAVLDEVKRGNARVIPS 60 Query: 61 RQMQVVQSLEGGIVGDILIREGDIVQQGQSLMRIDDTKFASEFGEIRERRAAMAARVARL 120 RQ+QVVQSLEGGIV DIL++EGDIV+QGQ LMRIDDTKF ++ GE+RERR A AARVARL Sbjct: 61 RQLQVVQSLEGGIVQDILVQEGDIVKQGQVLMRIDDTKFLADLGEVRERRFANAARVARL 120 Query: 121 DAEARGRTEITFPDDLDKMVPAAVATETSVFKMRGQKVAQDIDVLNQQVTRLTGSLKLLE 180 +AE +G + TFPD L + P AV TE +VF R +K+AQD+DVL QQ TRL+ SLKLL Sbjct: 121 EAEVKGLPKPTFPDKLAERAPQAVQTEQNVFDARAKKLAQDVDVLTQQATRLSDSLKLLS 180 Query: 181 REQTLTRRLYEQKVVPEIEMLRLDRQATEMKGQLAEAQSKIANITASFRSQADEDLAKSR 240 RE LT+ LY QKVVPEIEMLRL RQ ++M+GQLAE Q++I+ A+FRSQA+EDLAKSR Sbjct: 181 REVQLTQNLYTQKVVPEIEMLRLQRQESDMRGQLAETQARISTAKATFRSQAEEDLAKSR 240 Query: 241 ADLAVLDENIKSAQDRVRRTDLKAPVHGIVNKLNISTIGAVVQPGANLMDIVPLDDTLLV 300 ADLAVL+E KSAQDRVRR DLK+PV+GI+NKLN++T+GAVVQPGANLMDIVPLDD+LLV Sbjct: 241 ADLAVLEETTKSAQDRVRRADLKSPVNGIINKLNVTTVGAVVQPGANLMDIVPLDDSLLV 300 Query: 301 EGRIRPQDIAFIRPDQDAVVKISAYDSSVYGSLKGKVERISADTIVDDKAE-KTERQETF 359 EGRIRPQDIAFIRP Q+AVVKI+AYDSSVYGSLKGKVERISAD+IVDDK+E + E+ E+F Sbjct: 301 EGRIRPQDIAFIRPQQNAVVKITAYDSSVYGSLKGKVERISADSIVDDKSEQRGEKGESF 360 Query: 360 YRVMVRTDKNHLGTEQHPLPIIPGMVTTVEVLTGEKSVLDYIVKPARLLRDEALRE 415 YRV+VRTDKNHLGT +HPLPIIPGMV TVEV TGEKSVLDY++KPAR+LRDEALRE Sbjct: 361 YRVIVRTDKNHLGTAEHPLPIIPGMVATVEVQTGEKSVLDYMMKPARMLRDEALRE 416 >ref|YP_002289023.1| type I secretion membrane fusion protein, HlyD [Oligotropha carboxidovorans OM5] ref|YP_004632937.1| secretion protein HlyD [Oligotropha carboxidovorans OM5] gb|ACI93158.1| type I secretion membrane fusion protein, HlyD [Oligotropha carboxidovorans OM5] gb|AEI03119.1| secretion protein HlyD [Oligotropha carboxidovorans OM4] gb|AEI06696.1| secretion protein HlyD [Oligotropha carboxidovorans OM5] Length = 417 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 308/416 (74%), Positives = 363/416 (87%), Gaps = 1/416 (0%) Query: 1 MASSDFTFANDIRSAALLRTPRTSRMLLWTSCALLATFLIWAHFAVLDEVKRGSGRVVPS 60 M SSDF+FAND+R+AA L+TPR S +LL TS ALL +IWAHFAVLDEVKRG+ RV+PS Sbjct: 1 MQSSDFSFANDVRAAAELKTPRASLILLATSIALLVVGVIWAHFAVLDEVKRGNARVIPS 60 Query: 61 RQMQVVQSLEGGIVGDILIREGDIVQQGQSLMRIDDTKFASEFGEIRERRAAMAARVARL 120 RQ+QVVQSLEGGIV +IL++EGDIV+QGQ LMRIDDTKF ++ GE+RERR A AARVARL Sbjct: 61 RQLQVVQSLEGGIVQEILVQEGDIVKQGQVLMRIDDTKFLADLGEVRERRLANAARVARL 120 Query: 121 DAEARGRTEITFPDDLDKMVPAAVATETSVFKMRGQKVAQDIDVLNQQVTRLTGSLKLLE 180 +AE +G + +FP+ L + P V TE +VF R QK+AQDIDVL QQ TRLT SLKLL Sbjct: 121 EAEVQGLPKPSFPEALAERAPQIVQTEQNVFDARAQKLAQDIDVLAQQETRLTESLKLLS 180 Query: 181 REQTLTRRLYEQKVVPEIEMLRLDRQATEMKGQLAEAQSKIANITASFRSQADEDLAKSR 240 RE LTR LY QKVVPEIEMLRL RQA++M+GQLAE QS+IAN A+FRSQA+EDLAKSR Sbjct: 181 REVELTRHLYTQKVVPEIEMLRLQRQASDMRGQLAETQSRIANARAAFRSQAEEDLAKSR 240 Query: 241 ADLAVLDENIKSAQDRVRRTDLKAPVHGIVNKLNISTIGAVVQPGANLMDIVPLDDTLLV 300 ADLAVL+E KSAQDRVRR DLK+PV+GI+NKLN++T+GAVVQPGANLMDIVPLDDTLLV Sbjct: 241 ADLAVLEETTKSAQDRVRRADLKSPVNGIINKLNVTTVGAVVQPGANLMDIVPLDDTLLV 300 Query: 301 EGRIRPQDIAFIRPDQDAVVKISAYDSSVYGSLKGKVERISADTIVDDKA-EKTERQETF 359 EGRIRPQDIAFIRP Q+AVVKI+AYDSSVYGSLKGKVERISAD+IVD+K+ ++ E+ E+F Sbjct: 301 EGRIRPQDIAFIRPQQNAVVKITAYDSSVYGSLKGKVERISADSIVDEKSDQRGEKGESF 360 Query: 360 YRVMVRTDKNHLGTEQHPLPIIPGMVTTVEVLTGEKSVLDYIVKPARLLRDEALRE 415 YRV++RT+KNHLG+ ++PLPIIPGMV TVEV TGEKSVLDY++KPAR+LRDEALRE Sbjct: 361 YRVIIRTEKNHLGSTENPLPIIPGMVATVEVQTGEKSVLDYMLKPARMLRDEALRE 416 >ref|YP_485859.1| Type I secretion membrane fusion protein, HlyD [Rhodopseudomonas palustris HaA2] gb|ABD06948.1| Type I secretion membrane fusion protein, HlyD [Rhodopseudomonas palustris HaA2] Length = 444 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 297/444 (66%), Positives = 354/444 (79%), Gaps = 28/444 (6%) Query: 1 MASSDFTFANDIRSAALLRTPRTSRMLLWTSCALLATFLIWAHFAVLDEVKRGSGRVVPS 60 MA +DF F+ND+R+A LRTP+T+RMLL S AL TFL WAHFAVLDEVKRG+G+VVPS Sbjct: 1 MAQTDFAFSNDVRAAVELRTPKTARMLLSASLALFFTFLAWAHFAVLDEVKRGNGKVVPS 60 Query: 61 RQMQVVQSLEGGIVGDILIREGDIVQQGQSLMRIDDTKFASEFGEIRERRAAMAARVARL 120 RQ QVVQSLEGGI+ ++L++EG IV + Q L RI+DT FA++FGEIRERR AM ARV RL Sbjct: 61 RQTQVVQSLEGGIIAELLVQEGAIVDKDQPLARIEDTNFAAQFGEIRERRGAMGARVLRL 120 Query: 121 DAEARGRTEITFPDDLDKMVPAAVATETSVFKMRGQKVAQDIDVLNQQV----------- 169 +AE GR + FP +L ++ P AV E VF+ +K+AQDIDV+ QQ Sbjct: 121 EAETEGRASVVFPAELMQVAPRAVEAERLVFEAHNRKLAQDIDVVQQQEIQKTKEIDELR 180 Query: 170 ---TRLTGSLKLLEREQTLTRRLYEQKVVPEIEMLRLDRQATEMKGQLA----------- 215 R + +L LL RE LTR+LY+QKVVPEIEMLR DRQAT+M+GQLA Sbjct: 181 ASEKRFSETLTLLNREIALTRKLYDQKVVPEIEMLRADRQATDMRGQLAVVQATIIKTQA 240 Query: 216 ---EAQSKIANITASFRSQADEDLAKSRADLAVLDENIKSAQDRVRRTDLKAPVHGIVNK 272 EA+S+ NIT +FR+QA++DLAKSR DLAVLDENIKSA+DRVRRT+L++PVHG+VNK Sbjct: 241 AVQEARSRRLNITTAFRAQAEDDLAKSRGDLAVLDENIKSAKDRVRRTELRSPVHGVVNK 300 Query: 273 LNISTIGAVVQPGANLMDIVPLDDTLLVEGRIRPQDIAFIRPDQDAVVKISAYDSSVYGS 332 LNI+TIGAVV PGA+LM+IVPLDDTLLVEGRIRPQDIAFIRPD +AVVK+SAYDSSVYGS Sbjct: 301 LNITTIGAVVAPGASLMEIVPLDDTLLVEGRIRPQDIAFIRPDHEAVVKLSAYDSSVYGS 360 Query: 333 LKGKVERISADTIVDDKAEKTERQETFYRVMVRTDKNHLGTEQHPLPIIPGMVTTVEVLT 392 L G+VERISADTI D+K +K ER ETFYRVMVRT+KNHLGT + PLPIIPGMV TVE+LT Sbjct: 361 LHGRVERISADTITDEKGDKNERGETFYRVMVRTEKNHLGTNEQPLPIIPGMVATVEILT 420 Query: 393 GEKSVLDYIVKPARLLRDEALRER 416 G+KSVLDY++KPAR LRDEALRER Sbjct: 421 GKKSVLDYLIKPARTLRDEALRER 444 >ref|ZP_08629863.1| HlyD family secretion protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07506.1| HlyD family secretion protein [Bradyrhizobiaceae bacterium SG-6C] Length = 381 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 287/378 (75%), Positives = 335/378 (88%) Query: 39 LIWAHFAVLDEVKRGSGRVVPSRQMQVVQSLEGGIVGDILIREGDIVQQGQSLMRIDDTK 98 ++WAHFAVLDEVKRG+G+V+ SRQ QV+QSLEGG+V DIL+REGDIV+QGQ LMRIDDTK Sbjct: 4 IVWAHFAVLDEVKRGNGKVISSRQTQVLQSLEGGLVLDILVREGDIVKQGQILMRIDDTK 63 Query: 99 FASEFGEIRERRAAMAARVARLDAEARGRTEITFPDDLDKMVPAAVATETSVFKMRGQKV 158 F+++ GE+RERRA+ AARVARL+AE G FPD+L K P V TE ++F R +K+ Sbjct: 64 FSADLGEVRERRASNAARVARLEAEVTGAGSPKFPDELIKNAPQVVETERNLFLARVKKL 123 Query: 159 AQDIDVLNQQVTRLTGSLKLLEREQTLTRRLYEQKVVPEIEMLRLDRQATEMKGQLAEAQ 218 +QD+DVL QQ TRL+GSLKLL RE +TR LY QKVVPEIEMLRL+RQA+E++GQLAE Q Sbjct: 124 SQDVDVLAQQETRLSGSLKLLSREVEITRNLYAQKVVPEIEMLRLERQASEIRGQLAETQ 183 Query: 219 SKIANITASFRSQADEDLAKSRADLAVLDENIKSAQDRVRRTDLKAPVHGIVNKLNISTI 278 S+IANI +F+SQA+EDLAKSR DLAVL+ENIKSAQDRVRR DLK+PV+GIVNKLN++T+ Sbjct: 184 SRIANIKTAFKSQAEEDLAKSRGDLAVLEENIKSAQDRVRRADLKSPVNGIVNKLNVTTV 243 Query: 279 GAVVQPGANLMDIVPLDDTLLVEGRIRPQDIAFIRPDQDAVVKISAYDSSVYGSLKGKVE 338 GAVVQPGANLMDIVPLDDTLLVEGRIRPQDIAFIRP Q+AVVKI+AYDSSVYGSLKG+VE Sbjct: 244 GAVVQPGANLMDIVPLDDTLLVEGRIRPQDIAFIRPHQEAVVKITAYDSSVYGSLKGRVE 303 Query: 339 RISADTIVDDKAEKTERQETFYRVMVRTDKNHLGTEQHPLPIIPGMVTTVEVLTGEKSVL 398 RISADTI DDK E+ E+ ETFYRVMVRTDKNHLGT + PLPIIPGMVTTVE+LTG KSVL Sbjct: 304 RISADTIADDKPERGEKGETFYRVMVRTDKNHLGTAERPLPIIPGMVTTVEILTGAKSVL 363 Query: 399 DYIVKPARLLRDEALRER 416 DY++KPAR+LRDEALRER Sbjct: 364 DYLIKPARMLRDEALRER 381