BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0089.0002.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772110.1| hypothetical protein blr5470 [Bradyrhizobium ja... 372 e-101 ref|ZP_07027012.1| transglutaminase family protein cysteine pept... 324 1e-86 ref|YP_002289022.1| hypothetical protein OCAR_6039 [Oligotropha ... 293 4e-77 ref|ZP_08629864.1| hypothetical protein CSIRO_2961 [Bradyrhizobi... 238 1e-60 ref|YP_485860.1| hypothetical protein RPB_2244 [Rhodopseudomonas... 237 3e-60 >ref|NP_772110.1| hypothetical protein blr5470 [Bradyrhizobium japonicum USDA 110] dbj|BAC50735.1| blr5470 [Bradyrhizobium japonicum USDA 110] Length = 341 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/296 (66%), Positives = 222/296 (75%), Gaps = 4/296 (1%) Query: 42 LARAVDAASNRPPATFFTIADVLAKLDRQRGRGPNAIRTASLTPPNTATDAVPAAKPLPP 101 LA +DAA+ R PATFF I DVLAKLD RGRGPNA+R A+LTP N ATDA P P+P Sbjct: 50 LAPGIDAAT-RAPATFFRITDVLAKLDAMRGRGPNAVRLAALTPSNIATDAAPEPGPVPA 108 Query: 102 VGAEPFGLFTFRAPENGLWRKWRGLESDLAKEQSVLEQCRESATGCPPQAAQFLRLIGAV 161 G EPFGLF FRAPE LW+KWRGLE+ LA + L +C+ A CP AAQFLRLIGAV Sbjct: 109 KGDEPFGLFIFRAPEGLLWQKWRGLETRLASDAETLSRCQTDAGNCPSNAAQFLRLIGAV 168 Query: 162 KSRSGRDRLDEANRAVNQAIRYVSDFAQHGEADRWTAPLATFATGKGDCEDYAIAKYTAL 221 KS+SGR RLDEANRAVN A+RYVSDFAQHGEADRW++PL TFAT KGDCEDYAIAKY AL Sbjct: 169 KSKSGRARLDEANRAVNTAVRYVSDFAQHGEADRWSSPLETFATAKGDCEDYAIAKYVAL 228 Query: 222 SEAGFPREDLRLVLGRDRTIRQDHAVLAARLDGHWLILDSRRSELIDDGELGNFTPMFAI 281 EAGFPREDLRLVL RDR +RQDHAVLAARLDG WL+LD+RRSELI+D N P+FAI Sbjct: 229 REAGFPREDLRLVLVRDRAVRQDHAVLAARLDGQWLVLDNRRSELIEDSGATNLAPLFAI 288 Query: 282 NDRGVQLFAAPYAKRLPLGDELDAAPAAANAVETEWTGAEALDAASPLLGFLPVLM 337 + GV LFAAPYA+R A AA+ T+W A+ + A S G LP+LM Sbjct: 289 DHAGVHLFAAPYAQRQLA--GPAEAAPAASDEATQWGNAD-IAAGSAWPGALPLLM 341 >ref|ZP_07027012.1| transglutaminase family protein cysteine peptidase BTLCP [Afipia sp. 1NLS2] gb|EFI51855.1| transglutaminase family protein cysteine peptidase BTLCP [Afipia sp. 1NLS2] Length = 343 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 171/297 (57%), Positives = 209/297 (70%), Gaps = 9/297 (3%) Query: 47 DAASNRPPATFFTIADVLAKLD-RQRGRGP--NAIRTASLTPPNTATDAVPAAKPLPPVG 103 DA P A FFTI VLAKLD +RG N + ASLTP TD P+ + P G Sbjct: 50 DAPVAPPQAKFFTINGVLAKLDATKRGTAAPGNDVELASLTPTGIVTD-TPSVQIAPVNG 108 Query: 104 AEPFGLFTFRAPENGLWRKWRGLESDLAKEQSVLEQCRESATGCPPQAAQFLRLIGAVKS 163 EPFGLF FRAPE LWRKWRGLE+D+AK+ L +C+ A+ C P AAQF R + + K+ Sbjct: 109 PEPFGLFAFRAPEGALWRKWRGLEADMAKDTESLHRCQNDASSCSPAAAQFARFVASAKA 168 Query: 164 RSGRDRLDEANRAVNQAIRYVSDFAQHGEADRWTAPLATFATGKGDCEDYAIAKYTALSE 223 +SGR +L++ N+ VN AIRYVSD Q+G ADRW++ L++FATG+GDCEDYAIAKY ALSE Sbjct: 169 KSGRAQLEDINQNVNLAIRYVSDSMQYGVADRWSSALSSFATGQGDCEDYAIAKYAALSE 228 Query: 224 AGFPREDLRLVLGRDRTIRQDHAVLAARLDGHWLILDSRRSELIDDGELGNFTPMFAIND 283 AGF EDLRLVL RDR +R+DHAVLA +G WLI+D+R + L +D ++ +FTP+FAIN Sbjct: 229 AGFAAEDLRLVLVRDRAVREDHAVLAVHHEGKWLIMDNRSALLREDSQISSFTPLFAINY 288 Query: 284 RGVQLFAAPYAKRLPLGDELDAAPAAANAVETEWTGAEALDAASP---LLGFLPVLM 337 RGVQLFA PYAKR PL E DA PAA EWTGAEA +ASP +G LP+LM Sbjct: 289 RGVQLFATPYAKRDPLDGETDALPAADAVGAAEWTGAEA--SASPAGGAIGELPLLM 343 >ref|YP_002289022.1| hypothetical protein OCAR_6039 [Oligotropha carboxidovorans OM5] ref|YP_004632938.1| hypothetical protein OCA5_c19880 [Oligotropha carboxidovorans OM5] gb|ACI93157.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] gb|AEI03120.1| hypothetical protein OCA4_c19870 [Oligotropha carboxidovorans OM4] gb|AEI06697.1| hypothetical protein OCA5_c19880 [Oligotropha carboxidovorans OM5] Length = 347 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 156/297 (52%), Positives = 195/297 (65%), Gaps = 16/297 (5%) Query: 53 PPATFFTIADVLAKLDRQRGRGPNA---------IRTASLTPPNTATDAVPAAKPLPPVG 103 P A FFTI VLAKLD QR P + A+LTP ATD P + P VG Sbjct: 55 PQAKFFTINGVLAKLDAQRNGKPTTNTSRDTVGDVELAALTPDGIATD-TPPIQITPTVG 113 Query: 104 AEPFGLFTFRAPENGLWRKWRGLESDLAKEQSVLEQCRESATGCPPQAAQFLRLIGAVKS 163 EPFGLF FRAPE LWRKWRG+ +D+AK+ L +C A C P AA+F RL+ + K+ Sbjct: 114 PEPFGLFVFRAPEGTLWRKWRGVAADMAKDHDSLARCSYDAATCSPAAARFARLVTSAKA 173 Query: 164 RSGRDRLDEANRAVNQAIRYVSDFAQHGEADRWTAPLATFATGKGDCEDYAIAKYTALSE 223 +SGR +L++ N+ VN +IRYV+D QHG DRW++ LA+F TG GDCEDYAIAKY AL E Sbjct: 174 KSGRAQLEDINQGVNLSIRYVNDTMQHGVPDRWSSALASFTTGAGDCEDYAIAKYAALRE 233 Query: 224 AGFPREDLRLVLGRDRTIRQDHAVLAARLDGHWLILDSRRSELIDDGELGNFTPMFAIND 283 AG+ E LRLVL RDR +RQDHAVLA R + WLI+D+R + L +D E+ +FTP+FAIN+ Sbjct: 234 AGYAAETLRLVLVRDRAVRQDHAVLAVRHEDKWLIMDNRSARLREDSEISSFTPLFAINE 293 Query: 284 RGVQLFAAPYAKRLPLGDELDAAPAAANAVETEWTGAEALDAASP---LLGFLPVLM 337 RGVQLFA PYA R G DA+PA WTG++ AA+P +G P+LM Sbjct: 294 RGVQLFAVPYANRDTDGAS-DASPATDALGTMAWTGSDT--AATPAGGAIGERPLLM 347 >ref|ZP_08629864.1| hypothetical protein CSIRO_2961 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07507.1| hypothetical protein CSIRO_2961 [Bradyrhizobiaceae bacterium SG-6C] Length = 362 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 125/264 (47%), Positives = 163/264 (61%), Gaps = 12/264 (4%) Query: 55 ATFFTIADVLAKLDRQRGRGPNA-IRTASLTPPNTATDA------VPAAKPLPPVGAEPF 107 A FF+I VLAKLD + PN +R AS +DA A++ P EPF Sbjct: 64 ARFFSINSVLAKLDGKSV--PNEPVRLASAASDTIVSDAPSEFTRSEASQSSP---NEPF 118 Query: 108 GLFTFRAPENGLWRKWRGLESDLAKEQSVLEQCRESATGCPPQAAQFLRLIGAVKSRSGR 167 GLFTFRAPE LWRKWR ++ D+ KE S + C+ ++ C A +FL ++ G Sbjct: 119 GLFTFRAPEGILWRKWRNVKKDIDKEMSEIANCKADSSACSGAARRFLLMVDGALEHDGA 178 Query: 168 DRLDEANRAVNQAIRYVSDFAQHGEADRWTAPLATFATGKGDCEDYAIAKYTALSEAGFP 227 RL+ NR VN AIRY SD QHGE D W++PLA+ G+GDCEDYAIAKY L E+G P Sbjct: 179 ARLETVNRLVNTAIRYTSDLIQHGEVDLWSSPLASLRAGRGDCEDYAIAKYMVLRESGVP 238 Query: 228 REDLRLVLGRDRTIRQDHAVLAARLDGHWLILDSRRSELIDDGELGNFTPMFAINDRGVQ 287 +DLR++L RDR +R+DHAVLA R DG W ILD+RR+ L D +L F+P+ A++ GV Sbjct: 239 EQDLRILLVRDRAVREDHAVLAVRKDGGWTILDNRRATLFGDSDLPQFSPLVALDSGGVS 298 Query: 288 LFAAPYAKRLPLGDELDAAPAAAN 311 LFA+PY + D APA+A+ Sbjct: 299 LFASPYLSQRMNSDAKAVAPASAD 322 >ref|YP_485860.1| hypothetical protein RPB_2244 [Rhodopseudomonas palustris HaA2] gb|ABD06949.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 328 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 130/261 (49%), Positives = 161/261 (61%), Gaps = 5/261 (1%) Query: 53 PPATFFTIADVLAKLDRQRGRGPNAIRTASLTPPNTATDAVPAAKPLPPVGA---EPFGL 109 P FFTI VLAK D R + AS T P + + A LP + A EPFGL Sbjct: 54 PHVRFFTINAVLAKHDGMRKSASGPVELAS-TDPASRSAVASDAPVLPAIEAPTDEPFGL 112 Query: 110 FTFRAPENGLWRKWRGLESDLAKEQSVLEQCRESATGCPPQAAQFLRLI-GAVKSRSGRD 168 TFRAPE LW KWR +++ + + + +C + C P +F L+ GA + R Sbjct: 113 MTFRAPEGVLWTKWRAVKAAMDADAGSIVRCNSDDSRCSPSERRFTALMRGARDASDARA 172 Query: 169 RLDEANRAVNQAIRYVSDFAQHGEADRWTAPLATFATGKGDCEDYAIAKYTALSEAGFPR 228 R + NRAVNQA+RYV+D+ QHG AD WT+PL T +G GDCEDYAIAKY L AG Sbjct: 173 RAELVNRAVNQAVRYVNDYQQHGVADLWTSPLQTLRSGIGDCEDYAIAKYALLRSAGADE 232 Query: 229 EDLRLVLGRDRTIRQDHAVLAARLDGHWLILDSRRSELIDDGELGNFTPMFAINDRGVQL 288 DL+LVL RD +RQDHAVLA RLDG WL+LD+RRS L++ +L +F P+FAI+ RGV L Sbjct: 233 ADLKLVLVRDLAVRQDHAVLAVRLDGRWLVLDNRRSSLLEGRDLQSFMPLFAIDHRGVSL 292 Query: 289 FAAPYAKRLPLGDELDAAPAA 309 FAAPYA R E D APAA Sbjct: 293 FAAPYAARPHHESESDMAPAA 313