BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0011.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003751001.1| diguanylate kinase, GGDEF domain [Ralstonia ... 557 e-156 emb|CCA85527.1| putative Diguanylate kinase, GGDEF domain [Ralst... 554 e-155 ref|ZP_02379915.1| diguanylate cyclase (GGDEF domain) [Burkholde... 538 e-151 ref|YP_004751719.1| GGDEF domain-containing protein [Collimonas ... 534 e-149 ref|ZP_02907837.1| diguanylate cyclase [Burkholderia ambifaria M... 530 e-148 >ref|YP_003751001.1| diguanylate kinase, GGDEF domain [Ralstonia solanacearum PSI07] emb|CBJ49684.1| putative Diguanylate kinase, GGDEF domain [Ralstonia solanacearum PSI07] Length = 467 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 275/378 (72%), Positives = 321/378 (84%) Query: 2 LHEPPNALRLITQAYTSLLIIGFALLPTQFIAYLYFQQDPALKFEDHLFHEFAIAVATLE 61 LHEPP + IT+AY LL++GFAL+P IAYL++ QDPALKFE+H FHE AIA ATLE Sbjct: 7 LHEPPAVIGWITKAYARLLLVGFALIPGVLIAYLFYFQDPALKFENHPFHELAIAAATLE 66 Query: 62 GLFVTYVTWRCYRSSGEPLLRWLTLGFLAFVLIYSLHGAFTGMAHRNIWLFLLYGPASRL 121 GLFVTYVTWRCYR+SGEPLLRWLTLGF FVLIY+LHGAFTG+AH NIWLFLLYGPASRL Sbjct: 67 GLFVTYVTWRCYRTSGEPLLRWLTLGFFGFVLIYTLHGAFTGLAHHNIWLFLLYGPASRL 126 Query: 122 AMSILLFVGLLSYNQPSDELEKRSDTRAWLMWIGLFLTVDLAVALVAYSRYAGHPVVRLS 181 AMSILL +GLLSYN+PSD ++RS R WL W+ LFL +D+AVA ++YS AG VRLS Sbjct: 127 AMSILLLIGLLSYNRPSDHADRRSSPRTWLPWVALFLAIDVAVAYLSYSPIAGALAVRLS 186 Query: 182 MEGGALLFSALNVAALLMRRIHSPLMLVFGVSVTWFALSSLAFILAAPWNHMWWLAHAIF 241 +EGGAL+FS LNV L+ RRI SPLM++FG+SVT FALSSLAFILA PWNHMWWLAHAIF Sbjct: 187 LEGGALVFSMLNVLVLMSRRIRSPLMVIFGISVTSFALSSLAFILAKPWNHMWWLAHAIF 246 Query: 242 AGGFFLLSYGVVRAFRTTQSFATIYSQEEMTARLAKSMADTQKALQQVQMSNQRLERVAA 301 AGGFFLLSYGV++AFRTT+SF+TIYSQEE+ ARLA++M T++ALQ++Q +NQ+LE +AA Sbjct: 247 AGGFFLLSYGVIQAFRTTRSFSTIYSQEELMARLAEAMDRTERALQELQRTNQKLEHLAA 306 Query: 302 TDPLTGAGNRRHFIEHIGAEIARAKRTGAPLALLSLDLDHFKDINDSRGHSVGDEVLRVF 361 TDPLTGA NRR FIE + EIARAKR GAP +LL+LDLDHFK INDS GH VGDEVL+ F Sbjct: 307 TDPLTGAANRRQFIERVETEIARAKRGGAPFSLLALDLDHFKVINDSYGHQVGDEVLKGF 366 Query: 362 VRKCLEAIRPYDSVARVG 379 V+KC +AIRPYD ARVG Sbjct: 367 VKKCFDAIRPYDGFARVG 384 >emb|CCA85527.1| putative Diguanylate kinase, GGDEF domain [Ralstonia syzygii R24] Length = 467 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 272/378 (71%), Positives = 320/378 (84%) Query: 2 LHEPPNALRLITQAYTSLLIIGFALLPTQFIAYLYFQQDPALKFEDHLFHEFAIAVATLE 61 LHEPP + IT+AY LL++GFAL+P IAYL++ QDPALKFE+H FHE AIA ATLE Sbjct: 7 LHEPPAVIGWITKAYARLLLVGFALIPGVLIAYLFYFQDPALKFENHPFHELAIAAATLE 66 Query: 62 GLFVTYVTWRCYRSSGEPLLRWLTLGFLAFVLIYSLHGAFTGMAHRNIWLFLLYGPASRL 121 GLFVTYVTWRCY++SGEPLLRWLTLGF FVLIY+LHGAFTG+AH NIWLFLLYGPASRL Sbjct: 67 GLFVTYVTWRCYQTSGEPLLRWLTLGFFGFVLIYTLHGAFTGLAHHNIWLFLLYGPASRL 126 Query: 122 AMSILLFVGLLSYNQPSDELEKRSDTRAWLMWIGLFLTVDLAVALVAYSRYAGHPVVRLS 181 MSILL +GLLSYN+PSD ++RS R WL W+ LF+ +D+AVA ++YS AG VRLS Sbjct: 127 TMSILLLIGLLSYNRPSDHADRRSSPRTWLPWVALFVAIDVAVAYLSYSPIAGALAVRLS 186 Query: 182 MEGGALLFSALNVAALLMRRIHSPLMLVFGVSVTWFALSSLAFILAAPWNHMWWLAHAIF 241 +EGGAL+FS LNV L+ RRI SPLM++FG+SVT FALSSLAFILA PWNHMWWLAHAIF Sbjct: 187 LEGGALVFSMLNVLVLMSRRIRSPLMVIFGISVTSFALSSLAFILAKPWNHMWWLAHAIF 246 Query: 242 AGGFFLLSYGVVRAFRTTQSFATIYSQEEMTARLAKSMADTQKALQQVQMSNQRLERVAA 301 AGGFFLLSYGV++AFRTT+SF+TIYSQEE+ ARLA++M T++ALQ++Q +NQ+LE +AA Sbjct: 247 AGGFFLLSYGVIQAFRTTRSFSTIYSQEELMARLAEAMDRTERALQELQRTNQKLEHLAA 306 Query: 302 TDPLTGAGNRRHFIEHIGAEIARAKRTGAPLALLSLDLDHFKDINDSRGHSVGDEVLRVF 361 TDPLTGA NRR FIE + EIARAKR GAP +LL+LDLDHFK INDS GH VGDEVL+ F Sbjct: 307 TDPLTGAANRRQFIERVETEIARAKRGGAPFSLLALDLDHFKVINDSYGHQVGDEVLKGF 366 Query: 362 VRKCLEAIRPYDSVARVG 379 V+KC +AIRPYD ARVG Sbjct: 367 VKKCFDAIRPYDGFARVG 384 >ref|ZP_02379915.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu] Length = 468 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 259/368 (70%), Positives = 304/368 (82%) Query: 12 ITQAYTSLLIIGFALLPTQFIAYLYFQQDPALKFEDHLFHEFAIAVATLEGLFVTYVTWR 71 IT+ Y LL+IGFAL+P IAYLY+ QDP+LKFE+H FHE AIA ATLEG FVTYV WR Sbjct: 18 ITRGYARLLLIGFALVPLYLIAYLYYFQDPSLKFENHAFHELAIAAATLEGGFVTYVCWR 77 Query: 72 CYRSSGEPLLRWLTLGFLAFVLIYSLHGAFTGMAHRNIWLFLLYGPASRLAMSILLFVGL 131 CYR SGEPLLRWLTLGFL F LIY+LHGAFTGMAH NIWLFLLYGPASRL MSIL+ VG Sbjct: 78 CYRLSGEPLLRWLTLGFLGFSLIYALHGAFTGMAHHNIWLFLLYGPASRLVMSILVLVGQ 137 Query: 132 LSYNQPSDELEKRSDTRAWLMWIGLFLTVDLAVALVAYSRYAGHPVVRLSMEGGALLFSA 191 L+Y+Q +D R+D R W WI LF+ VD+AVA +AYS AG P VRLSMEGGAL+ A Sbjct: 138 LAYSQAADSEATRTDRRVWAAWIALFVLVDVAVAGIAYSPVAGRPWVRLSMEGGALVLFA 197 Query: 192 LNVAALLMRRIHSPLMLVFGVSVTWFALSSLAFILAAPWNHMWWLAHAIFAGGFFLLSYG 251 +NV AL++RRIHSPLM ++G+SVT FALSSLAFIL PWNHMWWLAHAIFA GFFLLS+G Sbjct: 198 VNVTALVLRRIHSPLMTIYGISVTSFALSSLAFILGRPWNHMWWLAHAIFAAGFFLLSFG 257 Query: 252 VVRAFRTTQSFATIYSQEEMTARLAKSMADTQKALQQVQMSNQRLERVAATDPLTGAGNR 311 VV+AF TT+SF+ IYSQEE+ ARL +M+ T++ALQ++Q +N++LE +AATDPLTGA NR Sbjct: 258 VVQAFHTTRSFSKIYSQEELFARLRDAMSRTERALQELQRTNEKLEHMAATDPLTGAANR 317 Query: 312 RHFIEHIGAEIARAKRTGAPLALLSLDLDHFKDINDSRGHSVGDEVLRVFVRKCLEAIRP 371 RHF++ + EIA AKR GAP ++LSLDLDHFK INDS GH GDEVL+ FV+KCL+AIRP Sbjct: 318 RHFLDRVETEIALAKRNGAPFSVLSLDLDHFKSINDSYGHQAGDEVLQRFVKKCLDAIRP 377 Query: 372 YDSVARVG 379 YD VARVG Sbjct: 378 YDGVARVG 385 >ref|YP_004751719.1| GGDEF domain-containing protein [Collimonas fungivorans Ter331] gb|AEK60896.1| GGDEF domain protein [Collimonas fungivorans Ter331] Length = 482 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/374 (67%), Positives = 298/374 (79%) Query: 6 PNALRLITQAYTSLLIIGFALLPTQFIAYLYFQQDPALKFEDHLFHEFAIAVATLEGLFV 65 P +R +T+ Y LLI GFAL P IAYLY QDP LKFEDHLFHE AIA ATLEG+FV Sbjct: 26 PEVIRRVTKIYARLLIAGFALSPAFLIAYLYLFQDPGLKFEDHLFHEIAIAAATLEGIFV 85 Query: 66 TYVTWRCYRSSGEPLLRWLTLGFLAFVLIYSLHGAFTGMAHRNIWLFLLYGPASRLAMSI 125 TYV+WRCY SSGEPLLRWLTLGFL F LIY+LHG FTGMAH NIWLFLLYGPASRLAM+I Sbjct: 86 TYVSWRCYLSSGEPLLRWLTLGFLGFTLIYALHGVFTGMAHHNIWLFLLYGPASRLAMAI 145 Query: 126 LLFVGLLSYNQPSDELEKRSDTRAWLMWIGLFLTVDLAVALVAYSRYAGHPVVRLSMEGG 185 LL +GLLS+NQ D E+R + R W +WI FL D+AVA +AYS AG P VRL+MEGG Sbjct: 146 LLLIGLLSFNQEPDAPEQRINPRPWRIWIAAFLLTDIAVAFIAYSAIAGSPAVRLTMEGG 205 Query: 186 ALLFSALNVAALLMRRIHSPLMLVFGVSVTWFALSSLAFILAAPWNHMWWLAHAIFAGGF 245 AL FSA+N+ +L RI SPLM +FG+S+ F LSSLAFIL PWNHMWWLAHAIFAGGF Sbjct: 206 ALFFSAVNIILMLAGRIRSPLMTIFGISIVLFGLSSLAFILGKPWNHMWWLAHAIFAGGF 265 Query: 246 FLLSYGVVRAFRTTQSFATIYSQEEMTARLAKSMADTQKALQQVQMSNQRLERVAATDPL 305 F LSYG+++AF TT+SF++IY+QEEM RLA +M T+ ALQ++Q SN+ LE +A+TDPL Sbjct: 266 FFLSYGIIQAFHTTRSFSSIYNQEEMVNRLAMAMVRTESALQELQHSNRMLEHLASTDPL 325 Query: 306 TGAGNRRHFIEHIGAEIARAKRTGAPLALLSLDLDHFKDINDSRGHSVGDEVLRVFVRKC 365 TGA NRRHFIE + AEIAR++R +LL+LDLD+FK IND GH VGDEVL+ FV+KC Sbjct: 326 TGASNRRHFIERVDAEIARSRRDNLSFSLLALDLDNFKAINDHYGHQVGDEVLQGFVQKC 385 Query: 366 LEAIRPYDSVARVG 379 LE IRPYDSVAR+G Sbjct: 386 LEEIRPYDSVARMG 399 >ref|ZP_02907837.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gb|EDT41026.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 469 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 265/376 (70%), Positives = 306/376 (81%) Query: 4 EPPNALRLITQAYTSLLIIGFALLPTQFIAYLYFQQDPALKFEDHLFHEFAIAVATLEGL 63 +P +RLI Q Y LL++ FAL P I Y++F QDPALKFE+H FHE AIA ATLEGL Sbjct: 11 DPTVVVRLIAQTYARLLLVAFALTPACLIGYVFFFQDPALKFENHAFHEMAIAAATLEGL 70 Query: 64 FVTYVTWRCYRSSGEPLLRWLTLGFLAFVLIYSLHGAFTGMAHRNIWLFLLYGPASRLAM 123 FVTYVTWRCYRSSGEPLLRW+TLGF F +IY+LHGAFTG AH NIWLFLLYGPASRL M Sbjct: 71 FVTYVTWRCYRSSGEPLLRWMTLGFFGFAVIYALHGAFTGFAHHNIWLFLLYGPASRLVM 130 Query: 124 SILLFVGLLSYNQPSDELEKRSDTRAWLMWIGLFLTVDLAVALVAYSRYAGHPVVRLSME 183 S+LL +GLLSY +P D KR DTR WL W+ FL VD+ VAL+A S AG VRLSME Sbjct: 131 SVLLLIGLLSYRRPPDPTSKRVDTRQWLAWVAAFLVVDVLVALLANSSVAGDLGVRLSME 190 Query: 184 GGALLFSALNVAALLMRRIHSPLMLVFGVSVTWFALSSLAFILAAPWNHMWWLAHAIFAG 243 GGAL+ S+LNVA L++RRI SPLML++G+SVT FAL+SLAFIL PWNHMWWLAHAIFAG Sbjct: 191 GGALVLSSLNVAILMLRRIRSPLMLIYGISVTAFALASLAFILGRPWNHMWWLAHAIFAG 250 Query: 244 GFFLLSYGVVRAFRTTQSFATIYSQEEMTARLAKSMADTQKALQQVQMSNQRLERVAATD 303 GFFLLSYGVV+AF TT+SF TIYSQEE+ ARLA++MA T+ ALQ++Q +NQ LE +AATD Sbjct: 251 GFFLLSYGVVQAFLTTRSFETIYSQEELMARLAEAMARTESALQELQRTNQTLEHLAATD 310 Query: 304 PLTGAGNRRHFIEHIGAEIARAKRTGAPLALLSLDLDHFKDINDSRGHSVGDEVLRVFVR 363 PLTGA NRR FIE + AEIARAKR GAP +LL+LDLD+FK IND GH VGD VL+ FV+ Sbjct: 311 PLTGASNRRKFIECVEAEIARAKRDGAPFSLLALDLDNFKWINDCYGHQVGDRVLQGFVQ 370 Query: 364 KCLEAIRPYDSVARVG 379 CL+AIRPYD VARVG Sbjct: 371 TCLDAIRPYDDVARVG 386