BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0009.p (540 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001243145.1| diguanylate cyclase/phosphodiesterase [Brady... 375 e-101 ref|ZP_08627528.1| hypothetical protein CSIRO_0589 [Bradyrhizobi... 369 1e-99 ref|YP_001202893.1| hypothetical protein BRADO0726 [Bradyrhizobi... 366 6e-99 ref|ZP_01548216.1| hypothetical protein SIAM614_06593 [Stappia a... 362 8e-98 ref|YP_766094.1| GGDEF/EAL domain-containing protein [Rhizobium ... 361 2e-97 >ref|YP_001243145.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gb|ABQ39239.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 736 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/437 (45%), Positives = 280/437 (64%), Gaps = 1/437 (0%) Query: 90 IDARTIAEGDVRDLARHDPLTGLPNRRLFDEKL-DLCAGLATDTHQVAVLMLGLDGLKRI 148 I R AE + LA+HD LTGLP+R L +K+ D + + ++AVL+LGLD K I Sbjct: 291 ITERKRAEARLAFLAQHDALTGLPSRNLLRQKIEDKLGQMRRGSEKMAVLVLGLDNFKSI 350 Query: 149 KDTHGHEAVDKALCELATRLIDILRKDGLLARIGGDEFGIVLPSISSLEDPANLARRMVA 208 DT GH A D+ L + RL ILR++ ++AR+ DEF IV ++ ED A L RR++ Sbjct: 351 NDTLGHAAGDRLLRGVGKRLRSILRQEDVVARLNSDEFAIVHGGLARPEDAAQLCRRLLQ 410 Query: 209 SAADTFAIETGAAELSLGIGIAIAPLDGVNPHELVRRAERALYRAQSDGRSRVRFFEPDM 268 + AD + I+ + + +GIA+AP DG + +L++ A+ AL RA+++ R +FE M Sbjct: 411 AIADPYLIDGSSVTIGATVGIAMAPNDGDDAEKLLKNADMALSRAKTETRGSFSYFETGM 470 Query: 269 DIHVERRINIERELRSAIAADIIEPHYQPVVSLESNRIVGFEALARWENRTLGHVPPDVF 328 D + R IE ELR AI D+++P+YQP++ L + RI GFEAL RW + G +PP F Sbjct: 471 DARAQSRRKIEIELRDAIQRDVLQPYYQPLIDLSTGRITGFEALVRWPHPERGMIPPSEF 530 Query: 329 IPIAEETGLIDALGDQVFRRACLDATAWPKTFSLAFNISPVQLRDSALGGRIISILEQTG 388 IP+AE+TGLI ALG + RRAC DA WP +A N+SP+Q R + ++ +L+Q+G Sbjct: 531 IPVAEDTGLISALGRVMLRRACNDAANWPDEVRVAVNMSPLQFRVGNVLSLVMDVLKQSG 590 Query: 389 FSPCRLEIEITESAFVERNGAAKTVIDELRRAGVRIALDDFGTGYATLSQLLSFRLDKIK 448 P RLE+EITE+ +E++G + LR GVRI++DDFGTGY++LS L SF DKIK Sbjct: 591 LPPSRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRSFPFDKIK 650 Query: 449 IDRSFVSHLDESTDSRVIVRAILGLAKGFGLTTTAEGVEDEGQLVYLVANGCTEGQGYLF 508 +D+SF+ L + +++ IVR+I+ L KG G+T TAEGVE E +L L A GC EGQGYLF Sbjct: 651 VDQSFIRDLAANREAQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCHEGQGYLF 710 Query: 509 SGPVQAAGIPALLDRQA 525 S P A I LL+ Q+ Sbjct: 711 SRPRPNAEIVGLLEAQS 727 >ref|ZP_08627528.1| hypothetical protein CSIRO_0589 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09782.1| hypothetical protein CSIRO_0589 [Bradyrhizobiaceae bacterium SG-6C] Length = 736 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 206/442 (46%), Positives = 277/442 (62%), Gaps = 3/442 (0%) Query: 90 IDARTIAEGDVRDLARHDPLTGLPNRRLFDEKLD-LCAGLATDTHQVAVLMLGLDGLKRI 148 I R AE + +A+HD LTGLPNR L ++LD L A +VAVL L LD K I Sbjct: 292 ITERKRAEARLAFMAQHDGLTGLPNRILLRQRLDELLAHTRRSGDKVAVLFLDLDNFKGI 351 Query: 149 KDTHGHEAVDKALCELATRLIDILRKDGLLARIGGDEFGIVLPSISSLEDPANLARRMVA 208 DT GH DK L + RL LR++ +AR+G DEF IV ++ ED A LARR++ Sbjct: 352 NDTLGHAVGDKLLKGVTKRLRSSLREEDAIARLGSDEFAIVQAGVNRPEDVAFLARRLID 411 Query: 209 SAADTFAIETGAAELSLGIGIAIAPLDGVNPHELVRRAERALYRAQSDGRSRVRFFEPDM 268 + ++ + + IGIAIAP DG + +L++ A+ AL RA+SDG FFE +M Sbjct: 412 AISEPYLFDGHTIISGACIGIAIAPGDGDDAEKLLKNADMALSRAKSDGHGTFSFFESEM 471 Query: 269 DIHVERRINIERELRSAIAADIIEPHYQPVVSLESNRIVGFEALARWENRTLGHVPPDVF 328 D + R IE +LR AI +I++P+YQP+V L++ RI GFEAL RW ++ G +PP F Sbjct: 472 DARAQTRRRIELDLRGAIEGNILQPYYQPLVDLKTGRITGFEALVRWPDQERGMIPPSEF 531 Query: 329 IPIAEETGLIDALGDQVFRRACLDATAWPKTFSLAFNISPVQLRDSALGGRIISILEQTG 388 IP+AEETGLI+A+G + RRAC+DA WP +A N+SP+Q R L ++ L+ +G Sbjct: 532 IPVAEETGLINAIGGLMLRRACMDAAQWPDDVRVAVNLSPLQFRVGNLLSVVMDALKTSG 591 Query: 389 FSPCRLEIEITESAFVERNGAAKTVIDELRRAGVRIALDDFGTGYATLSQLLSFRLDKIK 448 SP RLE+EITE+ ++++ + LR GVRI++DDFGTGY++LS L SF DKIK Sbjct: 592 LSPKRLELEITETVLLDKSDQVLATLHALRALGVRISMDDFGTGYSSLSYLRSFPFDKIK 651 Query: 449 IDRSFVSHLDESTDSRVIVRAILGLAKGFGLTTTAEGVEDEGQLVYLVANGCTEGQGYLF 508 IDRSFV LD + D + I+R+I+ L G G+T TAEGVE E +L L A GC EGQG+LF Sbjct: 652 IDRSFVQDLDSNHDGQAIMRSIISLGMGLGVTITAEGVETEAELSCLRAEGCHEGQGFLF 711 Query: 509 SGPVQAAGIPALLDRQARRGPV 530 S I ALL QA+R V Sbjct: 712 SRARPNEEIVALL--QAQREAV 731 >ref|YP_001202893.1| hypothetical protein BRADO0726 [Bradyrhizobium sp. ORS 278] emb|CAL74653.1| Conserved hypothetical protein; putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains [Bradyrhizobium sp. ORS 278] Length = 717 Score = 366 bits (939), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 198/445 (44%), Positives = 277/445 (62%), Gaps = 3/445 (0%) Query: 90 IDARTIAEGDVRDLARHDPLTGLPNRRLFDEKLD-LCAGLATDTHQVAVLMLGLDGLKRI 148 I R AE + LA+HD LTGLP+R L +++D + + ++AVL+LGLD K I Sbjct: 267 ITERKRAEARLAFLAQHDALTGLPSRNLLRQQIDDKLIQMRRGSEKMAVLVLGLDNFKSI 326 Query: 149 KDTHGHEAVDKALCELATRLIDILRKDGLLARIGGDEFGIVLPSISSLEDPANLARRMVA 208 DT GH D+ L + RL ILR++ ++AR+ DEF +V ++ ED A L RR++ Sbjct: 327 NDTLGHAIGDRLLRGVGKRLRSILRQEDIVARLNSDEFAVVQGGLARPEDAAQLCRRLLQ 386 Query: 209 SAADTFAIETGAAELSLGIGIAIAPLDGVNPHELVRRAERALYRAQSDGRSRVRFFEPDM 268 + AD + I+ + + IGIA+AP DG + +L++ A+ AL RA+++ R +FE M Sbjct: 387 ALADPYLIDGSSVTIGATIGIAMAPNDGDDAEKLLKNADMALSRAKTETRGTFSYFETGM 446 Query: 269 DIHVERRINIERELRSAIAADIIEPHYQPVVSLESNRIVGFEALARWENRTLGHVPPDVF 328 D + R IE ELR AI D+++PHYQP++ L + RI GFEAL RW + G +PP F Sbjct: 447 DARAQSRRKIEIELRDAIQRDLLQPHYQPLIDLSTGRITGFEALVRWPHPERGMIPPSEF 506 Query: 329 IPIAEETGLIDALGDQVFRRACLDATAWPKTFSLAFNISPVQLRDSALGGRIISILEQTG 388 IPIAEETGLI LG + R+AC DA WP +A N+SP+Q R + ++ L+Q+G Sbjct: 507 IPIAEETGLISGLGRSMLRQACSDAAKWPDEVRVAVNMSPLQFRVGNVLSLVMDALKQSG 566 Query: 389 FSPCRLEIEITESAFVERNGAAKTVIDELRRAGVRIALDDFGTGYATLSQLLSFRLDKIK 448 RLE+EITE+ +E++G + LR GVRI++DDFGTGY++LS L SF DKIK Sbjct: 567 LPASRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRSFPFDKIK 626 Query: 449 IDRSFVSHLDESTDSRVIVRAILGLAKGFGLTTTAEGVEDEGQLVYLVANGCTEGQGYLF 508 +D+SF+ L + +++ IVR+I+ L KG G+T TAEGVE E +L L A GC E QGYLF Sbjct: 627 VDQSFIRDLAANREAQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCHEAQGYLF 686 Query: 509 SGPVQAAGIPALL--DRQARRGPVT 531 S P A I LL R A GP + Sbjct: 687 SRPRPNAEIVGLLLAQRDASGGPSS 711 >ref|ZP_01548216.1| hypothetical protein SIAM614_06593 [Stappia aggregata IAM 12614] gb|EAV43431.1| hypothetical protein SIAM614_06593 [Stappia aggregata IAM 12614] Length = 495 Score = 362 bits (930), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 207/478 (43%), Positives = 281/478 (58%), Gaps = 6/478 (1%) Query: 57 VLDDIIFIVFVAFLLSIALSIFSVRRYRELARGIDARTIAEGDVRDLARHDPLTGLPNRR 116 D I +V + S+ ++ RR R + + AR+ A + LA+HDPLTGLPNRR Sbjct: 17 TFDFITSLVLGIAIFSLGYGAWATRRLR---KELKARSSAHSEALALAQHDPLTGLPNRR 73 Query: 117 -LFDEKLDLCAGLATDTHQVAVLMLGLDGLKRIKDTHGHEAVDKALCELATRLIDILRKD 175 L + DL + D + AV+ML LDG K I D +GH D L A RL + L KD Sbjct: 74 RLLEAFADLTYEVKPDCFR-AVMMLDLDGFKPINDVYGHAFGDNLLRSFADRLAETLGKD 132 Query: 176 GLLARIGGDEFGIVLPSISSLEDPANLARRMVASAADTFAIETGAAELSLGIGIAIAPLD 235 G++AR+GGDEF IV P D A ARR++ D F + GIGIA+ P D Sbjct: 133 GIVARLGGDEFAIVSPVFKEKSDVAGFARRLITRINDRFEFGNRQISIGSGIGIALYPHD 192 Query: 236 GVNPHELVRRAERALYRAQSDGRSRVRFFEPDMDIHVERRINIERELRSAIAADIIEPHY 295 G EL+RRA+ ALYRA+S GRS RFFE DMD + R +E+ LR AI+ ++ +Y Sbjct: 193 GHAITELLRRADIALYRAKSSGRSTYRFFEVDMDASILHRTLLEQRLRRAISDQEVKAYY 252 Query: 296 QPVVSLESNRIVGFEALARWENRTLGHVPPDVFIPIAEETGLIDALGDQVFRRACLDATA 355 QP++ ++S RI GFEALARW + G VPP FIPIAE+ G+I L + AC A Sbjct: 253 QPILDMDSGRIAGFEALARWTDTDFGKVPPLQFIPIAEDCGIISELTQHLLEDACKVAAN 312 Query: 356 WPKTFSLAFNISPVQLRDSALGGRIISILEQTGFSPCRLEIEITESAFVERNGAAKTVID 415 WP L+FN+SPVQL+D AL +I +IL++ FSP RL +EITE++ ++ +AK ++ Sbjct: 313 WPDDLYLSFNLSPVQLQDPALPLQISAILKKFEFSPSRLVLEITETSLLKNPESAKRILT 372 Query: 416 ELRRAGVRIALDDFGTGYATLSQLLSFRLDKIKIDRSFVSHLDESTDSRVIVRAILGLAK 475 EL AG+ IALDDFG G+++LS L F + K+KID+SF + E IV AIL L+K Sbjct: 373 ELTEAGISIALDDFGAGHSSLSYLRDFPIKKVKIDKSFTERMLEDKQCAAIVEAILVLSK 432 Query: 476 GFGLTTTAEGVEDEGQLVYLVANGCTEGQGYLFSGPVQAAGIPALLDRQAR-RGPVTE 532 G + AEG+E+ L +NGC GQG+L++ V + LL Q R P +E Sbjct: 433 GLDIDAVAEGIEESAVHDALNSNGCHYGQGFLYAAAVTSEEASLLLASQVDGRLPFSE 490 >ref|YP_766094.1| GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv. viciae 3841] emb|CAK05978.1| putative transmembrane sensory box GGDEF/EAL domain signalling protein [Rhizobium leguminosarum bv. viciae 3841] Length = 540 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 204/496 (41%), Positives = 296/496 (59%), Gaps = 10/496 (2%) Query: 22 DFIALFGGVVLASLLAHLYGLGPRLAQLGRRYVDSVLDDIIFIVFVAFLLSIALSIFSVR 81 + +A +L L+ + L ++ D LD + + ++ L + I+S Sbjct: 38 EIVAWLAVFLLLFCLSWFFDWHEGLDAFIEKHHDYPLDHALLALNISGFLGL---IYSAL 94 Query: 82 RYRELARGIDARTIAEGDVRDLARHDPLTGLPNRRLFDEKLDLCAGLATDTHQ--VAVLM 139 R R+L+R + R AE +V +A HD LT LPNRR D +CA +D + AV Sbjct: 95 RIRDLSREVHRRLQAEKNVDWIACHDTLTELPNRRFLDS---VCAQAMSDQREETYAVFS 151 Query: 140 LGLDGLKRIKDTHGHEAVDKALCELATRLIDILRKDGLLARIGGDEFGIVLPSISSLEDP 199 + LDG K++ D GH+ D L +A RL + ++ + R+GGDEF +VL + D Sbjct: 152 IDLDGFKKVNDLLGHDHGDAVLKTVAQRLSSLFPREHVF-RLGGDEF-VVLARRTGNPDL 209 Query: 200 ANLARRMVASAADTFAIETGAAELSLGIGIAIAPLDGVNPHELVRRAERALYRAQSDGRS 259 A L R+V+ FA A +L +G A+ P +G + E++R ++ A+Y A+ GR+ Sbjct: 210 AALGNRIVSVIGKPFAFNGVAVDLGASVGFALYPENGDDLSEVIRHSDCAMYVAKKQGRN 269 Query: 260 RVRFFEPDMDIHVERRINIERELRSAIAADIIEPHYQPVVSLESNRIVGFEALARWENRT 319 V+ F P M + +RI +E +LR+AI I P+YQP+V L++N+I+GFEALARW++ + Sbjct: 270 LVKPFVPSMQDELAKRIRVEADLRAAIRKAEIVPYYQPLVDLKTNKIIGFEALARWKSAS 329 Query: 320 LGHVPPDVFIPIAEETGLIDALGDQVFRRACLDATAWPKTFSLAFNISPVQLRDSALGGR 379 +PP+ FIP+AEE GLI L DQ+ R AC DA +WP L+FN+SP+QL D LG R Sbjct: 330 GEFIPPNEFIPVAEEAGLIVELTDQLLRHACTDALSWPSELVLSFNLSPIQLSDRLLGLR 389 Query: 380 IISILEQTGFSPCRLEIEITESAFVERNGAAKTVIDELRRAGVRIALDDFGTGYATLSQL 439 I+ IL G R+E+E+TESA ++ A+ V+D+L AGVRIALDDFGTGY++LSQL Sbjct: 390 ILKILGDVGLPAHRVELEVTESAIIQDAVTARIVLDDLVNAGVRIALDDFGTGYSSLSQL 449 Query: 440 LSFRLDKIKIDRSFVSHLDESTDSRVIVRAILGLAKGFGLTTTAEGVEDEGQLVYLVANG 499 ++R DKIKIDRSFVS + + +++AI+ L G G+T TAEG+E+E QL L G Sbjct: 450 SNYRFDKIKIDRSFVSSFETNDKQDKVIKAIIALGAGLGVTITAEGIEEESQLQRLQDLG 509 Query: 500 CTEGQGYLFSGPVQAA 515 C GQGYL P AA Sbjct: 510 CDIGQGYLLGRPAPAA 525