BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0007.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767680.1| hypothetical protein bsr1040 [Bradyrhizobium ja...    64   6e-09
ref|YP_001236892.1| hypothetical protein BBta_0720 [Bradyrhizobi...    62   3e-08
ref|YP_004110341.1| hypothetical protein Rpdx1_4052 [Rhodopseudo...    60   2e-07
ref|YP_001208629.1| hypothetical protein BRADO6819 [Bradyrhizobi...    57   1e-06
ref|YP_487657.1| hypothetical protein RPB_4053 [Rhodopseudomonas...    52   2e-05

>ref|NP_767680.1| hypothetical protein bsr1040 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46305.1| bsr1040 [Bradyrhizobium japonicum USDA 110]
          Length = 60

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 38/48 (79%)

Query: 1  MTDHLDDYMNAVARAMALPLEDAWRPAVRANLDVSLRLGGXTTSCRLP 48
          M + LDDY++AV++A+ALP+E+AWRPAVRANL+VSLRL        LP
Sbjct: 2  MAEPLDDYIDAVSKALALPIEEAWRPAVRANLEVSLRLARLVDEFALP 49


>ref|YP_001236892.1| hypothetical protein BBta_0720 [Bradyrhizobium sp. BTAi1]
 gb|ABQ32986.1| hypothetical protein BBta_0720 [Bradyrhizobium sp. BTAi1]
          Length = 59

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 1  MTDHLDDYMNAVARAMALPLEDAWRPAVRANLDVSLRLGGXTTSCRLPS 49
          M +  DDY++AV RA+ LP+E+AWRPA+RANLDVSL++        LP 
Sbjct: 1  MAEPWDDYIDAVGRALGLPIEEAWRPAIRANLDVSLKMAKLVDEFPLPD 49


>ref|YP_004110341.1| hypothetical protein Rpdx1_4052 [Rhodopseudomonas palustris DX-1]
 gb|ADU45608.1| hypothetical protein Rpdx1_4052 [Rhodopseudomonas palustris DX-1]
          Length = 59

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 1  MTDHLDDYMNAVARAMALPLEDAWRPAVRANLDVSLRLGGXTTSCRLP 48
          MTD LD Y++AVA A+ LP++ AW+PAVRANL+VSLRL        LP
Sbjct: 1  MTDSLDSYIDAVAAALGLPIDPAWKPAVRANLEVSLRLARMVDEFPLP 48


>ref|YP_001208629.1| hypothetical protein BRADO6819 [Bradyrhizobium sp. ORS 278]
 emb|CAL80414.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 63

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 31/43 (72%)

Query: 6  DDYMNAVARAMALPLEDAWRPAVRANLDVSLRLGGXTTSCRLP 48
          DDY++ V RA+ LP+ DAWRPA+RANL+VSL++        LP
Sbjct: 10 DDYIDVVGRALGLPINDAWRPAIRANLEVSLKMAKLVDEFSLP 52


>ref|YP_487657.1| hypothetical protein RPB_4053 [Rhodopseudomonas palustris HaA2]
 gb|ABD08746.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 61

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 3  DHLDDYMNAVARAMALPLEDAWRPAVRANLDVSLRLGGXTTSCRLP 48
          + LD Y+++V  A+ L ++ AW+PAVRANL+VSLRL      C LP
Sbjct: 5  NPLDSYIDSVGSALGLTIDPAWKPAVRANLEVSLRLARQVDECPLP 50