BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0005.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208631.1| putative dipeptide/oligopeptide/nickel ABC t... 540 e-152 ref|YP_001236890.1| putative dipeptide/oligopeptide/nickel ABC t... 539 e-151 ref|NP_767678.1| ABC transporter permease protein [Bradyrhizobiu... 537 e-151 ref|ZP_08628984.1| putative dipeptide ABC transporter [Bradyrhiz... 519 e-145 ref|YP_487655.1| binding-protein dependent transport system inne... 516 e-144 >ref|YP_001208631.1| putative dipeptide/oligopeptide/nickel ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL80416.1| putative dipeptide/oligopeptide/nickel ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 299 Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust. Identities = 269/299 (89%), Positives = 282/299 (94%) Query: 1 MSTVAPTVEPAGPVRTSGLAAAFEQTRYVLSENKVTGFAFALLVLIVFAALFGPYVVPYD 60 MSTVAPT+EPA RTS + A TRYVL+ENKVTGFAF LLV+I+FAA+ GP++VPYD Sbjct: 1 MSTVAPTIEPAASARTSSIVALIGHTRYVLAENKVTGFAFGLLVVILFAAVLGPWIVPYD 60 Query: 61 PLASDTAAALKPPSAAHWFGTDQLGRDIFSRVIVATRLDTFIAVASVVLVFLMGGLAGIA 120 PLASDTA+ALKPPSAAHWFGTDQLGRDIFSRV+VATRLDTFIAVASV LVF MGGLAG+A Sbjct: 61 PLASDTASALKPPSAAHWFGTDQLGRDIFSRVVVATRLDTFIAVASVALVFFMGGLAGVA 120 Query: 121 AGYFGGWTDLIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 180 AG+FGGWTD IVGR+ADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA Sbjct: 121 AGFFGGWTDRIVGRVADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 180 Query: 181 EANVRRNAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 EANVRRNAGFVQAARLSGN E RILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL Sbjct: 181 EANVRRNAGFVQAARLSGNSEMRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 Query: 241 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT 299 GVRPPTAEWGIMVAEGA FMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT Sbjct: 241 GVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT 299 >ref|YP_001236890.1| putative dipeptide/oligopeptide/nickel ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ32984.1| putative dipeptide/oligopeptide/nickel ABC transporter, permease protein [Bradyrhizobium sp. BTAi1] Length = 298 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 273/299 (91%), Positives = 283/299 (94%), Gaps = 1/299 (0%) Query: 1 MSTVAPTVEPAGPVRTSGLAAAFEQTRYVLSENKVTGFAFALLVLIVFAALFGPYVVPYD 60 MS+VAPTVEPA RTSGLAA TRYVL+ENKVTGFAF LLVLI+FAA+FGP++VPYD Sbjct: 1 MSSVAPTVEPA-VARTSGLAALIGHTRYVLAENKVTGFAFGLLVLILFAAIFGPWIVPYD 59 Query: 61 PLASDTAAALKPPSAAHWFGTDQLGRDIFSRVIVATRLDTFIAVASVVLVFLMGGLAGIA 120 PLASDTA+ALKPPSAAHWFGTDQLGRDIFSRV+VA RLDTFIAVASV LVF MGGLAG+A Sbjct: 60 PLASDTASALKPPSAAHWFGTDQLGRDIFSRVVVAARLDTFIAVASVALVFFMGGLAGVA 119 Query: 121 AGYFGGWTDLIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 180 AG+FGGWTD IVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA Sbjct: 120 AGFFGGWTDRIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 179 Query: 181 EANVRRNAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 EANVRRNAGFVQAARLSGN E RILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL Sbjct: 180 EANVRRNAGFVQAARLSGNSEMRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 239 Query: 241 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT 299 GVRPPTAEWGIMVAEGA FMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDI DPQRRT Sbjct: 240 GVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIADPQRRT 298 >ref|NP_767678.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46303.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 299 Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust. Identities = 279/299 (93%), Positives = 288/299 (96%) Query: 1 MSTVAPTVEPAGPVRTSGLAAAFEQTRYVLSENKVTGFAFALLVLIVFAALFGPYVVPYD 60 MS+VAP VEP GP RTSGL A EQTRYVL ENKVTGFAFALL++I+ AA+FGPYVVPYD Sbjct: 1 MSSVAPAVEPVGPARTSGLVAILEQTRYVLGENKVTGFAFALLIVILIAAIFGPYVVPYD 60 Query: 61 PLASDTAAALKPPSAAHWFGTDQLGRDIFSRVIVATRLDTFIAVASVVLVFLMGGLAGIA 120 PLASDTAAALK PSAAHWFGTDQLGRDIFSRV+VATRLDTFIA+ASVVLVFLMGGLAGIA Sbjct: 61 PLASDTAAALKAPSAAHWFGTDQLGRDIFSRVVVATRLDTFIAIASVVLVFLMGGLAGIA 120 Query: 121 AGYFGGWTDLIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 180 AGYFGGWTD IVGRIADTIMAFPLFVLAMGIVAALGNTVQNII+ATAIVNFPLYARVARA Sbjct: 121 AGYFGGWTDRIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIILATAIVNFPLYARVARA 180 Query: 181 EANVRRNAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 EANVRRNAGFVQAARLSGNGE+RILL HILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL Sbjct: 181 EANVRRNAGFVQAARLSGNGEFRILLVHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 Query: 241 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT 299 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT Sbjct: 241 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT 299 >ref|ZP_08628984.1| putative dipeptide ABC transporter [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08343.1| putative dipeptide ABC transporter [Bradyrhizobiaceae bacterium SG-6C] Length = 299 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 259/299 (86%), Positives = 271/299 (90%) Query: 1 MSTVAPTVEPAGPVRTSGLAAAFEQTRYVLSENKVTGFAFALLVLIVFAALFGPYVVPYD 60 MSTVAP + A + SGL A + RY+L EN VT FAF LL+LI+FAA+FGP++VPYD Sbjct: 1 MSTVAPAADVASTSQASGLKATLQHARYILGENPVTAFAFGLLILIIFAAVFGPWIVPYD 60 Query: 61 PLASDTAAALKPPSAAHWFGTDQLGRDIFSRVIVATRLDTFIAVASVVLVFLMGGLAGIA 120 PLASDTA ALKPPS AHWFGTDQLGRDI SRV+VATRLD FIA ASVVLVF MGG+AGIA Sbjct: 61 PLASDTAQALKPPSVAHWFGTDQLGRDILSRVVVATRLDFFIAAASVVLVFFMGGIAGIA 120 Query: 121 AGYFGGWTDLIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 180 AGYFGGWTD IVGRI+DTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLY RVARA Sbjct: 121 AGYFGGWTDRIVGRISDTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYVRVARA 180 Query: 181 EANVRRNAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 EANVRR AGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL Sbjct: 181 EANVRREAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 Query: 241 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT 299 GVRPPT EWGIMVAEGA FMVSGEWWIA FPGLALMIAVFCFNLLGDGLRDIVDPQRRT Sbjct: 241 GVRPPTPEWGIMVAEGATFMVSGEWWIAFFPGLALMIAVFCFNLLGDGLRDIVDPQRRT 299 >ref|YP_487655.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD08744.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 306 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 267/306 (87%), Positives = 276/306 (90%), Gaps = 7/306 (2%) Query: 1 MSTVAPTV-EPAGP------VRTSGLAAAFEQTRYVLSENKVTGFAFALLVLIVFAALFG 53 MS+VAP + EPA P VR SGL TRYVL +N+VT FAF LLV+IVFAALFG Sbjct: 1 MSSVAPPITEPAKPSTAAKPVRRSGLVEMIAHTRYVLGDNRVTAFAFGLLVVIVFAALFG 60 Query: 54 PYVVPYDPLASDTAAALKPPSAAHWFGTDQLGRDIFSRVIVATRLDTFIAVASVVLVFLM 113 PY+VPYDPLAS+TA ALKPPSAA+WFGTDQLGRDIFSRV+VATRLD FIAVASVVLVFLM Sbjct: 61 PYIVPYDPLASNTAQALKPPSAANWFGTDQLGRDIFSRVVVATRLDLFIAVASVVLVFLM 120 Query: 114 GGLAGIAAGYFGGWTDLIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPL 173 GGLAGIAAGYFGGWTD IVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPL Sbjct: 121 GGLAGIAAGYFGGWTDRIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPL 180 Query: 174 YARVARAEANVRRNAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAA 233 YARVARAEANVRR AGFV AARLSGN E RILL HILPNIMPIMIVQMSLTMGYAILNAA Sbjct: 181 YARVARAEANVRREAGFVMAARLSGNSEMRILLVHILPNIMPIMIVQMSLTMGYAILNAA 240 Query: 234 GLSFIGLGVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIV 293 GLSFIGLGVRPPTAEWGIMVAEGA FMVSGEWWIALFPGLALM AVFCFNLLGDGLRDI Sbjct: 241 GLSFIGLGVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMTAVFCFNLLGDGLRDIF 300 Query: 294 DPQRRT 299 DPQRRT Sbjct: 301 DPQRRT 306