BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0004.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767677.1| ABC transporter permease protein [Bradyrhizobiu... 631 e-179 ref|NP_946820.1| putative dipeptide transport permease [Rhodopse... 612 e-173 ref|YP_487654.1| binding-protein dependent transport system inne... 611 e-173 ref|YP_001236889.1| putative dipeptide/oligopeptide/nickel ABC t... 609 e-172 ref|YP_001208632.1| putative dipeptide/oligopeptide/nickel ABC t... 607 e-172 >ref|NP_767677.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46302.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 337 Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust. Identities = 316/337 (93%), Positives = 329/337 (97%) Query: 1 MLTLIGKRLLFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVDQIRKKLGFDKP 60 MLT+IGKRL+FAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAV+QIRKKLG D+P Sbjct: 1 MLTMIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGLDRP 60 Query: 61 LIEQFVRYTSDLAHGDLGTSLTTGQPVAAELRNRLPASAELTLLGLVVSIVIAIPLGVLA 120 LIEQF RYT+DLAHGD G SLTTGQPVAAE+RNRLPASAELTLLGL+VSIVIAIPLGVLA Sbjct: 61 LIEQFFRYTNDLAHGDFGNSLTTGQPVAAEIRNRLPASAELTLLGLIVSIVIAIPLGVLA 120 Query: 121 ATRPGSWIDHLCRVTTTAGVSLPVFFTGLVLVYLFYFRLGWSPAPLGRLDVFYSAPPTVT 180 ATRPGSW+DHLCRVTTTAGVSLPVFFTGLVLVY+FYFRLGWSPAPLGRLDVFYSAPPTVT Sbjct: 121 ATRPGSWVDHLCRVTTTAGVSLPVFFTGLVLVYVFYFRLGWSPAPLGRLDVFYSAPPTVT 180 Query: 181 GFYLVDTLIARDFEAFRSALSQLILPAVTLAIFSLAPIARMTRASMLAVLASDFVRTARA 240 GFYL+DTLIARD EAFRSALSQLILPA TLAIFSLAPIARMTRASMLAVLAS+FVRTARA Sbjct: 181 GFYLIDTLIARDLEAFRSALSQLILPATTLAIFSLAPIARMTRASMLAVLASEFVRTARA 240 Query: 241 SGLSPGKVIVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD 300 SGLSP VIVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALI+SD Sbjct: 241 SGLSPATVIVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSD 300 Query: 301 FAPVQGFVLTMAVMYVLLNLMIDILYGVIDPRVRLEG 337 FAPVQGFVLTMAVMYVLLNL+IDILYGVIDPRVRLEG Sbjct: 301 FAPVQGFVLTMAVMYVLLNLVIDILYGVIDPRVRLEG 337 >ref|NP_946820.1| putative dipeptide transport permease [Rhodopseudomonas palustris CGA009] ref|YP_001990662.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] emb|CAE26914.1| putative dipeptide transport permease protein [Rhodopseudomonas palustris CGA009] gb|ACF00187.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] Length = 337 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 303/337 (89%), Positives = 324/337 (96%) Query: 1 MLTLIGKRLLFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVDQIRKKLGFDKP 60 MLTLIGKRL+FAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAA+KEA++QIR KLG DK Sbjct: 1 MLTLIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRHKLGLDKS 60 Query: 61 LIEQFVRYTSDLAHGDLGTSLTTGQPVAAELRNRLPASAELTLLGLVVSIVIAIPLGVLA 120 L EQFVRYT++LA GDLG SLTTGQPVA E+RNRLPASAELTLLGL +++VIAIPLG++A Sbjct: 61 LPEQFVRYTTELAQGDLGQSLTTGQPVATEIRNRLPASAELTLLGLAIAVVIAIPLGIMA 120 Query: 121 ATRPGSWIDHLCRVTTTAGVSLPVFFTGLVLVYLFYFRLGWSPAPLGRLDVFYSAPPTVT 180 ATRPGSWIDHLCR+TTTAGVSLPVFFTGL+LVY+FYF+LGWSPAPLGRLDVFYSAPPTVT Sbjct: 121 ATRPGSWIDHLCRITTTAGVSLPVFFTGLLLVYVFYFKLGWSPAPLGRLDVFYSAPPTVT 180 Query: 181 GFYLVDTLIARDFEAFRSALSQLILPAVTLAIFSLAPIARMTRASMLAVLASDFVRTARA 240 GFYL+D+LIARDFE FRSALSQL+LPA TLAIFSLAPIARMTRASMLA+LASDFVRTARA Sbjct: 181 GFYLIDSLIARDFETFRSALSQLLLPAATLAIFSLAPIARMTRASMLAILASDFVRTARA 240 Query: 241 SGLSPGKVIVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD 300 SGLSP KV +TYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD Sbjct: 241 SGLSPRKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD 300 Query: 301 FAPVQGFVLTMAVMYVLLNLMIDILYGVIDPRVRLEG 337 FAPVQGFVLTMAVMYVLLNL IDILYGVIDPRVRLEG Sbjct: 301 FAPVQGFVLTMAVMYVLLNLAIDILYGVIDPRVRLEG 337 >ref|YP_487654.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD08743.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 337 Score = 611 bits (1576), Expect = e-173, Method: Compositional matrix adjust. Identities = 299/337 (88%), Positives = 328/337 (97%) Query: 1 MLTLIGKRLLFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVDQIRKKLGFDKP 60 MLT+IGKRL+FAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAA+KEA++QIR+KLG DK Sbjct: 1 MLTMIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRQKLGLDKT 60 Query: 61 LIEQFVRYTSDLAHGDLGTSLTTGQPVAAELRNRLPASAELTLLGLVVSIVIAIPLGVLA 120 L EQFVRYT++LA GDLG SLTTGQPVA E+RNRLPASAELTLLGL+++IVIAIPLG++A Sbjct: 61 LAEQFVRYTTELAQGDLGQSLTTGQPVATEIRNRLPASAELTLLGLMLAIVIAIPLGIMA 120 Query: 121 ATRPGSWIDHLCRVTTTAGVSLPVFFTGLVLVYLFYFRLGWSPAPLGRLDVFYSAPPTVT 180 ATRPGSWIDH+CRVTTTAGVSLPVFFTGL+LVY+FYF+LGWSPAPLGRLDVFYSAPP VT Sbjct: 121 ATRPGSWIDHICRVTTTAGVSLPVFFTGLLLVYVFYFKLGWSPAPLGRLDVFYSAPPNVT 180 Query: 181 GFYLVDTLIARDFEAFRSALSQLILPAVTLAIFSLAPIARMTRASMLAVLASDFVRTARA 240 GFYL+D+LIAR+FE FRSALSQL+LPA+TLAIFSLAPIARMTRASMLA+L+SDFVRTARA Sbjct: 181 GFYLIDSLIAREFETFRSALSQLLLPALTLAIFSLAPIARMTRASMLAILSSDFVRTARA 240 Query: 241 SGLSPGKVIVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD 300 SGLSPGKV +TYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALI+SD Sbjct: 241 SGLSPGKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSD 300 Query: 301 FAPVQGFVLTMAVMYVLLNLMIDILYGVIDPRVRLEG 337 FAPVQGFVLTMA+MYVLLNL+IDILYGVIDPRVRLEG Sbjct: 301 FAPVQGFVLTMAIMYVLLNLVIDILYGVIDPRVRLEG 337 >ref|YP_001236889.1| putative dipeptide/oligopeptide/nickel ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ32983.1| putative dipeptide/oligopeptide/nickel ABC transporter, permease protein [Bradyrhizobium sp. BTAi1] Length = 337 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 307/337 (91%), Positives = 320/337 (94%) Query: 1 MLTLIGKRLLFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVDQIRKKLGFDKP 60 ML+LI KRL FAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAV+QIRKKLGFDKP Sbjct: 1 MLSLIAKRLAFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGFDKP 60 Query: 61 LIEQFVRYTSDLAHGDLGTSLTTGQPVAAELRNRLPASAELTLLGLVVSIVIAIPLGVLA 120 L+EQF RYT DLAHGDLG+SLTTGQPVA E+RNRLPASAELTLLGL+VS+ IA+PLGVLA Sbjct: 61 LVEQFFRYTVDLAHGDLGSSLTTGQPVATEIRNRLPASAELTLLGLLVSVAIALPLGVLA 120 Query: 121 ATRPGSWIDHLCRVTTTAGVSLPVFFTGLVLVYLFYFRLGWSPAPLGRLDVFYSAPPTVT 180 ATRPGSWIDH CRV TTAGVSLPVFFTGLVLVY+FYFRLGWSPAPLGRLDVFYSAP VT Sbjct: 121 ATRPGSWIDHTCRVVTTAGVSLPVFFTGLVLVYVFYFRLGWSPAPLGRLDVFYSAPNAVT 180 Query: 181 GFYLVDTLIARDFEAFRSALSQLILPAVTLAIFSLAPIARMTRASMLAVLASDFVRTARA 240 GFYL+DTLIA D EAFRSALSQLILPA TLAIFSLAPIARMTRASML VL+S+FVRTARA Sbjct: 181 GFYLIDTLIAGDAEAFRSALSQLILPAATLAIFSLAPIARMTRASMLQVLSSEFVRTARA 240 Query: 241 SGLSPGKVIVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD 300 SGLSP V VTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD Sbjct: 241 SGLSPATVTVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD 300 Query: 301 FAPVQGFVLTMAVMYVLLNLMIDILYGVIDPRVRLEG 337 FAPVQGFVLTMAVMYVLLNL+IDILYGVIDPRVRLEG Sbjct: 301 FAPVQGFVLTMAVMYVLLNLVIDILYGVIDPRVRLEG 337 >ref|YP_001208632.1| putative dipeptide/oligopeptide/nickel ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL80417.1| putative dipeptide/oligopeptide/nickel ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 337 Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust. Identities = 304/337 (90%), Positives = 322/337 (95%) Query: 1 MLTLIGKRLLFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVDQIRKKLGFDKP 60 ML+L+ KRL FAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAV+QIRKKLGFDKP Sbjct: 1 MLSLVAKRLAFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGFDKP 60 Query: 61 LIEQFVRYTSDLAHGDLGTSLTTGQPVAAELRNRLPASAELTLLGLVVSIVIAIPLGVLA 120 L+EQF RYT DLAHGDLG+SLTTGQPVA E+RNRLPASAELTLLGL+VS+ IA+PLGVLA Sbjct: 61 LVEQFFRYTVDLAHGDLGSSLTTGQPVATEIRNRLPASAELTLLGLLVSVAIALPLGVLA 120 Query: 121 ATRPGSWIDHLCRVTTTAGVSLPVFFTGLVLVYLFYFRLGWSPAPLGRLDVFYSAPPTVT 180 ATRPGSWIDH CRV TTAGVSLPVFFTGLVLVY+FYFRLGWSPAPLGRLDVFYSAP +VT Sbjct: 121 ATRPGSWIDHTCRVVTTAGVSLPVFFTGLVLVYVFYFRLGWSPAPLGRLDVFYSAPNSVT 180 Query: 181 GFYLVDTLIARDFEAFRSALSQLILPAVTLAIFSLAPIARMTRASMLAVLASDFVRTARA 240 GFYL+DTLIA D EAFRSALSQLILPA TLAIFSLAP+ARMTRASML+VL+S+FVRTARA Sbjct: 181 GFYLIDTLIAGDGEAFRSALSQLILPAATLAIFSLAPVARMTRASMLSVLSSEFVRTARA 240 Query: 241 SGLSPGKVIVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD 300 SGLSP V VTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD Sbjct: 241 SGLSPSTVTVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD 300 Query: 301 FAPVQGFVLTMAVMYVLLNLMIDILYGVIDPRVRLEG 337 FAPVQGFVLTMAVMYV+LNL+IDILYGVIDPRVRLEG Sbjct: 301 FAPVQGFVLTMAVMYVVLNLVIDILYGVIDPRVRLEG 337