BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0003.p (540 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236888.1| peptide/oligopeptide/nickel ABC transporter ... 1042 0.0 ref|YP_001208633.1| peptide/oligopeptide/nickel ABC transporter ... 1038 0.0 ref|NP_767676.1| ABC transporter substrate-binding protein [Brad... 1029 0.0 ref|NP_946821.1| peptide transport system substrate-binding prot... 969 0.0 ref|YP_001990663.1| family 5 extracellular solute-binding protei... 966 0.0 >ref|YP_001236888.1| peptide/oligopeptide/nickel ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ32982.1| Putative dipeptide/oligopeptide/nickel ABC transporter, substrate-binding protein [Bradyrhizobium sp. BTAi1] Length = 541 Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/540 (92%), Positives = 516/540 (95%) Query: 1 MKRRDFLKSVSGLAAGALAPTAPAIWSPAKADARSETLLIVSEGGPNNLDIHGVGTNVPG 60 MKRRDFLKSVSGLAAGA P APA+ S AKADARSETLLIVSEGGPNNLDIHGVGTNVPG Sbjct: 2 MKRRDFLKSVSGLAAGAALPVAPAVMSAAKADARSETLLIVSEGGPNNLDIHGVGTNVPG 61 Query: 61 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFKGELAEDINIGDMSVTFKLRKNAKFHDGT 120 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFK ELAED+ IGDMS TF+LRKNAKFHDGT Sbjct: 62 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFKPELAEDMTIGDMSATFRLRKNAKFHDGT 121 Query: 121 PFTAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDDTTVRVDFLKKDKLTIPDLA 180 P TAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDD TVRVDFLKKD+LTIPDLA Sbjct: 122 PVTAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDDHTVRVDFLKKDRLTIPDLA 181 Query: 181 VIVPCVVNSELVKKNASEKDPWGLEFTKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP 240 VIVPCVVNSELVKKNA++KDPWGLEFTKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP Sbjct: 182 VIVPCVVNSELVKKNATDKDPWGLEFTKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP 241 Query: 241 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPFKDFQEMKANGKLNVVSLPFSNGIQY 300 LPKIKRVIWRMVPQAGNRRALLERGDADISYELP KDFQEMKANGKL+VVSLP SNGIQY Sbjct: 242 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPNKDFQEMKANGKLSVVSLPISNGIQY 301 Query: 301 IGMNVTKPPFDNPKVRQAMAYAMPYQKIMDAVLFGLANPMFGAAKDKPTEVAWPQPTKYY 360 IGMNVTKPPFDNPKVRQA+AYAMPYQKI+DAV+FGLANPMFGAA DK TEVAWPQPTKY Sbjct: 302 IGMNVTKPPFDNPKVRQALAYAMPYQKIIDAVMFGLANPMFGAAADKATEVAWPQPTKYA 361 Query: 361 TDMEKAKALLAEAGYANGFETTISFDLNFAGVNEPLCVLVQESLAQLGIKTTINKVPGAN 420 TDMEKAKALLAEAGY NGFETTISFDLNFA VNEPLCVLVQESLAQLGIKTTINKVPGAN Sbjct: 362 TDMEKAKALLAEAGYGNGFETTISFDLNFAQVNEPLCVLVQESLAQLGIKTTINKVPGAN 421 Query: 421 WRTELTKKEMPLFTNVFSGWLDYPEYFFYWCYHGNNSIFNTMSYKSSEMDKLIDGARVAA 480 WRTEL KKEMPLFTN+FSGWLDYPEYFFYWCYHGNNS+FNTMSYKS EMD+LI+GAR AA Sbjct: 422 WRTELNKKEMPLFTNIFSGWLDYPEYFFYWCYHGNNSVFNTMSYKSPEMDRLINGARDAA 481 Query: 481 ANGDTAAYDADVKGFVDLAFADIPRIPLYQPFVNVAMQKNVTGYQYWFHRRLDYRAMTKG 540 A GD A YDADVKGFVDLAFA++PRIPLYQPFVNVAMQKN++GYQYWFHRRLDYRA+ KG Sbjct: 482 ATGDKATYDADVKGFVDLAFAEVPRIPLYQPFVNVAMQKNISGYQYWFHRRLDYRALVKG 541 >ref|YP_001208633.1| peptide/oligopeptide/nickel ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL80418.1| Putative dipeptide/oligopeptide/nickel ABC transporter, substrate-binding protein [Bradyrhizobium sp. ORS 278] Length = 541 Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/540 (91%), Positives = 515/540 (95%) Query: 1 MKRRDFLKSVSGLAAGALAPTAPAIWSPAKADARSETLLIVSEGGPNNLDIHGVGTNVPG 60 MKRRDFLKSVSGLAAGA P APA+ S AKADARSETLLIVSEGGPNNLDIHGVGTNVPG Sbjct: 2 MKRRDFLKSVSGLAAGAALPMAPAVMSSAKADARSETLLIVSEGGPNNLDIHGVGTNVPG 61 Query: 61 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFKGELAEDINIGDMSVTFKLRKNAKFHDGT 120 YEVSWNCYDRLISHEMKSGPGG+PYYDRDKFK ELAED+ IGDMS TFKLRKNAKFHDGT Sbjct: 62 YEVSWNCYDRLISHEMKSGPGGIPYYDRDKFKPELAEDMTIGDMSATFKLRKNAKFHDGT 121 Query: 121 PFTAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDDTTVRVDFLKKDKLTIPDLA 180 P TAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDD TVRVDFLKKD+LTIPDLA Sbjct: 122 PVTAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDDYTVRVDFLKKDRLTIPDLA 181 Query: 181 VIVPCVVNSELVKKNASEKDPWGLEFTKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP 240 VIVPCVVNSELVKKNA++KDPWGLE+TKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP Sbjct: 182 VIVPCVVNSELVKKNATDKDPWGLEYTKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP 241 Query: 241 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPFKDFQEMKANGKLNVVSLPFSNGIQY 300 LPKI+RVIWRMVPQAGNRRALLERGDADISYELP KDFQEMK+NGK V+SLP SNGIQY Sbjct: 242 LPKIRRVIWRMVPQAGNRRALLERGDADISYELPNKDFQEMKSNGKHTVISLPISNGIQY 301 Query: 301 IGMNVTKPPFDNPKVRQAMAYAMPYQKIMDAVLFGLANPMFGAAKDKPTEVAWPQPTKYY 360 IGMNVTKPPFDNPKVRQA+AYAMPYQKI+DAV+FGLANPMFGA DK TEVAWPQPTKY Sbjct: 302 IGMNVTKPPFDNPKVRQALAYAMPYQKIIDAVMFGLANPMFGAPADKATEVAWPQPTKYV 361 Query: 361 TDMEKAKALLAEAGYANGFETTISFDLNFAGVNEPLCVLVQESLAQLGIKTTINKVPGAN 420 TDMEKAKALLAEAGYANGFETTISFDLNFA VNEPLCVLVQESLAQLGIKTTINKVPGAN Sbjct: 362 TDMEKAKALLAEAGYANGFETTISFDLNFAQVNEPLCVLVQESLAQLGIKTTINKVPGAN 421 Query: 421 WRTELTKKEMPLFTNVFSGWLDYPEYFFYWCYHGNNSIFNTMSYKSSEMDKLIDGARVAA 480 WRTEL KKEMPLFTN+FSGWLDYPEYFFYWCYHGNNS+FNTMSYKS EMDKLI+GAR AA Sbjct: 422 WRTELNKKEMPLFTNIFSGWLDYPEYFFYWCYHGNNSVFNTMSYKSPEMDKLINGARDAA 481 Query: 481 ANGDTAAYDADVKGFVDLAFADIPRIPLYQPFVNVAMQKNVTGYQYWFHRRLDYRAMTKG 540 + GD AAYDADVKGFVDLAFAD+PRIPLYQPFVNVAMQKN++GYQYWFHRRLDYRA+ KG Sbjct: 482 STGDKAAYDADVKGFVDLAFADVPRIPLYQPFVNVAMQKNISGYQYWFHRRLDYRALVKG 541 >ref|NP_767676.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46301.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 540 Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/540 (92%), Positives = 518/540 (95%) Query: 1 MKRRDFLKSVSGLAAGALAPTAPAIWSPAKADARSETLLIVSEGGPNNLDIHGVGTNVPG 60 MKRRDFLKSVSGLAAGA P P++ S AKADARSETLLIVSEGGPNNLDIHGVGTNVPG Sbjct: 1 MKRRDFLKSVSGLAAGAALPAMPSVISSAKADARSETLLIVSEGGPNNLDIHGVGTNVPG 60 Query: 61 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFKGELAEDINIGDMSVTFKLRKNAKFHDGT 120 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFKGELAED+ I DMSVTFKL+KNAKFHDG Sbjct: 61 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFKGELAEDMKIDDMSVTFKLKKNAKFHDGA 120 Query: 121 PFTAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDDTTVRVDFLKKDKLTIPDLA 180 P TAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFV++DD TVRVDFLKKDKLTIPDLA Sbjct: 121 PVTAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVVIDDYTVRVDFLKKDKLTIPDLA 180 Query: 181 VIVPCVVNSELVKKNASEKDPWGLEFTKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP 240 VIVPC+VNSELVKKNASEKDPWGLEFTKQQTAGSGAYKVTKWTAGTEV+MERN+DWV GP Sbjct: 181 VIVPCIVNSELVKKNASEKDPWGLEFTKQQTAGSGAYKVTKWTAGTEVIMERNEDWVGGP 240 Query: 241 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPFKDFQEMKANGKLNVVSLPFSNGIQY 300 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPFKDFQEMKA+GKLNVVSLPFSNGIQY Sbjct: 241 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPFKDFQEMKASGKLNVVSLPFSNGIQY 300 Query: 301 IGMNVTKPPFDNPKVRQAMAYAMPYQKIMDAVLFGLANPMFGAAKDKPTEVAWPQPTKYY 360 IGMNVTKPPFDN KVRQA+AYA+PYQKIMDAVLFGL NPMFGAAKDKPTEVAWPQ KY Sbjct: 301 IGMNVTKPPFDNVKVRQAIAYALPYQKIMDAVLFGLGNPMFGAAKDKPTEVAWPQQHKYN 360 Query: 361 TDMEKAKALLAEAGYANGFETTISFDLNFAGVNEPLCVLVQESLAQLGIKTTINKVPGAN 420 TDMEKAKALL EAGYANGFETTISFDLNFAGVNEPLCVLVQESLAQLGIKTTINKVPGAN Sbjct: 361 TDMEKAKALLTEAGYANGFETTISFDLNFAGVNEPLCVLVQESLAQLGIKTTINKVPGAN 420 Query: 421 WRTELTKKEMPLFTNVFSGWLDYPEYFFYWCYHGNNSIFNTMSYKSSEMDKLIDGARVAA 480 WRTEL KKEMPLFTNVFSGWLDYPEYFFYWCYHGNNS+FNTMSYKS+EMDKLIDGARVAA Sbjct: 421 WRTELNKKEMPLFTNVFSGWLDYPEYFFYWCYHGNNSVFNTMSYKSAEMDKLIDGARVAA 480 Query: 481 ANGDTAAYDADVKGFVDLAFADIPRIPLYQPFVNVAMQKNVTGYQYWFHRRLDYRAMTKG 540 A+GDTA YD DVKGFVDLA++DIPRIPLYQPFVNVAMQKN++GYQYWFHRRLDYRAM KG Sbjct: 481 ASGDTATYDTDVKGFVDLAYSDIPRIPLYQPFVNVAMQKNISGYQYWFHRRLDYRAMAKG 540 >ref|NP_946821.1| peptide transport system substrate-binding protein [Rhodopseudomonas palustris CGA009] emb|CAE26915.1| possible peptide transport system substrate-binding protein [Rhodopseudomonas palustris CGA009] Length = 556 Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/540 (83%), Positives = 496/540 (91%), Gaps = 1/540 (0%) Query: 1 MKRRDFLKSVSGLAAGALAPTAPAIWSPAKADARSETLLIVSEGGPNNLDIHGVGTNVPG 60 MKRRDFLKS + LAAGA+ P APAIWS AKADARSETLL+VSE GPNNLDIHGVGTNVPG Sbjct: 18 MKRRDFLKSATALAAGAMVP-APAIWSAAKADARSETLLVVSESGPNNLDIHGVGTNVPG 76 Query: 61 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFKGELAEDINIGDMSVTFKLRKNAKFHDGT 120 YEVSWNCYDRLI+HEMK GPGGVPYYD+DKFKGELA+D+ IGDMS TFKL+KNA F DGT Sbjct: 77 YEVSWNCYDRLITHEMKEGPGGVPYYDKDKFKGELADDMVIGDMSATFKLKKNATFQDGT 136 Query: 121 PFTAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDDTTVRVDFLKKDKLTIPDLA 180 P TAKDVKWSLDR+VSVGGFPTFQMSAGSLTKPEQFV+VDD TVRVDFLKKDKLTIPDLA Sbjct: 137 PVTAKDVKWSLDRSVSVGGFPTFQMSAGSLTKPEQFVVVDDHTVRVDFLKKDKLTIPDLA 196 Query: 181 VIVPCVVNSELVKKNASEKDPWGLEFTKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP 240 VIVPCVVNSELVKKNA+EKDPWGLE+TKQ TAGSGAY+V KWTAGTEV+MERND WV GP Sbjct: 197 VIVPCVVNSELVKKNATEKDPWGLEYTKQNTAGSGAYRVVKWTAGTEVIMERNDKWVGGP 256 Query: 241 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPFKDFQEMKANGKLNVVSLPFSNGIQY 300 LPKIKRVIWRMVPQAGNRRALLERGDADISYELP +DF EMK +GK+NVVSLP SNGIQY Sbjct: 257 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPNQDFAEMKRDGKVNVVSLPISNGIQY 316 Query: 301 IGMNVTKPPFDNPKVRQAMAYAMPYQKIMDAVLFGLANPMFGAAKDKPTEVAWPQPTKYY 360 +GMNVT+PPF+NPKVR+A+AYA+PYQKI+DAV+FGLANPMFGAA DK TEV WPQPTKY Sbjct: 317 LGMNVTQPPFNNPKVREAVAYAVPYQKIIDAVMFGLANPMFGAAADKATEVKWPQPTKYN 376 Query: 361 TDMEKAKALLAEAGYANGFETTISFDLNFAGVNEPLCVLVQESLAQLGIKTTINKVPGAN 420 TDM KAKAL+AEAGYANGF+TT+SFDL FAGVNEP+C+L+QESLAQ+GI+ TINK+PGAN Sbjct: 377 TDMAKAKALMAEAGYANGFDTTLSFDLGFAGVNEPMCILIQESLAQIGIRCTINKIPGAN 436 Query: 421 WRTELTKKEMPLFTNVFSGWLDYPEYFFYWCYHGNNSIFNTMSYKSSEMDKLIDGARVAA 480 WRTEL KK MPL+ N+FSGWLDYPEYFFYWCYH SIFNTM Y S EMDKLID +RVAA Sbjct: 437 WRTELNKKVMPLYVNIFSGWLDYPEYFFYWCYHSGKSIFNTMGYDSPEMDKLIDSSRVAA 496 Query: 481 ANGDTAAYDADVKGFVDLAFADIPRIPLYQPFVNVAMQKNVTGYQYWFHRRLDYRAMTKG 540 A GDTA YD+DVKGFVDLAF DIPR+PLYQP++NVAMQKNV+G+ YWFHRRLDYR M KG Sbjct: 497 ATGDTATYDSDVKGFVDLAFKDIPRVPLYQPYLNVAMQKNVSGFAYWFHRRLDYRTMVKG 556 >ref|YP_001990663.1| family 5 extracellular solute-binding protein [Rhodopseudomonas palustris TIE-1] gb|ACF00188.1| extracellular solute-binding protein family 5 [Rhodopseudomonas palustris TIE-1] Length = 539 Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/540 (83%), Positives = 496/540 (91%), Gaps = 1/540 (0%) Query: 1 MKRRDFLKSVSGLAAGALAPTAPAIWSPAKADARSETLLIVSEGGPNNLDIHGVGTNVPG 60 MKRRDFLKS + LAAGA+ P APAIWS AKADARSETLL+VSE GPNNLDIHGVGTNVPG Sbjct: 1 MKRRDFLKSATALAAGAMVP-APAIWSAAKADARSETLLVVSESGPNNLDIHGVGTNVPG 59 Query: 61 YEVSWNCYDRLISHEMKSGPGGVPYYDRDKFKGELAEDINIGDMSVTFKLRKNAKFHDGT 120 YEVSWNCYDRLI+HEMK GPGGVPYYD+DKFKGELA+D+ IGDMS TFKL+KNA F DGT Sbjct: 60 YEVSWNCYDRLITHEMKEGPGGVPYYDKDKFKGELADDMVIGDMSATFKLKKNATFQDGT 119 Query: 121 PFTAKDVKWSLDRAVSVGGFPTFQMSAGSLTKPEQFVIVDDTTVRVDFLKKDKLTIPDLA 180 P TAKDVKWSLDR+VSVGGFPTFQMSAGSLTKPEQFV+VDD TVRVDFLKKDKLTIPDLA Sbjct: 120 PVTAKDVKWSLDRSVSVGGFPTFQMSAGSLTKPEQFVVVDDHTVRVDFLKKDKLTIPDLA 179 Query: 181 VIVPCVVNSELVKKNASEKDPWGLEFTKQQTAGSGAYKVTKWTAGTEVVMERNDDWVCGP 240 VIVPCVVNSELVKKNA+EKDPWGLE+TKQ TAGSGAY+V KWTAGTEV+MERND WV GP Sbjct: 180 VIVPCVVNSELVKKNATEKDPWGLEYTKQNTAGSGAYRVVKWTAGTEVIMERNDKWVGGP 239 Query: 241 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPFKDFQEMKANGKLNVVSLPFSNGIQY 300 LPKIKRVIWRMVPQAGNRRALLERGDADISYELP +DF EMK +GK+NVVSLP SNGIQY Sbjct: 240 LPKIKRVIWRMVPQAGNRRALLERGDADISYELPNQDFAEMKRDGKVNVVSLPISNGIQY 299 Query: 301 IGMNVTKPPFDNPKVRQAMAYAMPYQKIMDAVLFGLANPMFGAAKDKPTEVAWPQPTKYY 360 +GMNVT+PPF+NPKVR+A+AYA+PYQKI+DAV+FGLANPMFGAA DK TEV WPQPTKY Sbjct: 300 LGMNVTQPPFNNPKVREAVAYAVPYQKIIDAVMFGLANPMFGAAADKATEVKWPQPTKYN 359 Query: 361 TDMEKAKALLAEAGYANGFETTISFDLNFAGVNEPLCVLVQESLAQLGIKTTINKVPGAN 420 TDM KAKAL+AEAGYANGF+TT+SFDL FAGVNEP+C+L+QESLAQ+GI+ TINK+PGAN Sbjct: 360 TDMAKAKALMAEAGYANGFDTTLSFDLGFAGVNEPMCILIQESLAQIGIRCTINKIPGAN 419 Query: 421 WRTELTKKEMPLFTNVFSGWLDYPEYFFYWCYHGNNSIFNTMSYKSSEMDKLIDGARVAA 480 WRTEL KK MPL+ N+FSGWLDYPEYFFYWCYH SIFNTM Y S EMD+LID +R+AA Sbjct: 420 WRTELNKKVMPLYVNIFSGWLDYPEYFFYWCYHSGKSIFNTMGYDSPEMDRLIDSSRIAA 479 Query: 481 ANGDTAAYDADVKGFVDLAFADIPRIPLYQPFVNVAMQKNVTGYQYWFHRRLDYRAMTKG 540 A G+TA YD+DVKGFVDLAF DIPR+PLYQP++NVAMQKNV+G+ YWFHRRLDYR M KG Sbjct: 480 ATGETATYDSDVKGFVDLAFKDIPRVPLYQPYLNVAMQKNVSGFAYWFHRRLDYRTMVKG 539