BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0002.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767675.1| phosphotransferase [Bradyrhizobium japonicum US... 410 e-113 ref|YP_001236887.1| hypothetical protein BBta_0715 [Bradyrhizobi... 318 6e-85 ref|YP_001208639.1| putative phosphotransferase [Bradyrhizobium ... 310 1e-82 ref|YP_001362490.1| aminoglycoside phosphotransferase [Kineococc... 140 3e-31 ref|ZP_07281554.1| predicted protein [Streptomyces sp. AA4] >gi|... 132 1e-28 >ref|NP_767675.1| phosphotransferase [Bradyrhizobium japonicum USDA 110] dbj|BAC46300.1| blr1035 [Bradyrhizobium japonicum USDA 110] Length = 326 Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/309 (66%), Positives = 236/309 (76%), Gaps = 2/309 (0%) Query: 7 TNYDSYRAWRGDASRWLPVARDIADGHGLSCVAPHVFSTGTNLVIALDDGLILKLFPPFL 66 T+ ++YRA R D SRWLP+A DIA HGL AP VF TGTNLV+ L + LILK+FPP L Sbjct: 20 TSLEAYRALRADQSRWLPIALDIARSHGLDVGAPQVFVTGTNLVVGLGERLILKIFPPLL 79 Query: 67 RPQFVSERGALAALRGRLGIPIPDLIAEGERDGWPYLVITHLAGTVGSEVWPSLPEAERE 126 QFVSERG+L L RL +PIP ++AEG RDGWPYLVIT LAGT+GSEVWPSLPE ++E Sbjct: 80 HAQFVSERGSLTQLAARLSLPIPQVVAEGMRDGWPYLVITRLAGTLGSEVWPSLPEQQKE 139 Query: 127 RVLAEIGAVIAEVQRVPPGSLLALEPRWEAFMRAQIAQCRARHERLGLPAKFLTSLDDLL 186 R+L +IG IA VQR P G L A+EPRW+ FMRAQ+ CRARH+RLGL KFL LDDLL Sbjct: 140 RLLRQIGETIAAVQRAPLGPLAAIEPRWDEFMRAQMQGCRARHQRLGLAPKFLGGLDDLL 199 Query: 187 RDATELIPMSAPPVILTGEYIPENFLLGRRADGWHVAGLFDFGDVRTGWGEYDLLGPSAF 246 RDA L+PM APPV+LTGEYIPENFLL W +AGLFDFGDVR GW +YDLLGP AF Sbjct: 200 RDAARLVPMDAPPVLLTGEYIPENFLLACHDGQWSLAGLFDFGDVRAGWRDYDLLGPGAF 259 Query: 247 MAAGHPRRVRSLFEGFGISRNDVTFTLKRRLMALMMLHSASDPLRHICIAGWPDRVDDFV 306 MAAG P RVRSL EGFG ++ D + LKRRLMALM+LH ASD HICI GW D+ D V Sbjct: 260 MAAGRPGRVRSLLEGFGYAKLD--YALKRRLMALMLLHHASDLNSHICIEGWQDKAKDLV 317 Query: 307 QLQELIWPD 315 +LQ+LIW + Sbjct: 318 ELQDLIWAE 326 >ref|YP_001236887.1| hypothetical protein BBta_0715 [Bradyrhizobium sp. BTAi1] gb|ABQ32981.1| hypothetical protein BBta_0715 [Bradyrhizobium sp. BTAi1] Length = 317 Score = 318 bits (816), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 168/314 (53%), Positives = 214/314 (68%), Gaps = 1/314 (0%) Query: 3 LPSLTNYDSYRAWRGDASRWLPVARDIADGHGLSCVAPHVFSTGTNLVIALDDGLILKLF 62 LP + + + R D + WLP A+ I G F GTNLV AL+D L+LK+F Sbjct: 4 LPPIADVVQLKRLRADEAHWLPAAQQIVRAEGYDGAQLVPFGAGTNLVAALNDQLVLKIF 63 Query: 63 PPFLRPQFVSERGALAALRGRLG-IPIPDLIAEGERDGWPYLVITHLAGTVGSEVWPSLP 121 P F R +F+SER L L GR+ + P+L+ GE +GW YL+++ L G SEVWP L Sbjct: 64 PSFHRAKFLSERATLRVLGGRVDDVATPELLHHGECEGWSYLIMSRLEGVAASEVWPLLA 123 Query: 122 EAERERVLAEIGAVIAEVQRVPPGSLLALEPRWEAFMRAQIAQCRARHERLGLPAKFLTS 181 EA++ R+L ++G +IA+VQ+V PG LL L PRW F++ Q+A CRARH+RLGLP L Sbjct: 124 EADKPRLLRQLGRLIADVQQVSPGELLTLGPRWSDFLQMQLAGCRARHQRLGLPPALLAV 183 Query: 182 LDDLLRDATELIPMSAPPVILTGEYIPENFLLGRRADGWHVAGLFDFGDVRTGWGEYDLL 241 LDDLL +A + +P VILTGEYIPENF+L DGW V+GLFDFGDV TG+GEYDLL Sbjct: 184 LDDLLNEAVDELPRDPQSVILTGEYIPENFMLSPVGDGWRVSGLFDFGDVMTGFGEYDLL 243 Query: 242 GPSAFMAAGHPRRVRSLFEGFGISRNDVTFTLKRRLMALMMLHSASDPLRHICIAGWPDR 301 GPSAF+AAGH R+R+LFEG+G++ VT+ LKRRL+ LM+LH ASDPLRHI I WP R Sbjct: 244 GPSAFLAAGHAARMRALFEGYGLAPGQVTWQLKRRLLFLMLLHQASDPLRHIAIPDWPLR 303 Query: 302 VDDFVQLQELIWPD 315 F LQ LIWP+ Sbjct: 304 AGTFDALQALIWPE 317 >ref|YP_001208639.1| putative phosphotransferase [Bradyrhizobium sp. ORS 278] emb|CAL80424.1| conserved hypothetical protein; putative phosphotransferase [Bradyrhizobium sp. ORS 278] Length = 276 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 159/274 (58%), Positives = 202/274 (73%), Gaps = 1/274 (0%) Query: 43 FSTGTNLVIALDDGLILKLFPPFLRPQFVSERGALAALRGRLG-IPIPDLIAEGERDGWP 101 F GTNLV ++ DG ILK+FP LR QF+SER L + RL + P+L+ EGERDGW Sbjct: 3 FGAGTNLVASIGDGAILKIFPSLLRDQFLSERTTLRLMFRRLADVTTPELLYEGERDGWS 62 Query: 102 YLVITHLAGTVGSEVWPSLPEAERERVLAEIGAVIAEVQRVPPGSLLALEPRWEAFMRAQ 161 YL++T L G SEVWP L E +++ +L ++G +IA+VQRVP G LLAL P W F++AQ Sbjct: 63 YLIMTRLDGDPASEVWPQLDEPDKQHMLRQLGRLIADVQRVPAGELLALGPSWSDFLQAQ 122 Query: 162 IAQCRARHERLGLPAKFLTSLDDLLRDATELIPMSAPPVILTGEYIPENFLLGRRADGWH 221 A CR RH+RLGLP+ L LDDLL++A ++P PVILTGEYIPENFL+ GW Sbjct: 123 FAACRDRHQRLGLPSPLLDELDDLLQEAAAILPRDPSPVILTGEYIPENFLVAPDGRGWR 182 Query: 222 VAGLFDFGDVRTGWGEYDLLGPSAFMAAGHPRRVRSLFEGFGISRNDVTFTLKRRLMALM 281 ++GLFDFGDV G+GEYDLLGPSAFMAAGH RVR+LFEG+G++ ++T+ KRRL+ALM Sbjct: 183 LSGLFDFGDVMAGFGEYDLLGPSAFMAAGHRGRVRALFEGYGLTPGEITWQFKRRLLALM 242 Query: 282 MLHSASDPLRHICIAGWPDRVDDFVQLQELIWPD 315 +LH ASDP+RHICI WP +V F +LQ L+WPD Sbjct: 243 LLHRASDPVRHICIPDWPSKVRSFDELQALVWPD 276 >ref|YP_001362490.1| aminoglycoside phosphotransferase [Kineococcus radiotolerans SRS30216] gb|ABS04226.1| aminoglycoside phosphotransferase [Kineococcus radiotolerans SRS30216] Length = 320 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 140/288 (48%), Gaps = 6/288 (2%) Query: 3 LPSLTNYDSYRAWRGDASRWLPVARDIADGHGLSCVAPHVFSTGTNLVIALDDGLILKLF 62 LP+LT D+ A D S P +A GL G+ L + D L+LKLF Sbjct: 7 LPALTTEDALHAVVRDESALRPGVDALARSLGLPTARLRRLPNGS-LPVYADGHLVLKLF 65 Query: 63 PPFLRPQFVSERGALAALRGRLGIPIPDLIAEGERDGWPYLVITHLAGTVGSEVWPSLPE 122 PP E AL A+ GRL +P P + A+G DGW Y+++ L G S VW L Sbjct: 66 PPVHAAAASVEAAALRAVTGRLPVPTPAVHADGIHDGWRYVLMDRLPGHDLSSVWKDLTR 125 Query: 123 AERERVLAEIGAVIAEVQRVPPGSLLALEPR-WEAFMRAQIAQCRARHERLGLPAKFLTS 181 +R R+ A+ GA+ + RV P ++ P+ W F+ Q R RH+R GLP + Sbjct: 126 GDRRRLAAQAGALSRALHRVSPPTVEDWWPQDWAGFVDGQRVTARQRHQRWGLPQPWSEQ 185 Query: 182 LDDLLRDATELIPMSAPPVILTGEYIPENFLLGRRADG-WHVAGLFDFGDVRTGWGEYDL 240 +DD L D T L+P P V+L E +P N L ADG W ++G+ DF G EY+L Sbjct: 186 IDDFL-DRTPLLP--GPEVLLHTEVMPANLLAAPDADGRWSLSGVCDFEPAMRGHHEYEL 242 Query: 241 LGPSAFMAAGHPRRVRSLFEGFGISRNDVTFTLKRRLMALMMLHSASD 288 + + FMA G P +R +G + L RRL+ +LH D Sbjct: 243 VAIAVFMAEGDPTVLREALTAYGYDATRLDEDLSRRLLTWTLLHRFGD 290 >ref|ZP_07281554.1| predicted protein [Streptomyces sp. AA4] gb|EFL09923.1| predicted protein [Streptomyces sp. AA4] Length = 308 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 131/267 (49%), Gaps = 5/267 (1%) Query: 23 LPVARDIADGHGLSCVAPHVFSTGTNLVIALDDGLILKLFPPFLRPQFVSERGALAALRG 82 LP ARD+ G P F+ G+ V A+ D L+LKL+PP R + +ER L L G Sbjct: 20 LPAARDLLRTLG-EPGEPVPFADGSLPVYAVGDQLVLKLYPPVHRDELTTERTMLEVLSG 78 Query: 83 RLGIPIPDLIAEGERDGWPYLVITHLAGTVGSEVWPSLPEAERERVLAEIGAVIAEVQRV 142 +L +P P ++ G RDGW Y+V+ L G +VWP L A++ + +IG ++ + V Sbjct: 79 KLPVPTPGVVHAGTRDGWGYVVMERLRGRPLKQVWPGLSTADKLALAPKIGEALSALHSV 138 Query: 143 PPGSLLALEPR-WEAFMRAQIAQCRARHERLGLPAKFLTSLDDLLRDATELIPMSAPPVI 201 L L P W AF+ AQ + H L +L L + + P +AP Sbjct: 139 RDPRLSVLAPADWTAFLAAQREKLVDHHRATALDEHWLAQLPEFVGAVDLGTPETAP--- 195 Query: 202 LTGEYIPENFLLGRRADGWHVAGLFDFGDVRTGWGEYDLLGPSAFMAAGHPRRVRSLFEG 261 L E + ++ ++ R +GW ++GLFDF G EY+ F++ G P +RSL Sbjct: 196 LHTEVMRDHLMVTREGEGWRLSGLFDFEPAMRGAPEYEFAAAGLFVSGGDPAFLRSLLLA 255 Query: 262 FGISRNDVTFTLKRRLMALMMLHSASD 288 +G D+ RR +A +LH S+ Sbjct: 256 YGYRPADLGPDFSRRCLAYALLHVYSN 282