BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0001.p (151 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236886.1| ABC transporter substrate-binding protein [B... 270 5e-71 ref|YP_578874.1| extracellular solute-binding protein [Nitrobact... 267 4e-70 ref|YP_001208640.1| sugar ABC transporter substrate-binding prot... 267 5e-70 ref|NP_767673.1| glycerol-3-phosphate binding protein [Bradyrhiz... 259 8e-68 ref|YP_529995.1| extracellular solute-binding protein [Rhodopseu... 258 2e-67 >ref|YP_001236886.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ32980.1| carbohydrate ABC transporter substrate-binding protein, CUT1 family [Bradyrhizobium sp. BTAi1] Length = 429 Score = 270 bits (690), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 125/151 (82%), Positives = 141/151 (93%) Query: 1 MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60 MMPY PDV GAPQNSIIGGATLWVLRDRP AEY GVA+FFAYLSRP++QAAWHQNTGYLP Sbjct: 279 MMPYWPDVAGAPQNSIIGGATLWVLRDRPAAEYKGVARFFAYLSRPDIQAAWHQNTGYLP 338 Query: 61 ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120 IT+AAFDLTRAQGFYDRNPG +ISIE+VTL PPT++S+G+RLGSFVLIRD IE+E+EQ F Sbjct: 339 ITQAAFDLTRAQGFYDRNPGTAISIEQVTLHPPTENSRGLRLGSFVLIRDAIEDEMEQAF 398 Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERANPDR 151 SG++SA AA+D AVERGNRLLRQFERA+PDR Sbjct: 399 SGRKSAHAALDAAVERGNRLLRQFERASPDR 429 >ref|YP_578874.1| extracellular solute-binding protein [Nitrobacter hamburgensis X14] gb|ABE64414.1| carbohydrate ABC transporter substrate-binding protein, CUT1 family [Nitrobacter hamburgensis X14] Length = 460 Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 123/149 (82%), Positives = 142/149 (95%) Query: 1 MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60 M+P+ PDV+GAPQN+IIGGATLWVLRDRPR EY GVAKFFAYLS+PEVQAAWHQ+TGYLP Sbjct: 312 MLPFWPDVEGAPQNTIIGGATLWVLRDRPREEYKGVAKFFAYLSKPEVQAAWHQHTGYLP 371 Query: 61 ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120 ITRAAFDLTRAQGFYDRNPG++I+IE++TLKPPT++S+G+RLGSFVLIR VIE+ELEQ F Sbjct: 372 ITRAAFDLTRAQGFYDRNPGSAIAIEQMTLKPPTENSRGLRLGSFVLIRAVIEDELEQAF 431 Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERANP 149 SGK+SAQAAMD+AV RGN+LLRQFER NP Sbjct: 432 SGKKSAQAAMDSAVARGNKLLRQFERTNP 460 >ref|YP_001208640.1| sugar ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL80425.1| Putative ABC transporter, substrate-binding protein; putative sugar transporter [Bradyrhizobium sp. ORS 278] Length = 448 Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 140/151 (92%) Query: 1 MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60 MMP+ PDV GAPQNSIIGGATLWVLRDRP AEY GVAKFFAYLSRP+VQAAWHQNTGYLP Sbjct: 298 MMPFWPDVAGAPQNSIIGGATLWVLRDRPAAEYKGVAKFFAYLSRPDVQAAWHQNTGYLP 357 Query: 61 ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120 IT+AAFDLTRAQGFYDRNPG +ISIE+VTL PPT++S+G+RLGSFVLIRD +E+E+EQ F Sbjct: 358 ITQAAFDLTRAQGFYDRNPGTAISIEQVTLHPPTENSRGLRLGSFVLIRDAVEDEMEQAF 417 Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERANPDR 151 SG++ A AA+D AVERGNRLLRQFERA+PDR Sbjct: 418 SGRKPAHAALDAAVERGNRLLRQFERASPDR 448 >ref|NP_767673.1| glycerol-3-phosphate binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46298.1| blr1033 [Bradyrhizobium japonicum USDA 110] Length = 446 Score = 259 bits (662), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 120/151 (79%), Positives = 140/151 (92%) Query: 1 MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60 MMPY P+V+ APQNSIIGGATLWVLRDRPRAEY GVA+FFAYLS+P VQAAWHQNTGYLP Sbjct: 296 MMPYWPEVKDAPQNSIIGGATLWVLRDRPRAEYKGVARFFAYLSQPGVQAAWHQNTGYLP 355 Query: 61 ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120 ITRAA++LTRAQGFY+RNPG++IS EE+TL PPT +SKGIRLGSFVLIR IE+ELEQ F Sbjct: 356 ITRAAYELTRAQGFYERNPGSAISFEEITLHPPTSNSKGIRLGSFVLIRGAIEDELEQAF 415 Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERANPDR 151 +G++SAQ A+D+AVERGN+LLRQFERA+P+R Sbjct: 416 AGQKSAQGALDSAVERGNKLLRQFERASPER 446 >ref|YP_529995.1| extracellular solute-binding protein [Rhodopseudomonas palustris BisB18] gb|ABD85676.1| extracellular solute-binding protein, family 1 [Rhodopseudomonas palustris BisB18] Length = 434 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 119/149 (79%), Positives = 138/149 (92%) Query: 1 MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60 M+PY PDV GAPQN++IGGATLWVLR RP EY GVAKFF YLS+PE+QAAWHQNTGYLP Sbjct: 286 MLPYWPDVAGAPQNTMIGGATLWVLRGRPSEEYRGVAKFFGYLSQPEIQAAWHQNTGYLP 345 Query: 61 ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120 ITRAA++LTRAQGFYDRNPG +ISIE++TLK PT++S+G+RLGSFVLIRDVIE+ELEQ F Sbjct: 346 ITRAAYELTRAQGFYDRNPGTAISIEQITLKMPTENSRGLRLGSFVLIRDVIEDELEQAF 405 Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERANP 149 SGK+SA+AA+ +AVERGNRLLRQFERANP Sbjct: 406 SGKKSAKAALGSAVERGNRLLRQFERANP 434