BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0047.p (1082 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004304070.1| transcriptional regulator, AraC family with ... 945 0.0 ref|YP_003693647.1| AraC family transcriptional regulator with a... 922 0.0 ref|YP_001354518.1| transcriptional regulator [Janthinobacterium... 731 0.0 ref|YP_001101322.1| hypothetical protein HEAR3092 [Herminiimonas... 708 0.0 ref|YP_001022787.1| AraC family transcriptional regulator [Methy... 704 0.0 >ref|YP_004304070.1| transcriptional regulator, AraC family with acetamidase/formamidase activity [Polymorphum gilvum SL003B-26A1] gb|ADZ70768.1| Transcriptional regulator, AraC family with acetamidase/formamidase activity [Polymorphum gilvum SL003B-26A1] Length = 773 Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/794 (60%), Positives = 571/794 (71%), Gaps = 23/794 (2%) Query: 1 MVATTYRVSVDAIPRQNRREVWREALAGLQLDCELPEAGQFQFGELTAKRSTSGGQLALL 60 M AT + VD P +R W+EALA L L F+ G+L K S++G +L L Sbjct: 1 MSATEDTIRVDTYPAGDRERAWQEALARLSLTSRPSAVSPFRSGDLAVKPSSTGARLVRL 60 Query: 61 RSTEQQIVCSGHAASPGMPARVAIIFHGYGRGSITSGQRSCEFADNDVSVCDLQSPWRMT 120 ++ Q+IV G A I+FH GRG I + +R EFAD D+SVCD+ + W M Sbjct: 61 GASAQKIV----GLRAGADAPTMIVFHAAGRGQIFADRRELEFADGDLSVCDMAADWSMD 116 Query: 121 LREDFEILLLELPRERLLGRLGHNRLRLPAVLGATIAAASVRPVMRTLGGNFAILDKADL 180 LR DF++L LELPR RLL RLGH R+RLP VLGA+++AA+VRPVM L G F +L +L Sbjct: 117 LRGDFQLLALELPRARLLARLGHGRVRLPVVLGASVSAAAVRPVMNALAGRFDLLGDDEL 176 Query: 181 ATAEVAVTELVAGALLGETRLDAEAMTQVQAGHLRRVDAAIEAQLGNAGLTIADIARQEG 240 E+AVTELV AL E++ + TQVQA H RRV AIEA+L L++ADIA QE Sbjct: 177 GGIEIAVTELVGAALAIESKSAGDETTQVQAAHFRRVCTAIEARLSAPDLSLADIAAQEN 236 Query: 241 LSQRYLQRLFERQNTTFSAYVRERRLERCCNDLIDPNYADQRIAEISYRWGFTDQAHFSR 300 LSQRY QRLFER+ TFS Y+R+RRLERC DL+DP Y D IAEI RWGF DQAHFSR Sbjct: 237 LSQRYAQRLFEREGVTFSDYLRQRRLERCRADLVDPKYRDHGIAEICCRWGFRDQAHFSR 296 Query: 301 MFSATYGTSPRDFRKAVPRDVEGERTRGRPRLARGTATVLRLAPNLASSLASSPVARETV 360 FS YG SPR R+ RGRP+ AR A+ A A A + A Sbjct: 297 TFSLAYGMSPRALRRTAAEAAPAYPYRGRPQ-ARVAASAPTRAAAGAGVGAPAGAAPAPP 355 Query: 361 APLEPVVPVEPPAAVPEGRGASHHHLKVSRETAHWGYLSRAIPPVMSVQSGAVVTIETLT 420 A + HHL V R+T HWGYLSR IPP + V+ G++VTIETLT Sbjct: 356 A-----------------QDGIRHHLAVGRDTVHWGYLSRTIPPALFVEPGSLVTIETLT 398 Query: 421 QHAFDDYERMIKGDPGAESVFRWTAEGKSVERRGAGPMDGSIFGRGAGEGFGVHICTGPI 480 QHAFDD++RMIKGD GAE VF WTA+GKSV+RRGAGPM+ SIFGRGAGEGFGVHICTGP+ Sbjct: 399 QHAFDDHDRMIKGDAGAEDVFHWTAQGKSVDRRGAGPMNASIFGRGAGEGFGVHICTGPV 458 Query: 481 YVCGAEPGDVLEVQILDIWPRPSANPAYAGKSFGSNAAAWWGFQYNDLIDPPAKRETITI 540 YV GAEPGDVLE++ILDI PRPS NP +AG+ FGSNAAAWWG+QY+DLI+PP RE ITI Sbjct: 459 YVRGAEPGDVLEIEILDIRPRPSGNPDHAGRCFGSNAAAWWGYQYHDLIEPPRPREVITI 518 Query: 541 FETDAEAEWARAVYSYRWTPQTDPFGVRHETMDYPGVPVDHATVEKRSGVLAGVRIPARL 600 +E DA+ ARA+YSYRWTPQTDPFGV HE MDYPGVPVDHATVE R GVL V +P R Sbjct: 519 YELDAKQAVARALYSYRWTPQTDPFGVCHEIMDYPGVPVDHATVEHRHGVLRDVVVPIRP 578 Query: 601 HFGFMAVAPRESDIIDSIPPGYFGGNVDNWRATKGTTLYLPVAVPGALFSIGDPHFAQGD 660 HFGF+ VAPRE+D++DSIPPGYFGGNVDNWRA KG +YLPVAVPGAL S+GDPH AQGD Sbjct: 579 HFGFIGVAPREADMVDSIPPGYFGGNVDNWRAGKGARIYLPVAVPGALLSVGDPHLAQGD 638 Query: 661 GEVNGTALELSLTGQFRFILHKSGK-ATKPHVEGLAHPLLETPEEWILHGFSYGNYLREL 719 GE+NGTALE SLTG FR LHK A +P ++GL +PL+ETP+ W+LHGFSY NYL+EL Sbjct: 639 GEINGTALECSLTGDFRLALHKRDSLAERPFLDGLTYPLVETPQAWVLHGFSYQNYLKEL 698 Query: 720 GRNAQSEIYQRSSVDLALRNAFRATRKFLMECYRLSEDEALALISLGVDFGVTQVADGNW 779 GRNAQSEIY++SSVDLALR+AFR TRKFLM+ YRL EDEA++L+S+ VDF +TQVADGNW Sbjct: 699 GRNAQSEIYRKSSVDLALRSAFRTTRKFLMDRYRLDEDEAVSLMSVAVDFSITQVADGNW 758 Query: 780 GVHAIVRKSMLXGQ 793 GVHA++RK + G+ Sbjct: 759 GVHAVIRKEIFAGR 772 >ref|YP_003693647.1| AraC family transcriptional regulator with acetamidase/formamidase activity [Starkeya novella DSM 506] gb|ADH89028.1| transcriptional regulator, AraC family with acetamidase/formamidase activity [Starkeya novella DSM 506] Length = 782 Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/790 (60%), Positives = 579/790 (73%), Gaps = 31/790 (3%) Query: 8 VSVDAIPRQNRREVWREALAGLQLDCELPEAGQFQFGELTAKRSTSGGQLALLRSTEQQI 67 +S++A P + WRE LA L L +L AG F FGE++ KRS + ALLRS+ Q + Sbjct: 10 ISINAFPASKQEAAWRETLASLGLAAQLASAGTFHFGEVSIKRSPTQATFALLRSSAQNL 69 Query: 68 VCSGHAASPGMPARVAIIFHGYGRGSIT-SGQRSCEFADNDVSVCDLQSPWRMTLREDFE 126 AA P +V + F YGRG +T SG+R+ EFAD DV VCD +P+ + R DFE Sbjct: 70 -----AALPKSEPQVLVGFVTYGRGHLTDSGRRAAEFADGDVWVCDPATPFSVQFRNDFE 124 Query: 127 ILLLELPRERLLGRLGHNRLRLPAVLGATIAAASVRPVMRTLGGNFAILDKADLATAEVA 186 +LLL LPRERL+GRLG V+G T++AA+ RP+MR L +FA ++ D+ AE A Sbjct: 125 LLLLRLPRERLVGRLGRAATVPTLVVGETVSAAAARPLMRALAAHFAEMEDGDVMAAEPA 184 Query: 187 VTELVAGALLGETRLDAEAMTQVQAGHLRRVDAAIEAQLGNAGLTIADIARQEGLSQRYL 246 +TELV ALL E R + + TQVQA H RV A IEA+L L++ D+A EGLS RY+ Sbjct: 185 ITELVLSALLAEARPEEDNATQVQAAHFARVCAQIEARLREPELSVGDVAGAEGLSARYI 244 Query: 247 QRLFERQNTTFSAYVRERRLERCCNDLIDPNYADQRIAEISYRWGFTDQAHFSRMFSATY 306 QRLFE Q+ +FS YVR RRLERC DL++P +AD+ IAEI +RWGF DQAHFSR+FSA Y Sbjct: 245 QRLFEGQDRSFSDYVRHRRLERCRLDLVNPQHADRSIAEIGFRWGFADQAHFSRVFSAAY 304 Query: 307 GTSPRDFRKAVPRDVEGERTRGRPRLARGTATVLRLAPNLASSLAS----SPVARETVAP 362 G SPRD+RK+ VE TRGRP + AP L + S +PV RE P Sbjct: 305 GISPRDYRKSSGATVETRWTRGRPMHSGSRPVRPGPAPALVPASESGGLPAPVPREVGEP 364 Query: 363 LEPVVPVEPPAAVPEGRGASHHHLKVSRETAHWGYLSRAIPPVMSVQSGAVVTIETLTQH 422 HHHL VSR+T HWGYLSR IPPV+ V+SGA VT+ETLTQH Sbjct: 365 -------------------GHHHLPVSRDTVHWGYLSRTIPPVLRVRSGARVTVETLTQH 405 Query: 423 AFDDYERMIKGDPGAESVFRWTAEGKSVERRGAGPMDGSIFGRGAGEGFGVHICTGPIYV 482 A+DD+ERMI GDPGAESVFRWT + K+V+RRGAGP++ SIFGRGAGEGFGVHICTGPI+V Sbjct: 406 AYDDHERMIAGDPGAESVFRWTGDYKAVDRRGAGPVNASIFGRGAGEGFGVHICTGPIFV 465 Query: 483 CGAEPGDVLEVQILDIWPRPSANPAYAGKSFGSNAAAWWGFQYNDLIDPPAKRETITIFE 542 GAEPGDVLEV+IL + PRPSANPA+AG +FGSNAAA WGF ++D++D P KRE IT++ Sbjct: 466 HGAEPGDVLEVEILALKPRPSANPAHAGSAFGSNAAAAWGFHHDDILDEPHKREVITVYR 525 Query: 543 TDAEAE--WARAVYSYRWTPQTDPFGVRHETMDYPGVPVDHATVEKRSGVLAGVRIPARL 600 TDA E +A AVYS+RW PQTDPFGV HET+DYPGVPVDHA +EKR VLAG RIP R Sbjct: 526 TDAAGESGYAEAVYSFRWAPQTDPFGVVHETIDYPGVPVDHARIEKREAVLAGARIPVRP 585 Query: 601 HFGFMAVAPRESDIIDSIPPGYFGGNVDNWRATKGTTLYLPVAVPGALFSIGDPHFAQGD 660 HFGF+AVAPRE+DI+DS+PPGYFGGN+DNWRA KG ++YLPVAVPGAL S+GDPH AQGD Sbjct: 586 HFGFIAVAPRETDIVDSVPPGYFGGNIDNWRAGKGASVYLPVAVPGALLSVGDPHLAQGD 645 Query: 661 GEVNGTALELSLTGQFRFILHKSGKATKPHVEGLAHPLLETPEEWILHGFSYGNYLRELG 720 GE++GTALE SLTG+ R +LHK G+ K + GL PL+ETP+ W+LHGFSY NYLRELG Sbjct: 646 GEISGTALECSLTGEIRLVLHKRGETDKSFLNGLGAPLIETPDAWLLHGFSYTNYLRELG 705 Query: 721 RNAQSEIYQRSSVDLALRNAFRATRKFLMECYRLSEDEALALISLGVDFGVTQVADGNWG 780 RNAQSE+++RSS+ ALR+AFRATRKFLME Y L EDEA++LIS+ VDFGVTQVADGNWG Sbjct: 706 RNAQSEVFKRSSLSKALRSAFRATRKFLMERYGLDEDEAISLISVAVDFGVTQVADGNWG 765 Query: 781 VHAIVRKSML 790 VHA + K++ Sbjct: 766 VHARIDKAIF 775 >ref|YP_001354518.1| transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89948.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 841 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/831 (46%), Positives = 521/831 (62%), Gaps = 38/831 (4%) Query: 1 MVATTYRVSVDAIPRQNRREVWREALAGLQLDCELPEAGQFQF-GELTAKRSTSGGQLAL 59 M+ R S DA P + R W + LA + L C+LP + + G + S+ A Sbjct: 16 MLDNLNRFSTDAFPGELRAGAWLQTLARIGLTCDLPPSERSPLHGCASVSISSHASVFAK 75 Query: 60 LRSTEQQIVCSGHAASPGMPARVAIIFHGYGRGSITSGQRSCEFADNDVSVCDLQSPWRM 119 L + QI+ S A V I+ G+G ++ G S D+ + + Q WR+ Sbjct: 76 LHGS-PQILHSPQDAVGKRNDVVLILALLEGQGQLSVGPESARMNAGDIFLVNPQQDWRL 134 Query: 120 TLREDFEILLLELPRERLLGRLGHNRLR-LPAVLGATIAAASVRPVMRTLGGNFAILDKA 178 L+ F +L+EL L RL L V+ A + ++G +F L Sbjct: 135 ELQTAFTAILIELKEAGFLARLMRTGASDLNRVVTNHGAGGISADFLYSIGEHFDGLSPE 194 Query: 179 DLATAEVAVTELVAGALLGE------TRLDAEAMTQVQAGHLRRVDAAIEAQLGNAGLTI 232 DL E ++T L+ + + DAE T VQ GHLRRV +IE +L + ++I Sbjct: 195 DLGQMEASLTSLLIAGMARNGDAEEASDPDAEHSTSVQLGHLRRVCRSIENRLTDPEVSI 254 Query: 233 ADIARQEGLSQRYLQRLFERQNTTFSAYVRERRLERCCNDLIDPNYADQRIAEISYRWGF 292 ++IAR E LS RY+Q+LF +TTF YV++RRL+RC NDL + I E+ +RWGF Sbjct: 255 SEIARIENLSARYIQKLFAGGDTTFGEYVKKRRLDRCRNDLANSALKHLTICELCFRWGF 314 Query: 293 TDQAHFSRMFSATYGTSPRDFRKAVPRDVEGERTRGRP--------------RLARGTAT 338 D A+FSR F+ +G SP+ +R + + V RGRP R A G + Sbjct: 315 NDAANFSRAFNLEFGISPKAYRASAGKPVALHLQRGRPAINAAQTSEKRRNSRKATGAVS 374 Query: 339 VLRLAP------NLASSLASSPVARETVA---PLEPVVPVEPPAAVPEGRGASHHHLKVS 389 L + + +S+ + E A P + ++ + HH++ VS Sbjct: 375 ALHIPDEQDGLRHQFTSILNEIAEYEVTALPLPEHGHISANDEVSLKRSVHSKHHYIPVS 434 Query: 390 RETAHWGYLSRAIPPVMSVQSGAVVTIETLTQHAFDDYERMIKGDPGAESVFRWTAEGKS 449 +T HWGY + I PV++VQSG VTIETLTQHA+DDYERMIKGDPGAESVF W A+GKS Sbjct: 435 DKTVHWGYFCKTIKPVVTVQSGDCVTIETLTQHAYDDYERMIKGDPGAESVFHWDAKGKS 494 Query: 450 VERRGAGPMDGSIFGRGAGEGFGVHICTGPIYVCGAEPGDVLEVQILDIWPRPSANPAYA 509 V+RRG+GP+D SI+GRGAGEGFGVHICTGP+YV AEPGDVLE++ILDI RP+A Y Sbjct: 495 VDRRGSGPIDSSIYGRGAGEGFGVHICTGPVYVQDAEPGDVLEIRILDIQTRPAAAEEYV 554 Query: 510 GKSFGSNAAAWWGFQYNDLIDPPAKRETITIFETDAEAE--WARAVYSYRWTPQTDPFGV 567 GKSFGSNAA+WWGF Y+DL+ P RE +TI+E + A A+AVY++RWTPQTDPFGV Sbjct: 555 GKSFGSNAASWWGFHYHDLLTEPKPREVVTIYEIEHAAHDCCAKAVYNFRWTPQTDPFGV 614 Query: 568 RHETMDYPGVPVDHATVEKRSGVLAGVRIPARLHFGFMAVAPRESDIIDSIPPGYFGGNV 627 RH+T+DYPG+PVDH+++ K GVL RIP R HFG MAVAP D +DS+PPG FGGN+ Sbjct: 615 RHDTIDYPGIPVDHSSIVKNYGVLKNARIPIRPHFGVMAVAPLLDDEVDSVPPGSFGGNL 674 Query: 628 DNWRATKGTTLYLPVAVPGALFSIGDPHFAQGDGEVNGTALELSLTGQFRFILHKSGKAT 687 DNWRA KG+TL+LPVAVPGALFS+GDPH +QGD E+ GTA+E SLTG+F+ +LHK Sbjct: 675 DNWRAAKGSTLFLPVAVPGALFSVGDPHASQGDSELCGTAIECSLTGEFQLVLHKKKDIA 734 Query: 688 KPHVEGLAHPLLETPEEWILHGFSYGNYLRELGRNAQSEIYQRSSVDLALRNAFRATRKF 747 ++ L HP LE+ EW++ G SY N+L ELG NAQ++IY+++S+D+A+R+AFR TR++ Sbjct: 735 GSFLDELDHPFLESETEWVIQGLSYANHLVELGANAQADIYKKASLDMAMRDAFRKTRRY 794 Query: 748 LMECYRLSEDEALALISLGVDFGVTQVADGNWGVHAIVRKSMLXGQGCRRQ 798 LM + L+EDEA++LIS+ VDFG+TQV +GNWGVHAI++K++L CR + Sbjct: 795 LMTAHGLNEDEAISLISVAVDFGITQVVNGNWGVHAIIKKTIL----CRDE 841 >ref|YP_001101322.1| hypothetical protein HEAR3092 [Herminiimonas arsenicoxydans] emb|CAL63201.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 807 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/810 (44%), Positives = 501/810 (61%), Gaps = 27/810 (3%) Query: 1 MVATTYRVSVDAIPRQNRREVWREALAGLQLDCELPEAGQFQF-GELTAKRSTSGGQLAL 59 M ++ S DA P + R W+ ALA L L E+ + G +T S G + Sbjct: 1 MHDDSHTFSTDAFPVELREAAWQNALASLALKSEIASKNKASLIGYVTFGVSQPGSVFST 60 Query: 60 LRSTEQQIVCSGHAASPGMPAR-----VAIIFHGYGRGSITSGQRSCEFADNDVSVCDLQ 114 L ++ Q A P M R V ++F G G+ I G + + D+ + D Sbjct: 61 LNASPQAF----SARDPAMLTRTNSVIVFVLFEGVGQ--IDVGAETAAVSAGDIYLLDSS 114 Query: 115 SPWRMTLREDFEILLLELPRERLLGRLGHN-RLRLPAVLGATIAAASVRPVMRTLGGNFA 173 W++ L F ++ L + + RL H + + + A+ + + A Sbjct: 115 RQWKLALTSAFRASVIRLEKANFISRLMHTGKTDICKISSASGVGNIALEFVNAITCQLA 174 Query: 174 ILDKADLATAEVAVTELVAGALLGETRLDAEAMTQVQAGHLRRVDAAIEAQLGNAGLTIA 233 L DL E A++ ++ +L + D T +Q HLRR+ IEA+L + L+ Sbjct: 175 SLGSGDLEQMEDALSTMLVASLAHKEEEDVSHSTSMQLSHLRRICRTIEARLTDPELSAI 234 Query: 234 DIARQEGLSQRYLQRLFERQNTTFSAYVRERRLERCCNDLIDPNYADQRIAEISYRWGFT 293 DIAR E LS RYLQ+LF TTF YV++RRL+RC DL + + I+E+ +RWGF Sbjct: 235 DIARSEQLSARYLQKLFASAGTTFGEYVKKRRLDRCRIDLSNLSLKHLTISELCFRWGFN 294 Query: 294 DQAHFSRMFSATYGTSPRDFRKAVPRDVEGERTRGRP--RLARGTATVLRLAPNLASSLA 351 D A+FSR F +G SP+ +R + RGRP T VL L S Sbjct: 295 DAANFSRAFHLEFGISPKGYRSQPKSVTKRYELRGRPGPSATEHTKNVLLQNDELPWSAR 354 Query: 352 SSPVARETVAPLEPVVPVEPPA---------AVPEGRGASHHHLKVSRETAHWGYLSRAI 402 + V E A LE + + P A E +H+++ + +T HWGY S I Sbjct: 355 FAEVLVE-AALLESAIALMPNQSSDSHKTEDADDEEYVGAHYYIPANSKTVHWGYFSSLI 413 Query: 403 PPVMSVQSGAVVTIETLTQHAFDDYERMIKGDPGAESVFRWTAEGKSVERRGAGPMDGSI 462 P++++ SG VTIET+TQHA+DDYERMI+GD GAES+F W + K+++RRGAGP+D SI Sbjct: 414 KPILAINSGDYVTIETITQHAYDDYERMIQGDAGAESIFFWDKDKKAIDRRGAGPIDASI 473 Query: 463 FGRGAGEGFGVHICTGPIYVCGAEPGDVLEVQILDIWPRPSANPAYAGKSFGSNAAAWWG 522 FGRGAGEGFGVHICTGP+YV AEPGDVLE++ILD+ PRP+ANP +AG+SFGSN A+WWG Sbjct: 474 FGRGAGEGFGVHICTGPVYVNNAEPGDVLEIRILDVMPRPAANPKFAGQSFGSNVASWWG 533 Query: 523 FQYNDLIDPPAKRETITIFET-DAE-AEWARAVYSYRWTPQTDPFGVRHETMDYPGVPVD 580 F Y+DL+ P RE +TI+E DA+ A+AVY+YRWTPQTDPFGV HET+DYPGVPVD Sbjct: 534 FHYHDLLTEPKPREVVTIYEILDADHGSCAKAVYNYRWTPQTDPFGVVHETIDYPGVPVD 593 Query: 581 HATVEKRSGVLAGVRIPARLHFGFMAVAPRESDIIDSIPPGYFGGNVDNWRATKGTTLYL 640 H ++ K VL VRIP R HFG +AVAP D IDS+PP YFGGN+DNWRATKG LYL Sbjct: 594 HDSIVKNFEVLKNVRIPVRPHFGVLAVAPAHEDPIDSVPPSYFGGNLDNWRATKGAKLYL 653 Query: 641 PVAVPGALFSIGDPHFAQGDGEVNGTALELSLTGQFRFILHKSGKATKPHVEGLAHPLLE 700 PVAV GALFS+GD H +QGD E+ GTA+E S++G+F+ +LHK L +P LE Sbjct: 654 PVAVDGALFSVGDSHASQGDSELCGTAIECSMSGKFQLVLHKKKDLEGGFFADLDYPFLE 713 Query: 701 TPEEWILHGFSYGNYLRELGRNAQSEIYQRSSVDLALRNAFRATRKFLMECYRLSEDEAL 760 T EW++ GFSY N+L +LG ++Q+++Y+++++DLA+R+AFR TR++LM ++L+EDEA+ Sbjct: 714 TETEWLIQGFSYANHLTQLGPHSQTDVYKKATLDLAMRDAFRKTRRYLMTAHKLTEDEAI 773 Query: 761 ALISLGVDFGVTQVADGNWGVHAIVRKSML 790 ++IS+GVDFG+TQV +GNWGVHA++RKS+ Sbjct: 774 SVISVGVDFGITQVVNGNWGVHAVIRKSIF 803 >ref|YP_001022787.1| AraC family transcriptional regulator [Methylibium petroleiphilum PM1] gb|ABM96552.1| transcriptional regulator, AraC family [Methylibium petroleiphilum PM1] Length = 844 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/827 (48%), Positives = 517/827 (62%), Gaps = 42/827 (5%) Query: 1 MVATTYRVSVDAIPRQNRREVWREALAG-LQLDCELPEAGQFQFGELTAKRSTSGGQLAL 59 M+ R S DA P R W E +A L G ++A+ S A Sbjct: 1 MLDDLRRFSTDAFPEDLRPAAWAEVMAKVLMAPAAPAYDAPPLAGYVSARSSALESVFAR 60 Query: 60 LRSTEQ-QIVCSGHAASPGMPARVAIIFHGYGRGSITSGQRSCEFADNDVSVCDLQSPWR 118 L S+ Q + G+A G + + G G + GQ S A + + D PWR Sbjct: 61 LGSSPQVWLPHPGNARRGGHTVLMLALLEG--SGLVVEGQESVALAAGGIVLLDPARPWR 118 Query: 119 MTLREDFEILLLELPRERLLGRLGHNRLR-LPAVLGATIAAASVRPVMRTLGGNFAILDK 177 + L DF +++ L + RL + L + T A ++R++ L + Sbjct: 119 VELNTDFRAVVIRLESASFVLRLVRTSGQDLNTISPKTGVGAVCLNLVRSIADELDQLGR 178 Query: 178 ADLATAEVAVTELVAGALLGETRLDAEAM------TQVQAGHLRRVDAAIEAQLGNAGLT 231 +L E + EL+ L DA+A T VQ GHLRRV +EA+LG+A LT Sbjct: 179 HELLPIEATLMELLVTCLSHVDDEDAQAAASPDDSTSVQLGHLRRVCRTVEARLGDAELT 238 Query: 232 IADIARQEGLSQRYLQRLFERQNTTFSAYVRERRLERCCNDLIDPNYADQRIAEISYRWG 291 + IA EGLS RY+Q+LF+ + +F Y++ RRLERC DL + A IAE+ +RWG Sbjct: 239 LEAIAALEGLSPRYIQKLFKAASASFGEYLKARRLERCRLDLANRALAHFTIAELCFRWG 298 Query: 292 FTDQAHFSRMFSATYGTSPRDFRKAVPRDVEGERT-RGRPRLARGTATVLRLAPNLASSL 350 F D A+FSR F+A +G SP+ +R A P D T RG P A V + A+++ Sbjct: 299 FGDAANFSRAFTARFGVSPKAYRAAPPADAAAGPTQRGAP-----AAGVATASSARAAAV 353 Query: 351 ASSPVARE-----------------TVAPLEPVVPVEPPAAVPE-----GRGASHHHLKV 388 A +P AR +AP + VP A PE G +H++ V Sbjct: 354 ADTPEARRRQFEAVLTDHERYALALALAP-KRAVPHAAEAGFPEALPGAGHAPEYHYIPV 412 Query: 389 SRETAHWGYLSRAIPPVMSVQSGAVVTIETLTQHAFDDYERMIKGDPGAESVFRWTAEGK 448 S T HWGYLSR + PV+SV+SG VVTIETLTQHA DD ERMI GDPGAESVF WTA K Sbjct: 413 SDRTVHWGYLSRTLKPVISVRSGDVVTIETLTQHASDDRERMIDGDPGAESVFHWTATRK 472 Query: 449 SVERRGAGPMDGSIFGRGAGEGFGVHICTGPIYVCGAEPGDVLEVQILDIWPRPSANPAY 508 +V RRGAGPMD S+FGRGAGEGFGVHICTGP++V GAE GDVLEV+ILDI RPS +P + Sbjct: 473 AVARRGAGPMDASVFGRGAGEGFGVHICTGPVHVRGAETGDVLEVRILDIRARPSCHPQH 532 Query: 509 AGKSFGSNAAAWWGFQYNDLIDPPAKRETITIFE--TDAEAEWARAVYSYRWTPQTDPFG 566 GK FGSNAAAWWG+QY+DL+ P KRE +T++E TD +A+AVYS+RWTPQTDP G Sbjct: 533 RGKLFGSNAAAWWGYQYHDLLTEPKKREVVTLYELQTDVAEPYAKAVYSFRWTPQTDPDG 592 Query: 567 VRHETMDYPGVPVDHATVEKRSGVLAGVRIPARLHFGFMAVAPRESDIIDSIPPGYFGGN 626 VRHET+DYPGVPVD A+V+KR GVLA R+P R HFG +AVAP+ES +IDS+PPGYFGGN Sbjct: 593 VRHETIDYPGVPVDPASVDKRYGVLAKARVPIRPHFGLLAVAPKESGLIDSVPPGYFGGN 652 Query: 627 VDNWRATKGTTLYLPVAVPGALFSIGDPHFAQGDGEVNGTALELSLTGQFRFILHKSGKA 686 +DNWRA KG L+LPV+V GALFS+GDPH +QGDGEV GTA+E SLTG F+ +LHK + Sbjct: 653 LDNWRAGKGARLFLPVSVEGALFSVGDPHASQGDGEVCGTAIECSLTGSFQLVLHKRAQI 712 Query: 687 TKPHVEGLAHPLLETPEEWILHGFSYGNYLRELGRNAQSEIYQRSSVDLALRNAFRATRK 746 + L HP L+ + W++ GFS+ N+L ELG AQ+++YQ+SS+DLA+R+AFR R+ Sbjct: 713 ADGFLADLNHPFLDAEDAWVVQGFSFANHLAELGAQAQTQVYQKSSLDLAMRDAFRKARR 772 Query: 747 FLMECYRLSEDEALALISLGVDFGVTQVADGNWGVHAIVRKSMLXGQ 793 +LM+ + L EDEAL+L+S+ VDFGVTQVADGNWGVHA++RK++ Q Sbjct: 773 YLMQAHGLDEDEALSLMSVAVDFGVTQVADGNWGVHAVIRKAIFPPQ 819