BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0043.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_483691.1| hypothetical protein RPB_0068 [Rhodopseudomonas...   225   2e-57
ref|NP_766863.1| hypothetical protein blr0223 [Bradyrhizobium ja...   220   5e-56
ref|YP_530401.1| hypothetical protein RPC_0507 [Rhodopseudomonas...   216   1e-54
ref|YP_567233.1| hypothetical protein RPD_0092 [Rhodopseudomonas...   213   1e-53
ref|NP_945964.1| hypothetical protein RPA0611 [Rhodopseudomonas ...   213   1e-53

>ref|YP_483691.1| hypothetical protein RPB_0068 [Rhodopseudomonas palustris HaA2]
 gb|ABD04780.1| Protein of unknown function DUF985 [Rhodopseudomonas palustris
           HaA2]
          Length = 145

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 120/142 (84%)

Query: 1   VMADLSAADIIARLALQPHPEGGHYRETFRDARCDASGRAHSTAIYFLLARGERSHWHRI 60
           + A LSAA++IA+L L PHPEGGHYRETFRD+RCD++GR+ STAIYFLLARGERSHWHRI
Sbjct: 1   MRATLSAAEVIAQLGLAPHPEGGHYRETFRDSRCDSTGRSASTAIYFLLARGERSHWHRI 60

Query: 61  DAVEMWHYYAGAPLTLRIAQDGAPHAITLGPDVAHGEQPQAIVPAGAWQAAESSGDWTLV 120
           DAVE+WHYYAGA LTL IA D    A+ LGPDVA GE PQAIVP  AWQAA S+GDWTLV
Sbjct: 61  DAVEIWHYYAGATLTLEIADDNGHRAVALGPDVAAGETPQAIVPPQAWQAAVSTGDWTLV 120

Query: 121 GCTVAPGFEFARFELAPKGWEP 142
           GCTVAPGF+F  FELAP GW P
Sbjct: 121 GCTVAPGFQFEHFELAPSGWSP 142


>ref|NP_766863.1| hypothetical protein blr0223 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45488.1| blr0223 [Bradyrhizobium japonicum USDA 110]
          Length = 140

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 6   SAADIIARLALQPHPEGGHYRETFRDARCDASGRAHSTAIYFLLARGERSHWHRIDAVEM 65
           +AA+IIARL L+PHPEGGHYRETFRD   DA+GR+ ST IYFLLARGERSHWHRIDAVE+
Sbjct: 3   TAAEIIARLELRPHPEGGHYRETFRDQTTDANGRSRSTLIYFLLARGERSHWHRIDAVEI 62

Query: 66  WHYYAGAPLTLRIAQDG-APHAITLGPDVAHGEQPQAIVPAGAWQAAESSGDWTLVGCTV 124
           WHYYAG+PL LRIA +G + H + LG D+  GE+PQAIVPA AWQ AE++G+WTLVGCTV
Sbjct: 63  WHYYAGSPLMLRIAHEGCSQHEVRLGTDLVSGERPQAIVPADAWQMAETTGEWTLVGCTV 122

Query: 125 APGFEFARFELAPKGWEP 142
           AP FEFA+FELAPKGWEP
Sbjct: 123 APAFEFAKFELAPKGWEP 140


>ref|YP_530401.1| hypothetical protein RPC_0507 [Rhodopseudomonas palustris BisB18]
 gb|ABD86082.1| protein of unknown function DUF985 [Rhodopseudomonas palustris
           BisB18]
          Length = 147

 Score =  216 bits (549), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/141 (74%), Positives = 119/141 (84%)

Query: 4   DLSAADIIARLALQPHPEGGHYRETFRDARCDASGRAHSTAIYFLLARGERSHWHRIDAV 63
           DL+AA+IIARL L PHPEGGH+RETFRDAR D +GRA STAIYFLLA+GERSHWHRIDAV
Sbjct: 6   DLTAAEIIARLELAPHPEGGHFRETFRDARVDPAGRAASTAIYFLLAKGERSHWHRIDAV 65

Query: 64  EMWHYYAGAPLTLRIAQDGAPHAITLGPDVAHGEQPQAIVPAGAWQAAESSGDWTLVGCT 123
           E+WHYYAGAPL L+IA       + LGPD+A G+ PQ +VP  AWQAA+SSGDWTLVGCT
Sbjct: 66  EVWHYYAGAPLELQIADAEGRRTLRLGPDLAAGQLPQGLVPPHAWQAAQSSGDWTLVGCT 125

Query: 124 VAPGFEFARFELAPKGWEPTS 144
           VAPGF+FA FELA KGWEP +
Sbjct: 126 VAPGFDFATFELAEKGWEPAA 146


>ref|YP_567233.1| hypothetical protein RPD_0092 [Rhodopseudomonas palustris BisB5]
 gb|ABE37332.1| protein of unknown function DUF985 [Rhodopseudomonas palustris
           BisB5]
          Length = 142

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 113/137 (82%)

Query: 6   SAADIIARLALQPHPEGGHYRETFRDARCDASGRAHSTAIYFLLARGERSHWHRIDAVEM 65
           SAA++IARL LQPHPEGGH+RETFRD RCDASGR+ STAIYFLLA GERSHWHRIDA+E+
Sbjct: 3   SAAEMIARLKLQPHPEGGHFRETFRDPRCDASGRSFSTAIYFLLASGERSHWHRIDAIEV 62

Query: 66  WHYYAGAPLTLRIAQDGAPHAITLGPDVAHGEQPQAIVPAGAWQAAESSGDWTLVGCTVA 125
           WHYYAGA L L IA      AI LGPDVA GEQPQAIVP  AWQAA ++GDWTLVGCTVA
Sbjct: 63  WHYYAGAALALEIADADGHRAIRLGPDVAAGEQPQAIVPPHAWQAAVTTGDWTLVGCTVA 122

Query: 126 PGFEFARFELAPKGWEP 142
           PGF F  FELAP  W P
Sbjct: 123 PGFAFEHFELAPPDWSP 139


>ref|NP_945964.1| hypothetical protein RPA0611 [Rhodopseudomonas palustris CGA009]
 emb|CAE26055.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 145

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 115/139 (82%)

Query: 4   DLSAADIIARLALQPHPEGGHYRETFRDARCDASGRAHSTAIYFLLARGERSHWHRIDAV 63
            LSAA++IARL LQPHPEGGHYRETFRD RCDASGR++STAI+FLL  GERSHWHRIDAV
Sbjct: 5   SLSAAEVIARLGLQPHPEGGHYRETFRDPRCDASGRSYSTAIHFLLRAGERSHWHRIDAV 64

Query: 64  EMWHYYAGAPLTLRIAQDGAPHAITLGPDVAHGEQPQAIVPAGAWQAAESSGDWTLVGCT 123
           E+WHYYAGA L L +A +    A TLGPD+  G  PQ IVP  AWQAA S+G+WTLVGCT
Sbjct: 65  EVWHYYAGAALMLEVAGEDGHRAATLGPDLVAGHLPQVIVPPQAWQAATSTGEWTLVGCT 124

Query: 124 VAPGFEFARFELAPKGWEP 142
           VAPGF+FA FELAP GWEP
Sbjct: 125 VAPGFDFAGFELAPPGWEP 143