BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0041.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766861.1| hypothetical protein bll0221 [Bradyrhizobium ja... 429 e-118 ref|YP_001243360.1| hypothetical protein BBta_7608 [Bradyrhizobi... 420 e-115 ref|YP_001202748.1| putative SAM-dependent methyltransferase [Br... 417 e-115 ref|YP_575817.1| hypothetical protein Nham_0467 [Nitrobacter ham... 414 e-114 ref|YP_316993.1| hypothetical protein Nwi_0374 [Nitrobacter wino... 407 e-112 >ref|NP_766861.1| hypothetical protein bll0221 [Bradyrhizobium japonicum USDA 110] dbj|BAC45486.1| bll0221 [Bradyrhizobium japonicum USDA 110] Length = 246 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/244 (83%), Positives = 226/244 (92%) Query: 1 MDVIDLRDFYSQRLGIVARQLINRGIRARWPNAEGQRVLGLGYPTPYLGLFRESCERCIA 60 +DV+DLR+FYS+RLGIVARQ+INRGIR RWP AEGQRVLG+GYPTPYLGLFRE ERC+A Sbjct: 3 IDVVDLREFYSRRLGIVARQMINRGIRERWPRAEGQRVLGIGYPTPYLGLFREDAERCLA 62 Query: 61 FMPAAQGVLKWPTGRPALATLIDEFSMPLPDAAVDRVLLVHALEMSDDPERLLREVWRVL 120 FMPAAQGVLKWPTGRPALA+L+DEFS+PLPD+AVDR+LLVHALEMSDDP LLREVWRVL Sbjct: 63 FMPAAQGVLKWPTGRPALASLVDEFSLPLPDSAVDRILLVHALEMSDDPAALLREVWRVL 122 Query: 121 SPSGRLIAIIPNRRGVWTRTDATPFGHGRPYSRAQITQLLRQTWFTPSSWGEALFMPPVQ 180 SPSGR+IA+IPNRRGVWTR+D TPFGHGRPYSR+QIT LLRQTWFTP++WGEALFMPP Sbjct: 123 SPSGRVIAVIPNRRGVWTRSDNTPFGHGRPYSRSQITDLLRQTWFTPTAWGEALFMPPYA 182 Query: 181 GSWFLRSAMAWERVGAALSMPFAGVHIVEATKQVYRAIPARRERTQLIPSLRPVLVPSST 240 G W L+SA WER GAALS+PFAGVHIVEATKQVYRAIPA+RER +LIPSL+PVLVPSST Sbjct: 183 GGWVLKSAQMWERAGAALSLPFAGVHIVEATKQVYRAIPAKRERARLIPSLKPVLVPSST 242 Query: 241 ATRK 244 TR Sbjct: 243 VTRS 246 >ref|YP_001243360.1| hypothetical protein BBta_7608 [Bradyrhizobium sp. BTAi1] gb|ABQ39454.1| hypothetical protein BBta_7608 [Bradyrhizobium sp. BTAi1] Length = 255 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/250 (82%), Positives = 223/250 (89%), Gaps = 1/250 (0%) Query: 1 MDVIDLRDFYSQRLGIVARQLINRGIRARWPNAEGQRVLGLGYPTPYLGLFRESCERCIA 60 MDVIDLR+FYS RLGIVAR LINRGIRARWP+A GQRVLG+GYPTPYLGLFRE ERCIA Sbjct: 1 MDVIDLRNFYSGRLGIVARLLINRGIRARWPSAAGQRVLGIGYPTPYLGLFREDSERCIA 60 Query: 61 FMPAAQGVLKWPTGRPALATLIDEFSMPLPDAAVDRVLLVHALEMSDDPERLLREVWRVL 120 FMPAAQGVLKWPT RP LA+L+DEFS+PLPD+AVDR+L+VHALEMSDDP LLREVWRVL Sbjct: 61 FMPAAQGVLKWPTARPTLASLVDEFSLPLPDSAVDRILIVHALEMSDDPAGLLREVWRVL 120 Query: 121 SPSGRLIAIIPNRRGVWTRTDATPFGHGRPYSRAQITQLLRQTWFTPSSWGEALFMPPVQ 180 +PSGRLI +IPNRRGVWTRTD TPFGHGRPYSR+QITQLLRQTWFTPS+WGEALFMPP+ Sbjct: 121 APSGRLIIVIPNRRGVWTRTDNTPFGHGRPYSRSQITQLLRQTWFTPSAWGEALFMPPI- 179 Query: 181 GSWFLRSAMAWERVGAALSMPFAGVHIVEATKQVYRAIPARRERTQLIPSLRPVLVPSST 240 G WFL+SAMAWERVGAALS+PFAGVHIVEATKQVYR IPARRER +LIP L PVL PS + Sbjct: 180 GGWFLKSAMAWERVGAALSLPFAGVHIVEATKQVYRVIPARRERIRLIPRLEPVLAPSPS 239 Query: 241 ATRKSTHTEA 250 S A Sbjct: 240 TQGSSREGTA 249 >ref|YP_001202748.1| putative SAM-dependent methyltransferase [Bradyrhizobium sp. ORS 278] emb|CAL74505.1| conserved hypothetical protein; putative SAM-dependent methyltransferase [Bradyrhizobium sp. ORS 278] Length = 268 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/241 (82%), Positives = 222/241 (92%), Gaps = 1/241 (0%) Query: 1 MDVIDLRDFYSQRLGIVARQLINRGIRARWPNAEGQRVLGLGYPTPYLGLFRESCERCIA 60 MDVIDLR+FYS RLGIVAR LINRGIRARWP+A GQRVLG+GYPTPYLGLFRE ERCIA Sbjct: 4 MDVIDLRNFYSGRLGIVARLLINRGIRARWPSAAGQRVLGVGYPTPYLGLFREDSERCIA 63 Query: 61 FMPAAQGVLKWPTGRPALATLIDEFSMPLPDAAVDRVLLVHALEMSDDPERLLREVWRVL 120 FMPAAQGVLKWPT RP LA+L+DEFS+PLPDAAVDR+L+VHALEMSDDP LLRE+WRVL Sbjct: 64 FMPAAQGVLKWPTARPTLASLVDEFSLPLPDAAVDRILIVHALEMSDDPAGLLREMWRVL 123 Query: 121 SPSGRLIAIIPNRRGVWTRTDATPFGHGRPYSRAQITQLLRQTWFTPSSWGEALFMPPVQ 180 +P+GR+I +IPNRRG+WTR+D TPFGHGRPYSR+QITQLLRQTWFTPS+WGEALFMPPV Sbjct: 124 APAGRMIIVIPNRRGIWTRSDNTPFGHGRPYSRSQITQLLRQTWFTPSAWGEALFMPPV- 182 Query: 181 GSWFLRSAMAWERVGAALSMPFAGVHIVEATKQVYRAIPARRERTQLIPSLRPVLVPSST 240 G WFL+SAMAWERVGAALS+PFAGVHIVEATKQVYR IPARRER +LIP L PVL P+ + Sbjct: 183 GGWFLKSAMAWERVGAALSLPFAGVHIVEATKQVYRVIPARRERIRLIPRLEPVLAPAPS 242 Query: 241 A 241 A Sbjct: 243 A 243 >ref|YP_575817.1| hypothetical protein Nham_0467 [Nitrobacter hamburgensis X14] gb|ABE61357.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 246 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/244 (79%), Positives = 220/244 (90%) Query: 1 MDVIDLRDFYSQRLGIVARQLINRGIRARWPNAEGQRVLGLGYPTPYLGLFRESCERCIA 60 +DVIDLRDFY+QRLGIVAR+LINRGI A WP+ EGQ V+GLGYPTPYLGLFRE CERCIA Sbjct: 3 IDVIDLRDFYAQRLGIVARRLINRGIHAHWPSMEGQCVVGLGYPTPYLGLFREDCERCIA 62 Query: 61 FMPAAQGVLKWPTGRPALATLIDEFSMPLPDAAVDRVLLVHALEMSDDPERLLREVWRVL 120 FMPAAQGVLKWPT RPALATL+DE S+PL DA DR+LLVHALEMSDDPE LLREVWRVL Sbjct: 63 FMPAAQGVLKWPTARPALATLVDELSLPLQDAVADRILLVHALEMSDDPESLLREVWRVL 122 Query: 121 SPSGRLIAIIPNRRGVWTRTDATPFGHGRPYSRAQITQLLRQTWFTPSSWGEALFMPPVQ 180 SPSGR++ I+PNRRG+WTRTDATPFG+GRPYSR+QITQLLRQTWFTPS+WGEALF+PP+ Sbjct: 123 SPSGRMMVIVPNRRGIWTRTDATPFGYGRPYSRSQITQLLRQTWFTPSAWGEALFVPPIN 182 Query: 181 GSWFLRSAMAWERVGAALSMPFAGVHIVEATKQVYRAIPARRERTQLIPSLRPVLVPSST 240 G WFLRSA AWERVGAALS+PFAGVHIVEATKQVYR I A+R+ ++LIP+L P L PSS Sbjct: 183 GGWFLRSAAAWERVGAALSLPFAGVHIVEATKQVYRPIAAKRQHSRLIPALPPALAPSSC 242 Query: 241 ATRK 244 + + Sbjct: 243 SAEE 246 >ref|YP_316993.1| hypothetical protein Nwi_0374 [Nitrobacter winogradskyi Nb-255] gb|ABA03641.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 246 Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/239 (79%), Positives = 214/239 (89%) Query: 1 MDVIDLRDFYSQRLGIVARQLINRGIRARWPNAEGQRVLGLGYPTPYLGLFRESCERCIA 60 +DVIDLRDFYSQRLG+VAR+LI+R I A WPN +GQ V GLGYPTPYLGLFRE CERCIA Sbjct: 3 IDVIDLRDFYSQRLGVVARRLISRAIHAHWPNMKGQCVAGLGYPTPYLGLFREECERCIA 62 Query: 61 FMPAAQGVLKWPTGRPALATLIDEFSMPLPDAAVDRVLLVHALEMSDDPERLLREVWRVL 120 MPAAQGVLKWPT RPALATL+DEFS+PL DA DR+LLVHALEMSDDPE LLREVWRVL Sbjct: 63 LMPAAQGVLKWPTARPALATLVDEFSLPLRDAVADRILLVHALEMSDDPESLLREVWRVL 122 Query: 121 SPSGRLIAIIPNRRGVWTRTDATPFGHGRPYSRAQITQLLRQTWFTPSSWGEALFMPPVQ 180 SPSGR++ I+PNRRG+WTRTD TPFGHG+PYSR+QITQLLRQTWFTPS+WGEALF+PP+ Sbjct: 123 SPSGRMMVIVPNRRGIWTRTDVTPFGHGQPYSRSQITQLLRQTWFTPSAWGEALFVPPIN 182 Query: 181 GSWFLRSAMAWERVGAALSMPFAGVHIVEATKQVYRAIPARRERTQLIPSLRPVLVPSS 239 G WFLRSA WER+GAALS+PFAGVH+VEATKQVYR I A+RE ++LIP L+P L PSS Sbjct: 183 GGWFLRSAAVWERIGAALSLPFAGVHLVEATKQVYRPIAAKREHSRLIPVLQPTLAPSS 241