BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0040.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_483694.1| hypothetical protein RPB_0071 [Rhodopseudomonas... 234 1e-59 ref|NP_766860.1| hypothetical protein blr0220 [Bradyrhizobium ja... 216 3e-54 ref|ZP_01044804.1| hypothetical protein NB311A_04719 [Nitrobacte... 213 3e-53 ref|YP_002287116.1| hypothetical protein OCAR_4100 [Oligotropha ... 210 2e-52 ref|YP_001202749.1| hypothetical protein BRADO0569 [Bradyrhizobi... 206 2e-51 >ref|YP_483694.1| hypothetical protein RPB_0071 [Rhodopseudomonas palustris HaA2] gb|ABD04783.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 244 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 170/263 (64%), Positives = 196/263 (74%), Gaps = 29/263 (11%) Query: 1 MRNGQNNKRMRNRNNNNNNNNNNRRGQN--PLTRVYESNGPDIKIRGTASHVAEKYVQLA 58 MRNGQNNKR+RNRN+ +N NNNN + P+TRV+ESNGPDIKIRGTASHVAEKYVQLA Sbjct: 1 MRNGQNNKRLRNRNSGSNTNNNNNNRRGQNPMTRVFESNGPDIKIRGTASHVAEKYVQLA 60 Query: 59 RDARSSGDPVAAENYYQHAEHYYRIIAAAQEQFRQN--QQPPRPDAEVTPTEDDDSDGYS 116 RDARSSGDPVAAENYYQHAEHY+R+IAAAQEQFRQN QQ PR D +++ +DD YS Sbjct: 61 RDARSSGDPVAAENYYQHAEHYFRLIAAAQEQFRQNQPQQAPRIDNDMSENDDDGESDYS 120 Query: 117 SFGQEPGFVPQQQQPFMRDNGQQPYQRDQQQPREHRERDQ-QPREHRE----REHRPQPQ 171 +FG EPG VP QQQP Q + QPRE RE+ Q QPRE RE REHRPQPQ Sbjct: 121 NFGAEPGLVPVQQQP-------QSF-----QPREPREQPQFQPREPREQPQPREHRPQPQ 168 Query: 172 YQPQPQNQPQPAMADAGVDRLPSFITGGAQPQVN-GAYEGNNGGAERGERSERFPRRRRR 230 + P+ + QPQP++ DAGVDRLPSFIT G QPQ++ A+EG GG GER RRRRR Sbjct: 169 FTPRVE-QPQPSV-DAGVDRLPSFIT-GPQPQISPAAFEGATGGG--GERFPP--RRRRR 221 Query: 231 PHGPRPDMAAQPAPSDDFNPGNE 253 PH PR D AA P P++D +PGNE Sbjct: 222 PHAPRGDAAAAPVPAEDASPGNE 244 >ref|NP_766860.1| hypothetical protein blr0220 [Bradyrhizobium japonicum USDA 110] dbj|BAC45485.1| blr0220 [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 162/232 (69%), Positives = 179/232 (77%), Gaps = 30/232 (12%) Query: 1 MRNGQNNKRMRNRNNNNNNNNNNRRGQNPLTRVYESNGPDIKIRGTASHVAEKYVQLARD 60 MRNGQN +RMRNRNNNNNNN GQNP+TRVYESNGPDIKIRGTASH+AEKY+QLARD Sbjct: 1 MRNGQNKQRMRNRNNNNNNNRR---GQNPMTRVYESNGPDIKIRGTASHIAEKYLQLARD 57 Query: 61 ARSSGDPVAAENYYQHAEHYYRIIAAAQEQFRQNQQPPRPDAEVTPTED---DDSDGYSS 117 ARSSGDPVAAENYYQHAEHY+R+IAAAQEQFRQNQQ PR D ++ D DD + +S+ Sbjct: 58 ARSSGDPVAAENYYQHAEHYFRLIAAAQEQFRQNQQ-PRGDEPISSNSDDGEDDGENFSN 116 Query: 118 FGQEPGFV--PQQQQPFMRDNGQQPYQRDQQQPREHRERD---------QQPREHREREH 166 FGQEPGFV PQQQQPFMRD + QRD Q R+H++RD QQPREHRER+H Sbjct: 117 FGQEPGFVPQPQQQQPFMRD---RDGQRDHHQ-RDHQQRDNQPSYQRDNQQPREHRERDH 172 Query: 167 R---PQPQYQPQPQNQPQPAMADAG-VDRLPSFITGGAQPQVNGAYEGNNGG 214 R Q Q QP P NQPQP +ADAG VDRLPSFIT GAQPQVN G NGG Sbjct: 173 RPQPQQYQPQPMPPNQPQPVIADAGSVDRLPSFIT-GAQPQVN---VGANGG 220 >ref|ZP_01044804.1| hypothetical protein NB311A_04719 [Nitrobacter sp. Nb-311A] gb|EAQ37585.1| hypothetical protein NB311A_04719 [Nitrobacter sp. Nb-311A] Length = 233 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 157/257 (61%), Positives = 173/257 (67%), Gaps = 28/257 (10%) Query: 1 MRNGQNNKRMRNRNNNNNNNNNNRRGQNPLTRVYESNGPDIKIRGTASHVAEKYVQLARD 60 MRNGQNN + NNNNNNNNNRRGQNP+TRV+ESNGPDIKIRGTASHVAEKYVQLARD Sbjct: 1 MRNGQNNNKRMRNRNNNNNNNNNRRGQNPMTRVFESNGPDIKIRGTASHVAEKYVQLARD 60 Query: 61 ARSSGDPVAAENYYQHAEHYYRIIAAAQEQFRQNQQPPRPDAEVTPTE---DDDSDGYSS 117 ARSSGDPVAAENYYQHAEHY+R+IAAAQEQFRQ+Q +P +V TE DDD + YS+ Sbjct: 61 ARSSGDPVAAENYYQHAEHYFRLIAAAQEQFRQSQPQQQPRIDVDATEEAGDDDGENYSN 120 Query: 118 FGQEPGFVPQQQQPFMRDNGQQPYQRDQQQPREHRERDQQPREHREREHRPQPQYQPQPQ 177 FG EPGFVP QQ + QPYQRDQQQPRE+R QPQP Sbjct: 121 FGAEPGFVPVQQPRDQQQREAQPYQRDQQQPREYR--------------------QPQPA 160 Query: 178 NQPQPAMADAGVDRLPSFITGGAQPQVNGA-YEGNNGGAERGERSERFPRRRRRPHGPRP 236 QP + GVDRLPSFIT G+QPQVNG +EGN RRRR Sbjct: 161 IQP---ADNGGVDRLPSFIT-GSQPQVNGGRFEGNGHQGGERSDRFPPRRRRRPHGPRPD 216 Query: 237 DMAAQPAPSDDFNPGNE 253 M PAPS+DFNPGNE Sbjct: 217 SMVQPPAPSEDFNPGNE 233 >ref|YP_002287116.1| hypothetical protein OCAR_4100 [Oligotropha carboxidovorans OM5] ref|YP_004631376.1| hypothetical protein OCA5_c04100 [Oligotropha carboxidovorans OM5] gb|ACI91251.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] gb|AEI01560.1| hypothetical protein OCA4_c04090 [Oligotropha carboxidovorans OM4] gb|AEI05135.1| hypothetical protein OCA5_c04100 [Oligotropha carboxidovorans OM5] Length = 229 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/224 (60%), Positives = 157/224 (70%), Gaps = 29/224 (12%) Query: 1 MRNGQNN-KRMRNRNNNNNNNNNNRRGQNPLTRVYESNGPDIKIRGTASHVAEKYVQLAR 59 MRNGQNN KRMR R+ N+ NN RRGQNP+TRV+ESNGPDIKIRGTASH+AEKYVQLAR Sbjct: 1 MRNGQNNNKRMRGRSGGNHGNN--RRGQNPMTRVFESNGPDIKIRGTASHIAEKYVQLAR 58 Query: 60 DARSSGDPVAAENYYQHAEHYYRIIAAAQEQFRQNQQPPRPD--AEVTPTED-DDSDGYS 116 DARSSGDPVAAENYYQHAEHY+R+IAAAQEQ RQ+Q + AE +ED + D YS Sbjct: 59 DARSSGDPVAAENYYQHAEHYFRLIAAAQEQLRQSQPQQQQPPRAEGESSEDFSEEDNYS 118 Query: 117 SFGQEPGFVPQQQQPFMRDNGQQPYQRDQQQPREHRERDQQPREHREREHRPQPQYQPQP 176 +FG EPGF PQ QQ F + QPY + ++QPRE+RE PRE+ Q Sbjct: 119 NFGAEPGFAPQPQQ-FTQREQSQPYPQQREQPREYRE----PRENTR-----------QQ 162 Query: 177 QNQPQPAMADAGVDRLPSFITGGAQPQVNGAYEGNNGGAERGER 220 Q QPQ D+G LPSFITGGA PQ +EG GGA +GER Sbjct: 163 QTQPQ----DSGASGLPSFITGGA-PQPAAPFEG--GGAPQGER 199 >ref|YP_001202749.1| hypothetical protein BRADO0569 [Bradyrhizobium sp. ORS 278] emb|CAL74506.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 279 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 137/228 (60%), Positives = 153/228 (67%), Gaps = 46/228 (20%) Query: 29 PLTRVYESNGPDIKIRGTASHVAEKYVQLARDARSSGDPVAAENYYQHAEHYYRIIAAAQ 88 PLTRV+ESNGPDIKIRGTASHVAEKYVQLARDARSSGDPVAAENYYQHAEHY+R+IAAAQ Sbjct: 27 PLTRVFESNGPDIKIRGTASHVAEKYVQLARDARSSGDPVAAENYYQHAEHYFRLIAAAQ 86 Query: 89 EQFRQNQQPPR-PDAEVTPTEDDDSDGYSSFGQEPGFV-PQ-QQQPFMRDNGQQP----- 140 EQFRQNQ PR D DDD + +S+FGQEPGFV PQ Q QPF+RD GQ+ Sbjct: 87 EQFRQNQPQPRNTDDLTVDDLDDDGESFSNFGQEPGFVQPQPQAQPFVRDGGQRERGDNQ 146 Query: 141 --------------YQRDQQQPREHRERDQQPREHRE---------------REHRPQPQ 171 R+ +QPREHRE ++PREHRE REHR +PQ Sbjct: 147 QPYQRDQQQPREHREAREHRQPREHRE-PREPREHREPRENREAQEHRDREPREHRERPQ 205 Query: 172 ---YQPQPQNQPQPAMADAGVDRLPSFITGGAQPQVNGAYEGNNGGAE 216 YQP QPQP +AD+GVDRLPSFIT G QPQ+ A GGAE Sbjct: 206 PAAYQP----QPQPVIADSGVDRLPSFIT-GPQPQIANAPAAFEGGAE 248