BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0038.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767683.1| transcriptional regulator [Bradyrhizobium japon...   194   3e-48
ref|YP_001236895.1| GntR family transcriptional regulator [Brady...   186   1e-45
ref|YP_001208626.1| GntR family transcriptional regulator [Brady...   184   4e-45
ref|ZP_08628989.1| transcriptional regulator, GntR family [Brady...   174   4e-42
ref|NP_946815.1| GntR family transcriptional regulator [Rhodopse...   172   1e-41

>ref|NP_767683.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46308.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 253

 Score =  194 bits (494), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/100 (94%), Positives = 95/100 (95%)

Query: 1   VLSYTGNPERFHEVNERFHNAIYAGSQNAYIAEITLATRVRVQPFRRAQFRNLGRLAKSH 60
           VLSYTGNP+RFHEVNERFHNAIYAGSQN YIAEITLATRVRVQPFRRAQFRNLGRLAKS 
Sbjct: 154 VLSYTGNPDRFHEVNERFHNAIYAGSQNGYIAEITLATRVRVQPFRRAQFRNLGRLAKSQ 213

Query: 61  AEHDRVVVAIMRGDKTGAAAAMRAHIEQVRGEYETYAVSV 100
           AEHDRVVVAIMRGDK GAAAAMRAHIE VRGEYE YAVSV
Sbjct: 214 AEHDRVVVAIMRGDKQGAAAAMRAHIELVRGEYEIYAVSV 253


>ref|YP_001236895.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ32989.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1]
          Length = 243

 Score =  186 bits (471), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/99 (89%), Positives = 94/99 (94%)

Query: 2   LSYTGNPERFHEVNERFHNAIYAGSQNAYIAEITLATRVRVQPFRRAQFRNLGRLAKSHA 61
           LS+ GNPERFHEVNERFHNAIYAG+ NAYIAEITLATRVRVQPFRRAQFRNLGRLAKSHA
Sbjct: 145 LSHAGNPERFHEVNERFHNAIYAGAHNAYIAEITLATRVRVQPFRRAQFRNLGRLAKSHA 204

Query: 62  EHDRVVVAIMRGDKTGAAAAMRAHIEQVRGEYETYAVSV 100
           EHDRVVVAI+RGDK GAA+AM+AHIE VRGEYE YAVSV
Sbjct: 205 EHDRVVVAILRGDKAGAASAMKAHIELVRGEYEIYAVSV 243


>ref|YP_001208626.1| GntR family transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL80411.1| putative transcriptional regulatory protein, GntR family
           [Bradyrhizobium sp. ORS 278]
          Length = 224

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/99 (88%), Positives = 93/99 (93%)

Query: 2   LSYTGNPERFHEVNERFHNAIYAGSQNAYIAEITLATRVRVQPFRRAQFRNLGRLAKSHA 61
           LS+ GNPERFHEVNERFHN+IYAG+ N YIAEITLATRVRVQPFRRAQFRNLGRLAKSHA
Sbjct: 126 LSHAGNPERFHEVNERFHNSIYAGAHNTYIAEITLATRVRVQPFRRAQFRNLGRLAKSHA 185

Query: 62  EHDRVVVAIMRGDKTGAAAAMRAHIEQVRGEYETYAVSV 100
           EHDRVVVAIMRGDK GAA+AM+AHIE VRGEYE YAVSV
Sbjct: 186 EHDRVVVAIMRGDKAGAASAMKAHIELVRGEYEIYAVSV 224


>ref|ZP_08628989.1| transcriptional regulator, GntR family [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP08348.1| transcriptional regulator, GntR family [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 241

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/100 (83%), Positives = 90/100 (90%)

Query: 1   VLSYTGNPERFHEVNERFHNAIYAGSQNAYIAEITLATRVRVQPFRRAQFRNLGRLAKSH 60
           VLSY GNP+ FHEVNE FHNAIY GSQN Y+AE+ L+TRVRVQPFRRAQFRNLGRLAKS+
Sbjct: 142 VLSYDGNPQLFHEVNEAFHNAIYVGSQNDYVAEMALSTRVRVQPFRRAQFRNLGRLAKSY 201

Query: 61  AEHDRVVVAIMRGDKTGAAAAMRAHIEQVRGEYETYAVSV 100
           AEHDRVVVAIMRGDKTGAA+AMR HIE VR EYE YAVS+
Sbjct: 202 AEHDRVVVAIMRGDKTGAASAMRDHIETVREEYEVYAVSL 241


>ref|NP_946815.1| GntR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 emb|CAE26909.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris
           CGA009]
          Length = 221

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/100 (83%), Positives = 89/100 (89%)

Query: 1   VLSYTGNPERFHEVNERFHNAIYAGSQNAYIAEITLATRVRVQPFRRAQFRNLGRLAKSH 60
           +LS  GNPERFHEVNE FHNAIYAG+ N YIAEITLATRVRVQPFRRAQFRNLGRLAKSH
Sbjct: 122 MLSSQGNPERFHEVNEHFHNAIYAGAHNDYIAEITLATRVRVQPFRRAQFRNLGRLAKSH 181

Query: 61  AEHDRVVVAIMRGDKTGAAAAMRAHIEQVRGEYETYAVSV 100
           AEHDRVV+AI+RGD+ GAA AMR HI+ VR EYE YAVSV
Sbjct: 182 AEHDRVVIAILRGDRDGAAKAMRHHIDLVRDEYEIYAVSV 221