BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0031.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004109950.1| extracellular ligand-binding receptor [Rhodo... 714 0.0 ref|NP_767690.1| branched chain amino acid transport system subs... 712 0.0 ref|NP_947218.1| ABC transporter urea/short-chain binding protei... 709 0.0 ref|YP_001991077.1| branched chain amino acid transport system s... 708 0.0 ref|YP_487221.1| urea/short-chain binding protein of ABC transpo... 706 0.0 >ref|YP_004109950.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU45217.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 404 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/377 (89%), Positives = 359/377 (95%) Query: 1 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFGGGGKGIKVEIVYADHQNKADVGSAIA 60 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDF GGGK IKVEIVYADHQNKADVG+AIA Sbjct: 28 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFAGGGKNIKVEIVYADHQNKADVGNAIA 87 Query: 61 RKWLDVEGVDAIVDVPNSAVGLAINTILRDSRMTFLASSTASSDLTGKACSPNTIQWVND 120 R+WLD EGVDAIVDVPNSAVGL+INT+LR ++MTFLASSTASSDLTGKACSPNTIQWVND Sbjct: 88 RRWLDNEGVDAIVDVPNSAVGLSINTLLRGTKMTFLASSTASSDLTGKACSPNTIQWVND 147 Query: 121 AWATGNTTAAAMMQRGGKDWYFVTVDYALGKGIEAEATNYIEKHGGKVLGSSKHPLGTSD 180 WATGNTTAAAMMQRGGKDWYF+TVDYALGKGIEAEA YIE HGGKVLGS+KHPLGTSD Sbjct: 148 TWATGNTTAAAMMQRGGKDWYFITVDYALGKGIEAEAAKYIEAHGGKVLGSAKHPLGTSD 207 Query: 181 FASFLLQAQSSKAKVIGLANAGGDTINAVKQAAEFGIQQGGQTMVAFLLFVNDIHGMGLK 240 FASFLLQAQSSKA VIGLANAGGDTIN+VKQAAEFGIQQ GQ +VAFLLF+NDIHGMGLK Sbjct: 208 FASFLLQAQSSKAGVIGLANAGGDTINSVKQAAEFGIQQSGQKLVAFLLFINDIHGMGLK 267 Query: 241 VAQGLQLLEAFYWDMNDDTRAFAKRFAARPGMNGKMPSGNQAGVYAATLAYLNAVAATGS 300 VAQGLQL+EAFYWDMNDDTRAFAKRFA RPGMNGKMPSGNQAGVYA+TLAYLNAVAATGS Sbjct: 268 VAQGLQLMEAFYWDMNDDTRAFAKRFAQRPGMNGKMPSGNQAGVYASTLAYLNAVAATGS 327 Query: 301 DDAKAVVPQMKTFKGKDRLFGDTTIRQDGRVIHPMYLFEVKKPEESKYPYDYYKLIATIP 360 DDAK VVPQMK F GKDRLFGD TIRQDGRV+HPMYLFEVKKPEESKYPYDYY+L++TI Sbjct: 328 DDAKDVVPQMKKFSGKDRLFGDVTIRQDGRVVHPMYLFEVKKPEESKYPYDYYRLVSTIA 387 Query: 361 ADQAFRPLADGGCSLVK 377 AD+AFRP+A+GGC LVK Sbjct: 388 ADKAFRPIAEGGCELVK 404 >ref|NP_767690.1| branched chain amino acid transport system substrate binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46315.1| branched chain amino acid transport system substrate binding protein [Bradyrhizobium japonicum USDA 110] Length = 403 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/377 (88%), Positives = 362/377 (96%) Query: 1 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFGGGGKGIKVEIVYADHQNKADVGSAIA 60 VVR+GVLNDISGIFQDTNGMGSVE+ARMAAEDF GGGK IKVEIVYADHQNKADVG+AIA Sbjct: 27 VVRIGVLNDISGIFQDTNGMGSVESARMAAEDFNGGGKNIKVEIVYADHQNKADVGNAIA 86 Query: 61 RKWLDVEGVDAIVDVPNSAVGLAINTILRDSRMTFLASSTASSDLTGKACSPNTIQWVND 120 RKWLDVEGVDAIVDVPNSAVGL+INT+LRDSRMTFLASSTASSDLTGKACSPNTIQWVND Sbjct: 87 RKWLDVEGVDAIVDVPNSAVGLSINTLLRDSRMTFLASSTASSDLTGKACSPNTIQWVND 146 Query: 121 AWATGNTTAAAMMQRGGKDWYFVTVDYALGKGIEAEATNYIEKHGGKVLGSSKHPLGTSD 180 WATGNTTAAAM+ RGGKDWYF+TVD+ALGKGIEAEA YIE HGGKV+GSSKHPLGTSD Sbjct: 147 TWATGNTTAAAMVSRGGKDWYFLTVDFALGKGIEAEAQRYIEAHGGKVIGSSKHPLGTSD 206 Query: 181 FASFLLQAQSSKAKVIGLANAGGDTINAVKQAAEFGIQQGGQTMVAFLLFVNDIHGMGLK 240 FASFLLQAQ+SKA+VIGLANAGGDTINAVKQAAEFGIQQ GQ +VAFLLF+ND+HGMG+K Sbjct: 207 FASFLLQAQNSKAQVIGLANAGGDTINAVKQAAEFGIQQSGQKLVAFLLFINDVHGMGIK 266 Query: 241 VAQGLQLLEAFYWDMNDDTRAFAKRFAARPGMNGKMPSGNQAGVYAATLAYLNAVAATGS 300 VAQGLQL+EAFYWDMNDDTRAFAKRF ARPGMNGKMPSGNQAGVYA+TLAYLNAVAATGS Sbjct: 267 VAQGLQLMEAFYWDMNDDTRAFAKRFGARPGMNGKMPSGNQAGVYASTLAYLNAVAATGS 326 Query: 301 DDAKAVVPQMKTFKGKDRLFGDTTIRQDGRVIHPMYLFEVKKPEESKYPYDYYKLIATIP 360 D++K VP+MK F+GKD+LFGDT IRQDGRV+HPMYLFEVK+PEESKYPYDYYKL++TIP Sbjct: 327 DNSKDAVPEMKKFRGKDKLFGDTAIRQDGRVVHPMYLFEVKRPEESKYPYDYYKLVSTIP 386 Query: 361 ADQAFRPLADGGCSLVK 377 A+QAFRPLA+GGC LVK Sbjct: 387 AEQAFRPLAEGGCELVK 403 >ref|NP_947218.1| ABC transporter urea/short-chain binding protein [Rhodopseudomonas palustris CGA009] emb|CAE27314.1| possible urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris CGA009] Length = 404 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/376 (89%), Positives = 358/376 (95%) Query: 2 VRVGVLNDISGIFQDTNGMGSVEAARMAAEDFGGGGKGIKVEIVYADHQNKADVGSAIAR 61 VRVGVLNDISGIFQDTNGMGSVEAARMAAEDF GGGK +KVEIVYADHQNKADVG+AIAR Sbjct: 29 VRVGVLNDISGIFQDTNGMGSVEAARMAAEDFAGGGKNLKVEIVYADHQNKADVGNAIAR 88 Query: 62 KWLDVEGVDAIVDVPNSAVGLAINTILRDSRMTFLASSTASSDLTGKACSPNTIQWVNDA 121 +WLD EGVDAIVDVPNSAVGL+INT+LR S+MTFLASSTASSDLTGKACSPNTIQWVND Sbjct: 89 RWLDNEGVDAIVDVPNSAVGLSINTLLRGSKMTFLASSTASSDLTGKACSPNTIQWVNDT 148 Query: 122 WATGNTTAAAMMQRGGKDWYFVTVDYALGKGIEAEATNYIEKHGGKVLGSSKHPLGTSDF 181 WATGNTTAAAMMQRGGKDWYF+TVDYALGKGIEAEA YIE HGGKVLGS+KHPLGTSDF Sbjct: 149 WATGNTTAAAMMQRGGKDWYFITVDYALGKGIEAEAAKYIEAHGGKVLGSAKHPLGTSDF 208 Query: 182 ASFLLQAQSSKAKVIGLANAGGDTINAVKQAAEFGIQQGGQTMVAFLLFVNDIHGMGLKV 241 ASFLLQAQSSKA VIGLANAGGDTIN+VKQAAEFGIQQ GQ +VAFLLF+NDIHGMGLKV Sbjct: 209 ASFLLQAQSSKAGVIGLANAGGDTINSVKQAAEFGIQQSGQKLVAFLLFINDIHGMGLKV 268 Query: 242 AQGLQLLEAFYWDMNDDTRAFAKRFAARPGMNGKMPSGNQAGVYAATLAYLNAVAATGSD 301 AQGLQL+EAFYWDMNDDTRAFAKRFA RPGMNGKMPSGNQAGVYA+TLAYLNAVAATGSD Sbjct: 269 AQGLQLMEAFYWDMNDDTRAFAKRFAQRPGMNGKMPSGNQAGVYASTLAYLNAVAATGSD 328 Query: 302 DAKAVVPQMKTFKGKDRLFGDTTIRQDGRVIHPMYLFEVKKPEESKYPYDYYKLIATIPA 361 DAK VVPQMK F GKD+LFGD TIRQDGRV+HPMYLFEVKKPEESKYPYDYY+L++TI A Sbjct: 329 DAKDVVPQMKKFSGKDKLFGDVTIRQDGRVVHPMYLFEVKKPEESKYPYDYYRLVSTIAA 388 Query: 362 DQAFRPLADGGCSLVK 377 D+AFRP+A+GGC LV+ Sbjct: 389 DKAFRPVAEGGCELVR 404 >ref|YP_001991077.1| branched chain amino acid transport system substrate binding protein [Rhodopseudomonas palustris TIE-1] gb|ACF00602.1| branched chain amino acid transport system substrate binding protein [Rhodopseudomonas palustris TIE-1] Length = 404 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/377 (89%), Positives = 357/377 (94%) Query: 1 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFGGGGKGIKVEIVYADHQNKADVGSAIA 60 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDF GGGK IKVEIVYADHQNKADVG+AIA Sbjct: 28 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFAGGGKNIKVEIVYADHQNKADVGNAIA 87 Query: 61 RKWLDVEGVDAIVDVPNSAVGLAINTILRDSRMTFLASSTASSDLTGKACSPNTIQWVND 120 R+WLD EGVDAIVDVPNSAVGL+INT+LR ++MTFLASSTASSDLTGKACSPNTIQWVND Sbjct: 88 RRWLDNEGVDAIVDVPNSAVGLSINTLLRGTKMTFLASSTASSDLTGKACSPNTIQWVND 147 Query: 121 AWATGNTTAAAMMQRGGKDWYFVTVDYALGKGIEAEATNYIEKHGGKVLGSSKHPLGTSD 180 WATGNTTAAAMMQRGGKDWYF+TVDYALGKGIEAEA YIE HGGKVLGS+KHPLGTSD Sbjct: 148 TWATGNTTAAAMMQRGGKDWYFITVDYALGKGIEAEAAKYIEAHGGKVLGSAKHPLGTSD 207 Query: 181 FASFLLQAQSSKAKVIGLANAGGDTINAVKQAAEFGIQQGGQTMVAFLLFVNDIHGMGLK 240 FASFLLQAQSSKA VIGLANAGGDTIN+VKQ AEFGIQQ GQ +VAFLLF+NDIHGMGLK Sbjct: 208 FASFLLQAQSSKAGVIGLANAGGDTINSVKQGAEFGIQQSGQKLVAFLLFINDIHGMGLK 267 Query: 241 VAQGLQLLEAFYWDMNDDTRAFAKRFAARPGMNGKMPSGNQAGVYAATLAYLNAVAATGS 300 VAQGLQL+EAFYWDMNDDTRAFAKRFA RPGMNGKMPSGNQAGVYA+TLAYLNAVAATGS Sbjct: 268 VAQGLQLMEAFYWDMNDDTRAFAKRFAQRPGMNGKMPSGNQAGVYASTLAYLNAVAATGS 327 Query: 301 DDAKAVVPQMKTFKGKDRLFGDTTIRQDGRVIHPMYLFEVKKPEESKYPYDYYKLIATIP 360 DDAK VVPQMK F GKD+LFGD TIRQDGRV+HPMYLFEVKKPEESKYPYDYY+L++TI Sbjct: 328 DDAKDVVPQMKKFSGKDKLFGDVTIRQDGRVVHPMYLFEVKKPEESKYPYDYYRLVSTIA 387 Query: 361 ADQAFRPLADGGCSLVK 377 AD+AFRP+A+GGC L K Sbjct: 388 ADKAFRPIAEGGCELAK 404 >ref|YP_487221.1| urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris HaA2] gb|ABD08310.1| urea/short-chain binding protein of ABC transporter [Rhodopseudomonas palustris HaA2] Length = 404 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/377 (88%), Positives = 357/377 (94%) Query: 1 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFGGGGKGIKVEIVYADHQNKADVGSAIA 60 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDF GGGK +KVEI+YADHQNKADVG+AIA Sbjct: 28 VVRVGVLNDISGIFQDTNGMGSVEAARMAAEDFAGGGKNVKVEIIYADHQNKADVGNAIA 87 Query: 61 RKWLDVEGVDAIVDVPNSAVGLAINTILRDSRMTFLASSTASSDLTGKACSPNTIQWVND 120 R+WLD EGVDAIVDVPNS+VGL+INT+LRD++MTFLASSTASSDLTGKACSPNTIQWVND Sbjct: 88 RRWLDNEGVDAIVDVPNSSVGLSINTLLRDTKMTFLASSTASSDLTGKACSPNTIQWVND 147 Query: 121 AWATGNTTAAAMMQRGGKDWYFVTVDYALGKGIEAEATNYIEKHGGKVLGSSKHPLGTSD 180 WATGNTTAAAM+ RGGKDWYF+TVDYALGKGIEAEAT YIE HGGKV+GSSKHPLGTSD Sbjct: 148 TWATGNTTAAAMIGRGGKDWYFITVDYALGKGIEAEATKYIEAHGGKVVGSSKHPLGTSD 207 Query: 181 FASFLLQAQSSKAKVIGLANAGGDTINAVKQAAEFGIQQGGQTMVAFLLFVNDIHGMGLK 240 FASFLLQAQ SKA VIGLANAGGDTIN VKQAAEFGIQQ GQ +VAFLLF+ND+HGMGLK Sbjct: 208 FASFLLQAQGSKAGVIGLANAGGDTINTVKQAAEFGIQQSGQKLVAFLLFINDVHGMGLK 267 Query: 241 VAQGLQLLEAFYWDMNDDTRAFAKRFAARPGMNGKMPSGNQAGVYAATLAYLNAVAATGS 300 VAQGLQL+EAFYWDMNDDTRAFAKRFAARPGMNGKMPSGNQAGVYA+TLAYLNAVAATGS Sbjct: 268 VAQGLQLMEAFYWDMNDDTRAFAKRFAARPGMNGKMPSGNQAGVYASTLAYLNAVAATGS 327 Query: 301 DDAKAVVPQMKTFKGKDRLFGDTTIRQDGRVIHPMYLFEVKKPEESKYPYDYYKLIATIP 360 DDAK VVPQMK F GKD+LFGD TIRQDGRV+HPMYLFEVKKP +SKYPYDYY L++TIP Sbjct: 328 DDAKQVVPQMKKFSGKDKLFGDVTIRQDGRVVHPMYLFEVKKPADSKYPYDYYTLVSTIP 387 Query: 361 ADQAFRPLADGGCSLVK 377 AD+AFRPL DG CSLVK Sbjct: 388 ADKAFRPLKDGECSLVK 404