BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0025.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773559.1| RNA polymerase sigma subunit [Bradyrhizobium ja... 478 e-133 ref|YP_004612131.1| ECF subfamily RNA polymerase sigma-24 subuni... 349 3e-94 ref|NP_103060.1| RNA polymerase sigma subunit [Mesorhizobium lot... 338 9e-91 ref|YP_548063.1| FecI-like sigma-24 factor [Polaromonas sp. JS66... 275 6e-72 ref|ZP_03269242.1| RNA polymerase, sigma-24 subunit, ECF subfami... 249 3e-64 >ref|NP_773559.1| RNA polymerase sigma subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC52184.1| bll6919 [Bradyrhizobium japonicum USDA 110] Length = 296 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 230/290 (79%), Positives = 251/290 (86%) Query: 9 AATDVDALLAAMRPRLHRYCARMVGSVIDGEDVLQDALIKAVEAFASAAPIQNPQAWLFR 68 A D+++LLA MRP+LHRYCARMVGSVIDGEDVLQDALIKA+EA + P NP+ WLFR Sbjct: 7 ATIDIESLLAGMRPKLHRYCARMVGSVIDGEDVLQDALIKAMEALQTVTPAVNPEGWLFR 66 Query: 69 IAHNTALDFLRRRNRQEALHAPEEVDMMAGELDDLGRREIAATGLRTFMRLPVAQRSSVI 128 IAHNTALDFLRRRNRQEALH+ EEV+M+A +LDDL R+IAAT LRTFMRLPVAQRSSVI Sbjct: 67 IAHNTALDFLRRRNRQEALHSAEEVEMIADQLDDLESRQIAATSLRTFMRLPVAQRSSVI 126 Query: 129 LMDVLGCSLQEICGIMDFSLPAVKAALHRGRTQLREFASEPDDAPRPGLSPADRIRLNAY 188 LMDVLGCSL E+C IMDFSLPAVKAALHRGRTQL EFA +PDDAPR LS ADR RLNAY Sbjct: 127 LMDVLGCSLAEVCDIMDFSLPAVKAALHRGRTQLHEFAEQPDDAPRAELSEADRTRLNAY 186 Query: 189 VSRFNARDFDAIRAMIADDIRLELVNRTRLNGKAEVSRYFGNYSKIDDWHLVTGQVEGRP 248 V FNARDFDAIR MIADD+RLELVNRTRL GKAEVSRYFGNYSK+ DWHLVTGQV+GRP Sbjct: 187 VGHFNARDFDAIREMIADDVRLELVNRTRLKGKAEVSRYFGNYSKVSDWHLVTGQVDGRP 246 Query: 249 AILVFDPNAQGAPPRSFMLLDWSADKVATIRDFRHASYAIDGAEWAVDRG 298 AILVFDPN P+ FMLL+WSADK+A IRDFRHA+Y ID AE VDRG Sbjct: 247 AILVFDPNEPNGRPKYFMLLNWSADKLAIIRDFRHAAYVIDAAECVVDRG 296 >ref|YP_004612131.1| ECF subfamily RNA polymerase sigma-24 subunit [Mesorhizobium opportunistum WSM2075] gb|AEH88037.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mesorhizobium opportunistum WSM2075] Length = 295 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 181/295 (61%), Positives = 214/295 (72%), Gaps = 1/295 (0%) Query: 1 MTSPHQAPAATDVDALLAAMRPRLHRYCARMVGSVIDGEDVLQDALIKAVEAFASAAPIQ 60 MT P + + L +RP+LHRYCARM GSVIDGEDVLQ+AL KA +A A A PI Sbjct: 1 MTIPVADRHSALFERLSGELRPKLHRYCARMTGSVIDGEDVLQEALAKAFQALADAGPIA 60 Query: 61 NPQAWLFRIAHNTALDFLRRRNRQEALHAPEEVDMMAGELDDLGRREIAATGLRTFMRLP 120 NP+ WLFRIAHNTALDFLRRR R E +H+ E+ DM+ + R+ A+ L TFMRLP Sbjct: 61 NPEGWLFRIAHNTALDFLRRRAR-EKVHSDEDPDMIVDPANPTVDRQAASAALHTFMRLP 119 Query: 121 VAQRSSVILMDVLGCSLQEICGIMDFSLPAVKAALHRGRTQLREFASEPDDAPRPGLSPA 180 VAQRSSVI+MDVLG SLQEI +D S+PA+KAALHRGR +LRE A E DD P P LS A Sbjct: 120 VAQRSSVIMMDVLGYSLQEISATLDASVPAIKAALHRGRGRLRELADEQDDRPVPRLSAA 179 Query: 181 DRIRLNAYVSRFNARDFDAIRAMIADDIRLELVNRTRLNGKAEVSRYFGNYSKIDDWHLV 240 +R+ L+AY+ RFNARDFDA+R M+AD++RLELV +TRLNG+ EV YF NYS++ DW V Sbjct: 180 ERLLLDAYIDRFNARDFDAVRDMLADEVRLELVAKTRLNGRKEVGTYFSNYSRVQDWCFV 239 Query: 241 TGQVEGRPAILVFDPNAQGAPPRSFMLLDWSADKVATIRDFRHASYAIDGAEWAV 295 G VE RPAILV D N GA P F+LL W K+A IRDFRHA YA DGAE V Sbjct: 240 PGFVEDRPAILVRDANDPGARPTYFILLAWQDGKLAAIRDFRHARYAADGAELLV 294 >ref|NP_103060.1| RNA polymerase sigma subunit [Mesorhizobium loti MAFF303099] dbj|BAB48846.1| probable RNA polymerase sigma subunit [Mesorhizobium loti MAFF303099] Length = 307 Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 168/277 (60%), Positives = 205/277 (74%), Gaps = 1/277 (0%) Query: 16 LLAAMRPRLHRYCARMVGSVIDGEDVLQDALIKAVEAFASAAPIQNPQAWLFRIAHNTAL 75 L A +RP+LHRYCARM GSV DGEDVLQ+ L KA+EA A PI NP+ WLFRIAHN AL Sbjct: 28 LFAELRPKLHRYCARMTGSVFDGEDVLQETLAKAIEALPGAGPIANPEGWLFRIAHNAAL 87 Query: 76 DFLRRRNRQEALHAPEEVDMMAGELDDLGRREIAATGLRTFMRLPVAQRSSVILMDVLGC 135 DFLRRR R++A ++ E++DM+ + R+ A+ GL TFMRLPV QRSSVI+MDVLG Sbjct: 88 DFLRRRAREQA-YSDEDLDMIVDPANPTIDRQAASAGLHTFMRLPVTQRSSVIMMDVLGY 146 Query: 136 SLQEICGIMDFSLPAVKAALHRGRTQLREFASEPDDAPRPGLSPADRIRLNAYVSRFNAR 195 SLQEI ++D S+PAVKAALHRGR +LR+ A+EP D P P L A+R LNAY+ RFNAR Sbjct: 147 SLQEISAMLDTSIPAVKAALHRGRDRLRQIANEPHDRPLPRLGAAERQLLNAYIDRFNAR 206 Query: 196 DFDAIRAMIADDIRLELVNRTRLNGKAEVSRYFGNYSKIDDWHLVTGQVEGRPAILVFDP 255 DFDA+R M+A+++RLELV +TRLNG+ EV YFGNYS+ DWHLV G VE RPAILV D Sbjct: 207 DFDAVRDMLAEEVRLELVAKTRLNGREEVGTYFGNYSRAQDWHLVPGFVENRPAILVHDL 266 Query: 256 NAQGAPPRSFMLLDWSADKVATIRDFRHASYAIDGAE 292 N P F++L W ++A I DFRHA Y D A+ Sbjct: 267 NDPATRPAYFIVLAWHDGRLAAIGDFRHARYVADSAD 303 >ref|YP_548063.1| FecI-like sigma-24 factor [Polaromonas sp. JS666] gb|ABE43165.1| RNA polymerase, sigma subunit, ECF family [Polaromonas sp. JS666] Length = 311 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 148/280 (52%), Positives = 193/280 (68%), Gaps = 4/280 (1%) Query: 12 DVDALLAAMRPRLHRYCARMVGSVIDGEDVLQDALIKAVEAFASAAPIQNPQAWLFRIAH 71 D L+ +R RLHRYCARM GS++DGEDV+Q+ LIKA E++ A +QN + WLFRIAH Sbjct: 15 DFPQLMGQLRARLHRYCARMTGSMLDGEDVVQETLIKANESY-DARTVQNVEGWLFRIAH 73 Query: 72 NTALDFLRRRNRQEALHAPEEVDMMAGELDDLGRREIAATGLRTFMRLPVAQRSSVILMD 131 NTA+DFLRRR R++ + A E+V+ MA L D RR +A LRTFMRLP+AQRS+VIL D Sbjct: 74 NTAMDFLRRRKREQGVFAEEDVEAMADTLTDADRRHVATAALRTFMRLPLAQRSTVILAD 133 Query: 132 VLGCSLQEICGIMDFSLPAVKAALHRGRTQLREFASEP-DDAPRPGLSPADRIRLNAYVS 190 VLG +L E +M ++PAVKAALHRGR +LRE + +P D AP P LS +D+ L AY Sbjct: 134 VLGYALDEAAEVMGTTVPAVKAALHRGRARLRELSHQPADAAPAPILSASDQALLTAYAE 193 Query: 191 RFNARDFDAIRAMIADDIRLELVNRTRLNGKAEVSRYFGNYSKIDDWHLVTGQVEGRPAI 250 RFNARDFD +R M+A D+RL+LV R R +A YF NY+K + +EGRPA+ Sbjct: 194 RFNARDFDGLREMLAQDVRLDLVAR-RKPMQARGGEYFTNYAKTQGLRMTPMSLEGRPAL 252 Query: 251 LVFDPNAQGAPPRSF-MLLDWSADKVATIRDFRHASYAID 289 V +GA ++ ++LDW KVA IRDFR+A YA++ Sbjct: 253 WVNTEADEGAGAAAYVVVLDWRDGKVAAIRDFRYARYAME 292 >ref|ZP_03269242.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. H160] gb|EDZ99173.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. H160] Length = 288 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/279 (49%), Positives = 178/279 (63%), Gaps = 9/279 (3%) Query: 16 LLAAMRPRLHRYCARMVGSVIDGEDVLQDALIKAVEAFASAAPIQNPQAWLFRIAHNTAL 75 L+AAMRPRLHRYC RM+GS DGEDV+Q+ L AV AF++A I P++WL IAH+ AL Sbjct: 9 LMAAMRPRLHRYCTRMMGSAFDGEDVVQETLSNAVAAFSTAGEILRPESWLLGIAHHAAL 68 Query: 76 DFLRRRNRQEALHAPEEVDMMAGELDDLGRR---EIAATG-LRTFMRLPVAQRSSVILMD 131 D LRRR RQ +E D L D G + +AAT L F+ L V QRS V+L D Sbjct: 69 DALRRRKRQ----GRQESDEALANLTDHGAQADARVAATASLAMFLHLSVVQRSCVVLAD 124 Query: 132 VLGCSLQEICGIMDFSLPAVKAALHRGRTQLREFASEPDDAPRPGLSPADRIRLNAYVSR 191 VLG SL E I+ S+P+VKAALHRGR +LRE + DA P L+ AD RL AY R Sbjct: 125 VLGYSLTETAAILSVSVPSVKAALHRGRGRLRELV-DVSDAALPRLADADLERLRAYAER 183 Query: 192 FNARDFDAIRAMIADDIRLELVNRTRLNGKAEVSRYFGNYSKIDDWHLVTGQVEGRPAIL 251 FNARDFDA+R ++A+++RL+LV+R RL G+ +VS YF Y++ + G E RP +L Sbjct: 184 FNARDFDALRDLLAEEVRLDLVSRARLAGRKDVSVYFTRYAQQPGCSVSLGWAEHRPVLL 243 Query: 252 VFDPNAQGAPPRSFMLLDWSADKVATIRDFRHASYAIDG 290 V DP A +LLDW+ D++ IRDFR A Y ++ Sbjct: 244 VTDPAVAEARVAYVILLDWTGDRIIAIRDFRFAPYVMES 282