BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0022.p (390 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236903.1| hypothetical protein BBta_0732 [Bradyrhizobi... 720 0.0 ref|YP_001208616.1| branched chain amino-acid ABC transporter su... 717 0.0 ref|NP_767692.1| ABC transporter binding protein [Bradyrhizobium... 704 0.0 ref|ZP_01012078.1| putative ABC transporter binding protein [Mar... 416 e-114 ref|ZP_02188757.1| probable substrate-binding protein [alpha pro... 367 3e-99 >ref|YP_001236903.1| hypothetical protein BBta_0732 [Bradyrhizobium sp. BTAi1] gb|ABQ32997.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 390 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/390 (87%), Positives = 371/390 (95%) Query: 1 MKKAFWLAGAMAVALAQPAIAADSVKIGFVSTFSGPTAVIGNDMRNSFELALDHLGRKID 60 MK +FWLAGA A+ + A A D++KIGFVSTFSGPTAVIGNDMRNSFELALDHLGRK++ Sbjct: 1 MKTSFWLAGAAALLFSSTAFAGDTIKIGFVSTFSGPTAVIGNDMRNSFELALDHLGRKMN 60 Query: 61 GKPVEVIYEDDQQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDSKTFLISA 120 GKPVEVIYEDDQQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDS+TFLISA Sbjct: 61 GKPVEVIYEDDQQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDSQTFLISA 120 Query: 121 NAGPSQLAGELCSPYVFSTSWQNDQTPQAVGTYMNQKGVKSVFLIGPNYAAGKDMLAGVK 180 NAGPSQLAGELCSPYVFSTSWQNDQTP A+G YMNQKGVKSVFLIGPNYAAGKDMLAG+K Sbjct: 121 NAGPSQLAGELCSPYVFSTSWQNDQTPAAMGLYMNQKGVKSVFLIGPNYAAGKDMLAGLK 180 Query: 181 STFKGEVVGEEYTVWPSQLDFSAELTKAKNSKAESIFVFYPGAAGVQFLNQYAQAGIKQQ 240 STFKG++VGEEYTVWPSQLDFSAEL+KA+ S AESIFVFYPGAAGVQFLNQY QAG+K++ Sbjct: 181 STFKGQIVGEEYTVWPSQLDFSAELSKARASGAESIFVFYPGAAGVQFLNQYVQAGLKEK 240 Query: 241 IPLYTAFTIDELSLPLQKDNALGVPGAQQWVNDLPNEENKKFVADYRKKYPGLRPTFYGA 300 +PLYTAFT+DELSLPLQKDNA+GVPGAQ+WVNDLPNE+NK FVADYRKKY GLRPT+YGA Sbjct: 241 MPLYTAFTVDELSLPLQKDNAIGVPGAQEWVNDLPNEQNKTFVADYRKKYTGLRPTYYGA 300 Query: 301 QSYDAANLINSAVVAVKGDLTKKDAMKAEMEKVNFKSVRGPFKYGNNHIPIQNFYLQDVV 360 Q+YDAA LINSAVVAVKGD +KKDAMKAEMEK NFKS+RG FK+GNNHIPIQ+FYLQDVV Sbjct: 301 QAYDAAQLINSAVVAVKGDTSKKDAMKAEMEKANFKSLRGAFKFGNNHIPIQSFYLQDVV 360 Query: 361 KDAEGQLSLKTVATIVKDDQDRFHDKCPMK 390 KDA+GQLSLKTVATIV++DQDRFHDKCPMK Sbjct: 361 KDADGQLSLKTVATIVENDQDRFHDKCPMK 390 >ref|YP_001208616.1| branched chain amino-acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL80401.1| conserved hypothetical protein; putative branched-chain amino acid ABC transporter, substrate-binding protein [Bradyrhizobium sp. ORS 278] Length = 390 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/390 (87%), Positives = 369/390 (94%) Query: 1 MKKAFWLAGAMAVALAQPAIAADSVKIGFVSTFSGPTAVIGNDMRNSFELALDHLGRKID 60 MK +FWLAGA A+ + A A D++KIGFVSTFSGPTAVIGNDMRNSFELALDHLGRK+D Sbjct: 1 MKTSFWLAGAAALLFSSTAFAGDTIKIGFVSTFSGPTAVIGNDMRNSFELALDHLGRKMD 60 Query: 61 GKPVEVIYEDDQQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDSKTFLISA 120 GKPVEVIYEDDQQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDS+TFLISA Sbjct: 61 GKPVEVIYEDDQQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDSQTFLISA 120 Query: 121 NAGPSQLAGELCSPYVFSTSWQNDQTPQAVGTYMNQKGVKSVFLIGPNYAAGKDMLAGVK 180 NAGPSQLAGELCSPYVFSTSWQNDQTP A+G YMNQKGVKSVFLIGPNYAAGKDMLAGVK Sbjct: 121 NAGPSQLAGELCSPYVFSTSWQNDQTPAAMGLYMNQKGVKSVFLIGPNYAAGKDMLAGVK 180 Query: 181 STFKGEVVGEEYTVWPSQLDFSAELTKAKNSKAESIFVFYPGAAGVQFLNQYAQAGIKQQ 240 STFKG+VVGEEYTVWPSQLDFSAEL+KA+ S AESIFVFYPGAAGVQFLNQYAQAG+K++ Sbjct: 181 STFKGQVVGEEYTVWPSQLDFSAELSKARASGAESIFVFYPGAAGVQFLNQYAQAGLKEK 240 Query: 241 IPLYTAFTIDELSLPLQKDNALGVPGAQQWVNDLPNEENKKFVADYRKKYPGLRPTFYGA 300 +PLYTAFT+DELSLPLQKDNA+GVPGAQ+WVNDLPNE+NK FVADYRKKY GLRPT+YGA Sbjct: 241 MPLYTAFTVDELSLPLQKDNAIGVPGAQEWVNDLPNEQNKTFVADYRKKYTGLRPTYYGA 300 Query: 301 QSYDAANLINSAVVAVKGDLTKKDAMKAEMEKVNFKSVRGPFKYGNNHIPIQNFYLQDVV 360 Q+YDAA LINSAVVAVKGD +KK MKAEMEK NFKS+RG FK+GNNHIPIQ+FYLQDVV Sbjct: 301 QAYDAAQLINSAVVAVKGDTSKKAEMKAEMEKANFKSLRGAFKFGNNHIPIQSFYLQDVV 360 Query: 361 KDAEGQLSLKTVATIVKDDQDRFHDKCPMK 390 KDA+GQLSLKTVATIV++DQDRFHDKC MK Sbjct: 361 KDADGQLSLKTVATIVENDQDRFHDKCQMK 390 >ref|NP_767692.1| ABC transporter binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46317.1| blr1052 [Bradyrhizobium japonicum USDA 110] Length = 392 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/390 (87%), Positives = 369/390 (94%) Query: 1 MKKAFWLAGAMAVALAQPAIAADSVKIGFVSTFSGPTAVIGNDMRNSFELALDHLGRKID 60 M+ AFWLAGA A+ LA PA A D++KIGFVSTFSGPTAVIGNDMRNSFELALDHLGRK+D Sbjct: 3 MRTAFWLAGAAALVLANPAFAGDTIKIGFVSTFSGPTAVIGNDMRNSFELALDHLGRKMD 62 Query: 61 GKPVEVIYEDDQQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDSKTFLISA 120 GKPVEVIYEDD QKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDS+TFLISA Sbjct: 63 GKPVEVIYEDDGQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDSQTFLISA 122 Query: 121 NAGPSQLAGELCSPYVFSTSWQNDQTPQAVGTYMNQKGVKSVFLIGPNYAAGKDMLAGVK 180 NAGPSQLAGELCSPYVFSTSWQNDQTPQA+G YMNQKGVKSVFLIGPNYAAGKDMLAG+K Sbjct: 123 NAGPSQLAGELCSPYVFSTSWQNDQTPQAMGLYMNQKGVKSVFLIGPNYAAGKDMLAGLK 182 Query: 181 STFKGEVVGEEYTVWPSQLDFSAELTKAKNSKAESIFVFYPGAAGVQFLNQYAQAGIKQQ 240 +TFKGE+ GEEYTVWPSQLDFSAEL+KA+ S AESIFVFYPGAAGVQFLNQY QAG+K Sbjct: 183 NTFKGEIKGEEYTVWPSQLDFSAELSKARASGAESIFVFYPGAAGVQFLNQYTQAGLKST 242 Query: 241 IPLYTAFTIDELSLPLQKDNALGVPGAQQWVNDLPNEENKKFVADYRKKYPGLRPTFYGA 300 +PLYTAFT+DELSLPLQK+NALGVPGAQQWVNDLPNE+NK+FVADYRKKYP LRPT+YGA Sbjct: 243 MPLYTAFTVDELSLPLQKENALGVPGAQQWVNDLPNEQNKRFVADYRKKYPNLRPTYYGA 302 Query: 301 QSYDAANLINSAVVAVKGDLTKKDAMKAEMEKVNFKSVRGPFKYGNNHIPIQNFYLQDVV 360 Q+YDAA LINSAVVAVKGD +KKDAMKAEMEK NFKS+RG FKYGNNHIP+Q+FYLQDVV Sbjct: 303 QTYDAAQLINSAVVAVKGDTSKKDAMKAEMEKANFKSLRGAFKYGNNHIPVQSFYLQDVV 362 Query: 361 KDAEGQLSLKTVATIVKDDQDRFHDKCPMK 390 KDA+GQL+LKTVATIV++DQDRFH KC MK Sbjct: 363 KDADGQLALKTVATIVENDQDRFHQKCAMK 392 >ref|ZP_01012078.1| putative ABC transporter binding protein [Maritimibacter alkaliphilus HTCC2654] gb|EAQ14397.1| putative ABC transporter binding protein [Rhodobacterales bacterium HTCC2654] Length = 380 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/375 (54%), Positives = 274/375 (73%), Gaps = 8/375 (2%) Query: 22 ADSVKIGFVSTFSGPTAVIGNDMRNSFELALDHLGRKIDGKPVEVIYEDDQQKPDVGKQK 81 A+SVKIGFV+T + P AVIGN M N+ LA++HLG K +EVI+ DD P+ GKQ Sbjct: 8 AESVKIGFVTTLTTPAAVIGNQMENAVNLAVEHLGGKAGDLDIEVIFGDDGFAPETGKQA 67 Query: 82 TEKLVQSDKVDFIVGYIWSNVLLASLKTAVDSKTFLISANAGPSQLAGELCSPYVFSTSW 141 T+KLV+ D VDF+ GYIWS+VLLAS K+ +D+ FLISANAGPSQ+AG+LC P FSTSW Sbjct: 68 TDKLVKQDDVDFVAGYIWSHVLLASRKSVLDAGKFLISANAGPSQMAGKLCDPNFFSTSW 127 Query: 142 QNDQTPQAVGTYMNQKGVKSVFLIGPNYAAGKDMLAGVKSTFKGEVVGEEYTVW--PSQL 199 QNDQTP+A+G +N GVKS++++ PNYAAGKDM+AGV+ TF+GE+VG + T W +QL Sbjct: 128 QNDQTPEAMGDVLNDAGVKSLYIMAPNYAAGKDMVAGVERTFEGEIVGRDLTKWGADAQL 187 Query: 200 DFSAELTKAKNSKAESIFVFYPGAAGVQFLNQYAQAGIKQQIPLYTAFTIDELSLPLQKD 259 DFSAEL KA+ S A+ IFVFYPGAA F+ QY QAG+ +++PLY+ FT+D +SLP ++ Sbjct: 188 DFSAELAKARASGADGIFVFYPGAAAGAFIKQYDQAGLAEELPLYSVFTVDAISLPRLQE 247 Query: 260 NA----LGVPGAQQWVNDLPNEENKKFVADYRKKYPGLRPTFYGAQSYDAANLINSAVVA 315 LG Q+W L NE N +FVADY+ ++ G P++Y AQ+YD+ LI SAV Sbjct: 248 AGFTAVLGSQTTQEWDPTLDNEANARFVADYKAQFGGY-PSYYAAQAYDSIMLIASAVAK 306 Query: 316 VKGDLTKKDAMKAEMEKVNFKSVRGPFKYGNNHIPIQNFYLQDVVKDAEGQLSLKTVATI 375 V G+ DA++A +++ +F SVRG F YGNN+IPIQNFYL++VV+DA+G + K V T+ Sbjct: 307 V-GNTEDTDALRAALKESDFDSVRGEFTYGNNNIPIQNFYLREVVEDADGVWTTKVVKTV 365 Query: 376 VKDDQDRFHDKCPMK 390 ++ QD F +CPM+ Sbjct: 366 YENAQDNFAAECPME 380 >ref|ZP_02188757.1| probable substrate-binding protein [alpha proteobacterium BAL199] gb|EDP64585.1| probable substrate-binding protein [alpha proteobacterium BAL199] Length = 389 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 186/381 (48%), Positives = 244/381 (64%), Gaps = 2/381 (0%) Query: 10 AMAVALAQPAIAADSVKIGFVSTFSGPTAVIGNDMRNSFELALDHLGRKIDGKPVEVIYE 69 A V + A AAD +KIG + T SGP AV+G + + F+L +D G K+ G+ VE+I Sbjct: 11 AAGVGMGVSAHAADPLKIGMMVTLSGPPAVLGKHINDGFQLFVDQQGGKLGGRDVEIIVA 70 Query: 70 DDQQKPDVGKQKTEKLVQSDKVDFIVGYIWSNVLLASLKTAVDSKTFLISANAGPSQLAG 129 DD+ KPDV K + L++ DKVDF+ G ++SN+L A + +S+TFLI ANAG S AG Sbjct: 71 DDELKPDVALTKVKGLLERDKVDFVAGIVFSNILQAVFRPVTESETFLIGANAGTSTFAG 130 Query: 130 ELCSPYVFSTSWQNDQTPQAVGTYMNQKGVKSVFLIGPNYAAGKDMLAGVKSTFKGEVVG 189 + CSPY FSTSWQNDQ + +G Y KG KS FL+ PNY AGKD +AG K FKG +V Sbjct: 131 KGCSPYFFSTSWQNDQIHEVMGKYAQDKGFKSAFLLTPNYQAGKDSVAGFKRHFKGTIVD 190 Query: 190 EEYTVWPSQLDFSAELTKAKNSKAESIFVFYPGAAGVQFLNQYAQAGIKQQIPLYTAFTI 249 E YT LDFSAEL K +K + +F F PG GV + Q+ QAG+ + + +AFT+ Sbjct: 191 EVYTKL-GNLDFSAELAKIAAAKPDVVFTFMPGGMGVNLVKQFRQAGLDKNVKFLSAFTV 249 Query: 250 DELSLPLQKDNALGVPGAQQWVNDLPNEENKKFVADYRKKYPGLRPTFYGAQSYDAANLI 309 DE +LP KD+A+G+ + QW DL N NK FV+ Y KY G P+ Y +Q YDAA LI Sbjct: 250 DETTLPATKDDAVGLFSSSQWTPDLDNAANKAFVSAYEAKY-GYVPSLYSSQGYDAAQLI 308 Query: 310 NSAVVAVKGDLTKKDAMKAEMEKVNFKSVRGPFKYGNNHIPIQNFYLQDVVKDAEGQLSL 369 NSAV AVKGDL+ K A+ A ++K +F SVRG FKY NNH PIQ+FYL VK A+G+ + Sbjct: 309 NSAVKAVKGDLSDKKAVTAALKKADFASVRGDFKYNNNHFPIQDFYLVQAVKRADGKYAT 368 Query: 370 KTVATIVKDDQDRFHDKCPMK 390 V + D D + +C MK Sbjct: 369 SVVEKVFDDYGDVYASECAMK 389