BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0017.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001236907.1| branched chain amino acid ABC transporter AT...   228   3e-58
ref|YP_001208612.1| branched chain amino acid ABC transporter AT...   227   5e-58
ref|NP_767707.1| ABC transporter ATP-binding protein [Bradyrhizo...   220   6e-56
ref|YP_004234564.1| ABC transporter-like protein [Acidovorax ave...   177   7e-43
ref|YP_003507898.1| ABC transporter-like protein [Meiothermus ru...   171   4e-41

>ref|YP_001236907.1| branched chain amino acid ABC transporter ATP-binding protein
           [Bradyrhizobium sp. BTAi1]
 gb|ABQ33001.1| amino acid/amide ABC transporter ATP-binding protein 2, HAAT family
           [Bradyrhizobium sp. BTAi1]
          Length = 234

 Score =  228 bits (580), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 120/137 (87%)

Query: 1   VDGIETCYGLSQVLFGLSLKIKSGEMVALMGRNGMGKTTTIRSIMGLTPARSGAIRFAGE 60
           VDGIETCYGLSQVLFGLSL I+ GEMV+LMGRNGMGKTTTIRSIMGLT AR+G IRF+G+
Sbjct: 5   VDGIETCYGLSQVLFGLSLAIRPGEMVSLMGRNGMGKTTTIRSIMGLTQARAGVIRFSGQ 64

Query: 61  AVRGLPSYKIAKLGIGLVPEGRQIFPNLTVRENLVAASGNRLGASDPWTIDKIHALFPRL 120
             R LPSY+IA+LGIGLVPEGRQIFPNLTV ENLVAAS NRLGA+DPWT+DKIHALFPRL
Sbjct: 65  ETRKLPSYRIAQLGIGLVPEGRQIFPNLTVTENLVAASTNRLGAADPWTLDKIHALFPRL 124

Query: 121 AERTGNMGVTLSAASSR 137
           AER  NMG  LS    +
Sbjct: 125 AERGSNMGNQLSGGEQQ 141


>ref|YP_001208612.1| branched chain amino acid ABC transporter ATP-binding protein
           [Bradyrhizobium sp. ORS 278]
 emb|CAL80397.1| Putative branched-chain amino acid ABC transporter, ATP-binding
           protein [Bradyrhizobium sp. ORS 278]
          Length = 234

 Score =  227 bits (578), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 120/137 (87%)

Query: 1   VDGIETCYGLSQVLFGLSLKIKSGEMVALMGRNGMGKTTTIRSIMGLTPARSGAIRFAGE 60
           VDGIETCYGLSQVLFGLSL I+ GEMV+LMGRNGMGKTTTIRSIMGLT AR+G IRF+G+
Sbjct: 5   VDGIETCYGLSQVLFGLSLAIRPGEMVSLMGRNGMGKTTTIRSIMGLTQARAGEIRFSGQ 64

Query: 61  AVRGLPSYKIAKLGIGLVPEGRQIFPNLTVRENLVAASGNRLGASDPWTIDKIHALFPRL 120
             R LPSY+IA+LGIGLVPEGRQIFPNLTV ENLVAAS NRLGA+DPWT+DKIH LFPRL
Sbjct: 65  ETRRLPSYRIAQLGIGLVPEGRQIFPNLTVTENLVAASTNRLGAADPWTLDKIHGLFPRL 124

Query: 121 AERTGNMGVTLSAASSR 137
           AER GNMG  LS    +
Sbjct: 125 AERGGNMGNQLSGGEQQ 141


>ref|NP_767707.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC46332.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA
           110]
          Length = 237

 Score =  220 bits (560), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 118/137 (86%)

Query: 1   VDGIETCYGLSQVLFGLSLKIKSGEMVALMGRNGMGKTTTIRSIMGLTPARSGAIRFAGE 60
           VDGIETCYGLSQVLFGLSL IK GEMV+LMGRNGMGKTTTIRSIMGLTPAR+G+IRFAG 
Sbjct: 8   VDGIETCYGLSQVLFGLSLSIKPGEMVSLMGRNGMGKTTTIRSIMGLTPARAGSIRFAGS 67

Query: 61  AVRGLPSYKIAKLGIGLVPEGRQIFPNLTVRENLVAASGNRLGASDPWTIDKIHALFPRL 120
            VR  PSY+IAKLG+GLVPEGRQIFPNLTVRENLVAA+ +R G+S+PWT+  I+ +FPRL
Sbjct: 68  EVRTQPSYRIAKLGVGLVPEGRQIFPNLTVRENLVAAAADRFGSSNPWTLAAIYVMFPRL 127

Query: 121 AERTGNMGVTLSAASSR 137
           AER  NMG  LS    +
Sbjct: 128 AERASNMGNQLSGGEQQ 144


>ref|YP_004234564.1| ABC transporter-like protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gb|ADX45997.1| ABC transporter related protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 236

 Score =  177 bits (448), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 108/132 (81%)

Query: 1   VDGIETCYGLSQVLFGLSLKIKSGEMVALMGRNGMGKTTTIRSIMGLTPARSGAIRFAGE 60
           V+G+E  YG SQVLFG++  I++GE+  L+GRNGMGKTTT+R+++GLT A++G++RF GE
Sbjct: 7   VEGLEAAYGSSQVLFGIAFDIRAGEVATLLGRNGMGKTTTVRALLGLTRAKAGSVRFRGE 66

Query: 61  AVRGLPSYKIAKLGIGLVPEGRQIFPNLTVRENLVAASGNRLGASDPWTIDKIHALFPRL 120
            +  L   +IA++G+ +VPEGRQIFPNL+VRENLVA +  R GA+DPWT+D++HALFPRL
Sbjct: 67  RIERLAPDRIARMGLAVVPEGRQIFPNLSVRENLVAFAARRNGAADPWTLDRVHALFPRL 126

Query: 121 AERTGNMGVTLS 132
           AER  +MG  LS
Sbjct: 127 AERASHMGGQLS 138


>ref|YP_003507898.1| ABC transporter-like protein [Meiothermus ruber DSM 1279]
 gb|ADD28878.1| ABC transporter related protein [Meiothermus ruber DSM 1279]
          Length = 236

 Score =  171 bits (432), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 101/138 (73%)

Query: 1   VDGIETCYGLSQVLFGLSLKIKSGEMVALMGRNGMGKTTTIRSIMGLTPARSGAIRFAGE 60
           ++ +ET YG SQVLFG+SL+++ G++  L+GRNGMGKTTT+RSIMGLTPAR G IR AG 
Sbjct: 7   IEQLETFYGPSQVLFGISLQVEEGQVATLLGRNGMGKTTTVRSIMGLTPARRGRIRLAGR 66

Query: 61  AVRGLPSYKIAKLGIGLVPEGRQIFPNLTVRENLVAASGNRLGASDPWTIDKIHALFPRL 120
            +  L   +IA LG+ LVPEGRQIFPNLTV ENL+A + NR  + +PWT+ +I  LFPRL
Sbjct: 67  PIEALAPEQIAALGVALVPEGRQIFPNLTVEENLIAFAANRNQSPEPWTLARIWTLFPRL 126

Query: 121 AERTGNMGVTLSAASSRC 138
            ER  N+G  LS    + 
Sbjct: 127 KERRNNLGYQLSGGEQQM 144